Bioinformatic assessment of mass spectrometric chemical derivatisation techniques for proteome database searching

Proteomics

Volumn 1, Issue 11, 2001, Pages 1368-1377

  Sidhu, Khushwant S ^a   Sangvanich, Polkit ^a   Brancia, Francesco L ^a   Sullivan, Anthony G ^a   Gaskell, Simon J ^a   Wolkenhauer, Olaf ^a   Oliver, Stephen G ^a   Hubbard, Simon J ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

Bioinformatics; Chemical derivatisation; Database searching; Mixture analysis

Indexed keywords

PEPTIDE; PROTEIN;

ANIMAL; ARTICLE; BIOLOGY; CAENORHABDITIS ELEGANS; CHEMISTRY; DATA BASE; ESCHERICHIA COLI; HAEMOPHILUS INFLUENZAE; MASS SPECTROMETRY; METABOLISM; METHODOLOGY; PROTEIN TERTIARY STRUCTURE; SACCHAROMYCES CEREVISIAE; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ANIMALS; CAENORHABDITIS ELEGANS; COMPUTATIONAL BIOLOGY; DATABASES; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ESCHERICHIA COLI; HAEMOPHILUS INFLUENZAE; MASS SPECTROMETRY; PEPTIDES; PROTEIN STRUCTURE, TERTIARY; PROTEINS; SACCHAROMYCES CEREVISIAE;

EID: 0035525578     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/1615-9861(200111)1:11<1368::AID-PROT1368>3.0.CO;2-U     Document Type: Article

References (35)

1. Jensen, O. N., Podtelejnikov, A., Mann, M., Rapid Commun. Mass Spectrom. 1996, 10, 1371-1378.
2. Blackstock, W. P., Weir, M. P., Trends Biotechnol. 1999, 17, 121-127.
3. Yates, J. R. Electrophoresis 1998, 19, 893-900.
4. Yates, J. R. Trends Genet. 2000, 16, 5-8.
5. Shevchenko, A., Jensen, O. N., Podtelejnikov, A. V., Sagliocco, F., et al., Proc. Nat. Acad. Sci. USA 1996, 93, 14440-14445.
6. Fenyo, D., Qin, J., Chait B. T., Electrophoresis 1998, 19, 998-1005.
7. Goodlett, D. R., Bruce, J. E., Anderson, G. A., Rist, B., et al., Anal. Chem. 2000, 72, 1112-1118.
8. Summerfield, S. G., Ferro, M., Hubbard, S. J., Beynon, R. J., Gaskell, S. J., J. Am. Soc. Mass Spec. 2001, in press.
9. Summerfield, S. G., Steen, H., O'Malley, M., Gaskell, S. J., Int. J. Mass Spectrom. 1999, 188, 95-103.
10. Summerfield, S. G., Bolgar, M. S., Gaskell, S. J., J. Mass Spectrom. 1997, 32, 225-231.
11. Brancia, F., Butt, A., Beynon, R. J., Hubbard, S. J., et al., Electrophoresis, 2001, 22, 552-559.
12. Pappin, D. J. C., Rahman, D., Hansen, H. F., Bartlet-Jones, M., et al., Mass Spectrom. Biol. Sci. 1996, 1, 135-150.
13. Mann, M., Wilm, M. Anal. Chem., 1994, 68, 1-8.
14. Yates III, J. R., Eng, J. K., McCormack, A. L., Schieltz, D. Anal. Chem. 1995, 67, 1426-1436.
15. Bauer, M. D., Sun, Y., Keough, T., Lacey, M. P., Rapid. Commun. Mass Spectrom. 2000, 14, 924.
16. Takach, E. J., Hines, W. M., Patterson, D. H., Juhaz, P., et al., Protein Chem. 1997, 76, 363-369
17. Cao P., Moini M, Rapid Commun. Mass Spectrom. 1998, 12, 864-870.
18. Green, M. K., Johnston, M. V., Larsen, B. S. Anal. Biochem. 1999, 275, 39-46.
19. Lehmann, W. D., Bohne, A., von der Lieth, C-W., J. Mass. Spectrom. 2000, 35, 1335-1341.
20. Barker, W. C., Garavelli, J. S., Hou, Z., Huang, H., et al. Nucleic Acids Res. 2001, 29, 29-32.
21. Jensen, O. N., Podtelejnikov, A. V., Mann M., Anal. Chem. 1997, 69, 4741-4750.
22. Brancia, F. L., Oliver, S. G., Gaskell, S. J., Rapid Commun. Mass Spectrom. 2000, 14, 2070-2073.
23. Sullivan, A. G., Brancia, F., Tyldesley, R., Bateman, R., et al., Int. J. Mass. Spectrom. 2001, in press.
24. Krause, E., Wenschuh, H., Jungblut, P. R. Anal. Chem. 1999, 77, 4160-4165.
25. Edman, P., Begg, G., Eur. J. Biochem. 1967, 1, 80-91.
26. Jensen, O. N., Vorm, O., Mann, M., Electrophoresis 1996, 17, 938-944.
27. Bonetto, V., Bergman, A. C., Jornvall, H., Sillard, R., Anal. Chem. 1997, 69, 1315-1319.
28. Wilkins, M. R., Gasteiger, E., Tonella, L., Ou, K., et al., J. Mol. Biol. 1998, 278, 599-608.
29. rd ASMS Conf. Mass Spectrom. Allied Topics, ASMS, Atlanta, GA 1995, p. 639.
30. Gay, S., Binz, P.-A., Hochstrasser, D. F., Appel, R. D., Electrophoresis 1999, 20, 3527-3524.
31. Clauser, K. R., Hall, C., Smith, D. M., Webb, J. W., et al., Proc. Nat. Acad. Sci USA 1995, 92, 5072-5076.
32. Perkins, D. N., Pappin, D. J. C., Creasy, D. M., Cottrell, J. S., Electrophoresis 1999, 20, 3551-3567.
33. Bernt, P., Hobohm, U., Langen, H. Electrophoresis 1999, 20, 3521-3526.
34. Gras, R., Muller, M., Gasteiger, E., Gay, S., et al., Electrophoresis 1999, 20, 3535-3550.
35. Zhang, W. Z, Chait, B. T., Anal. Chem. 2000, 72, 2482-2489.