Sequence patterns produced by incomplete enzymatic digestion or one-step Edman degradation of peptide mixtures as probes for protein database searches

Electrophoresis

Volumn 17, Issue 5, 1996, Pages 938-944

  Jensen, Ole N ^a   Vorm, Ole ^a,b   Mann, Matthias ^a  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^b UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

Author keywords

Database searching; Mass spectrometry; Matrix assisted laser desorption ionization; Peptide sequencing; Protein identification

Indexed keywords

AMINO ACIDS; DATABASE SYSTEMS; ELECTROPHORESIS; INFORMATION RETRIEVAL; PEPTIDES; SEARCH ENGINES;

DATABASE SEARCHING; EDMAN DEGRADATION; MATRIX ASSISTED LASER DESORPTION IONIZATION; MATRIXASSISTED LASER DESORPTION-IONIZATION (MALDI); PEPTIDE MIXTURES; PEPTIDE SEQUENCING; PROTEIN IDENTIFICATION; SEQUENCE DATABASE; SEQUENCE PATTERNS; SEQUENCE TAGS;

MASS SPECTROMETRY;

AMINO ACID SEQUENCE; CONFERENCE PAPER; CONTROLLED STUDY; DATA BASE; DIGESTION; MASS SPECTROMETRY; MOLECULAR WEIGHT; NONHUMAN; PEPTIDE MAPPING; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN DEGRADATION; SEQUENCE ANALYSIS; TECHNIQUE; YEAST;

EID: 0030066625     PISSN: 01730835     EISSN: None     Source Type: Journal    
DOI: 10.1002/elps.1150170516     Document Type: Conference Paper

References (21)

1. Patterson, S. D., Aebersold, R., Electrophoresis 1995, 16, 1791-1814.
2. Henzel, W. J., Stults, J. T., Watanabe, C., Abstract of the 3rd Protein Society Symposium, Seattle 1989.
3. Henzel, W. J., Billeci, T. M., Stults, J. T., Wong, S. C., Grimley, C., Watanabe, C., Proc. Natl. Acad. Sci. USA 1993, 90, 5001-5015.
4. James P., Quadroni, M., Carafoli, E., Gonnet, G., Biochem. Biophys. Res. Commun. 1993, 195, 58-64.
5. Mann, M., Højrup, P., Roepstorff, P., Biol. Mass Spectrom. 1993, 22, 338-345.
6. Yates, J. R., Speicher, S., Griffin, P. R., Hunkapiller, T., Anal. Biochem. 1993, 214, 397-408.
7. Pappin, D. J. C., Højrup, P., Bleasby, A. J., Curr. Biol. 1993, 3, 327-332.
8. Rasmussen, H. H., Mørtz, E., Mann, M., Roepstorff, P., Celis, J. E., Electrophoresis 1994, 15, 406-416.
9. Cordwell, S., Wilkins, M., Cerpa-Poljak, A., Gooley, A., Duncan, M., Williams, K., Humphery-Smith, I., Electrophoresis 1995, 16, 438-443.
10. Clauser, K. R., Hall, S. C., Smith, D. M., Webb, J. W., Andrews, L. E., Tran, H. M., Epstein, L. B., Burlingame, A. L., Proc. Natl. Acad. Sci. USA 1995, 92, 5072-5076.
11. Kahn, P., Science 1995, 270, 369-370.
12. Vorm, O., Mann, M., J. Am. Soc. Mass Spectrom. 1994, 5, 955-958.
13. Vorm, O., Roepstorff, P., Mann, M., Anal. Chem. 1994, 66, 3281-3287.
14. Wilm, M., Mann, M., Anal. Chem. 1996, 68, 1-8.
15. Wilm, M., Shevchenko, A., Houthaeve, T., Breit, S., Schweigerer, L., Fotsis, T., Mann, M., Nature 1996, 379, 466-469.
16. Mann, M., Wilm, M., Anal. Chem. 1994, 66, 4390-4399.
17. Shevchenko, A., Wilm, M., Vorm, O., Mann, M., Anal. Chem. 1996, 68, 850-858.
18. Matsudaira, P. A., Practical Guide to Protein and Peptide Purification for Microsequencing, Academic Press, San Diego 1993.
19. Vorm, O., Roepstorff, P., J. Mass Spectrom. 1996, in press.
20. Wang, R., Chait, B. T., Kent, S. B. H., Tech. Prof. Chem. 1994, 5, 19-26.
21. Bartlett-Jones, M., Jeffrey, W. A., Hansen, H. F., Pappin, D. J. C., Rapid Commun. Mass Spectrom. 1994, 8, 737-742.