Cloning and Expression of the Benzoate Dioxygenase Genes from Rhodococcus sp. Strain 19070

Applied and Environmental Microbiology

Volumn 67, Issue 6, 2001, Pages 2507-2514

  Haddad, Sandra ^a   Eby, D Matthew ^a   Neidle, Ellen L ^a  

^a UNIVERSITY OF GEORGIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BENZOIC ACID DERIVATIVE; OXYGENASE; RECOMBINANT PROTEIN;

ARTICLE; BACTERIAL GENE; BIOREMEDIATION; CLASSIFICATION; ENZYMOLOGY; ESCHERICHIA COLI; GENETICS; METABOLISM; MOLECULAR GENETICS; MULTIGENE FAMILY; PHYLOGENY; RHODOCOCCUS; SEQUENCE HOMOLOGY;

BENZOATES; BIODEGRADATION, ENVIRONMENTAL; ESCHERICHIA COLI; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; OXYGENASES; PHYLOGENY; RECOMBINANT PROTEINS; RHODOCOCCUS; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0035377546     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.67.6.2507-2514.2001     Document Type: Article

References (52)

1. Andreoni, V., S. Bernasconi, M. Colombo, J. B. van Beilen, and L. Cavalca. 2000. Detection of genes for alkane and naphthalene cataholism in Rhodococcus sp. strain 1BN. Environ. Microbiol. 2:572-577.
2. Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 72:248-254.
3. Bundy, B. M., A. L. Campbell, and E. L. Neidle. 1998. Similarities of the antABC-encoded anthranilate dioxygenase and the benABC-encoded benzoate dioxygenase of Acinetobacter sp. strain ADP.1 J. Bacteriol. 180:4466-4474.
4. Casadaban, M. J., J. Chou, and S. N. Cohen. 1980. In vitro gene fusions that join an enzymatically active beta-galactosidase segment to amino-terminal fragments of exogenous proteins: Escherichia coli plasmid vectors for the detection and cloning of translational initiation signals. J. Bacteriol. 143:971-980.
5. Collier, L. S., N. N. Nichols, and E. L. Neidle. 1997. benK Encodes a hydrophobic permease-like protein involved in benzoate degradation by Acinetobacter sp. strain ADP1. J. Bacteriol. 179:5943-5946.
6. Cowles, C. E., N. N. Nichols, and C. S. Harwood. 2000. BenR, a XylS homologue, regulates three different pathways of aromatic acid degradation in Pseudomonas putida. J. Bacteriol. 182:6339-6346.
7. De Schrijver, A., and R. De Mot. 1999. Degradation of pesticides by actinomycetes. Crit. Rev. Microbiol. 25:85-119.
8. Deeb, R. A., and L. Alvarez-Cohen. 1999. Temperature effects and substrate interactions during the aerobic biotransformation of BTEX mixtures by toluene-enriched consortia and Rhodococcus rhodochrous. Biotechnol. Bioeng. 62:526-536.
9. Dente, L., G. Cesarini, and R. Cortese. 1983. pEMBL: a new family of single-stranded plasmids. Nucleic Acids Res. 11:1645-1655.
10. Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12(Pt 1):387-395.
11. Eby, D. M., Z. M. Beharry, E. D. Coulter, D. M. Kurtz, and E. L. Neidle. 2000. Characterization and evolution of anthranilate 1,2-dioxygenase from Acinetobacter sp. strain ADP1. J Bacteriol. 183:109-118.
12. Eulberg, D., L. A. Golovleva, and M. Schlömann. 1997. Characterization of catechol catabolic genes from Rhodococcus erythropolis 1CP. J. Bacteriol. 179:370-381.
13. Felsenstein, J. 1989. PHYLIP-Phylogeny inference package (version 3.2). Cladistics 5:164-166.
14. Franklin, F. C. H., M. Bagdasarian, M. M. Bagdasarian, and K. N. Timmis. 1981. Molecular and functional analysis of the TOL plasmid pWW0 from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta cleavage pathway. Proc. Natl. Acud. Sci. USA 78:7458-7462.
15. Gralton, E. M., A. L. Campbell, and E. L. Neidle. 1997. Directed introduction of DNA cleavage sites to produce a high-resolution genetic and physical map of the Acinetobacter sp. strain ADP1 (BD413UE) chromosome. Microbiology 143:1345-1357.
16. Haak, B., S. Fetzner, and F. Lingens. 1995. Cloning, nucleotide sequence, and expression of the plasmid-encoded genes for the two-component 2-halobenzoate 1,2-dioxygenase from Pseudomonas cepacia 2CBS. J. Bacteriol. 177:667-675.
17. Haddad, S. 1998. Ph.D. thesis. Tulane University, New Orleans, La.
18. Hanne, L. F., L. L. Kirk, S. M. Appel, A. D. Narayan, and K. K. Bains. 1993. Degradation and induction specificity in actinomycetes that degrade p-nitrophenol. Appl. Environ. Microbiol. 59:3505-3508.
19. Harayama, S., P. R. Lerhbach, and K. N. Timmis. 1984. Transposon mutagenesis analysis of meta-cleavage pathway operon genes of the TOL plasmid of Pseudomonas putida mt-2. J. Bacteriol. 160:251-255.
20. Harayama, S., M. Rekik, A. Bairoch, E. L. Neidle, and L. N. Ornston. 1991. Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases. J. Bacteriol. 173:7540-7548.
21. Harayama, S., M. Rekik, and K. N. Timmis. 1986. Genetic analysis of a relaxed substrate specificity aromatic ring dioxygenase, toluate 1,2-dioxygenase, encoded by TOL plasmid pWW0 of Pseudomonas putida. Mol. Gen. Genet. 202:226-234.
22. Harayama, S., and K. N. Timmis. 1989. Catabolism of aromatic hydrocarbons by Pseudomonas, p. 151-174. In D. A. Hopwood and K. Chater (ed.), Genetics of bacterial diversity. Academic Press, Inc., New York, N.Y.
23. Harwood, C. S., and R. E. Parales. 1996. The B-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microhiol. 50:553-590.
24. Hopwood, D. A., M. J. Bibb, K. F. Chater, T. Kiesser, C. J. Bruton, H. M. Kiesser, D. J. Lydiale, C. P. Smith, J. M. Ward, and H. Schrempf. 1985. Genetic manipulation of Streptomyces - a laboratory manual. The John Innes Foundation, Norwich, United Kingdom.
25. Juni, E., and A. Janik. 1969. Transformation of Acinetobacter calcoacetictus (Bacterium anitratum). J. Bacteriol. 98:281-288.
26. Kulakov, L. A., V. A. Delcroix, M. J. Larkin, V. N. Ksenzenko, and A. N. Kulakova. 1998. Cloning of new Rhodococcus extradiol dioxygenase genes and study of their distribution in different Rhodococcus strains. Microbiology 144:955-963.
27. Lofgren, J., S. Haddad, and K. Kendall. 1995. Metabolism of alkanes by Rhodococcus erythropolis, p. 252-263. In D. W. Tedder and F. G. Pohland (ed.), Emerging technologies in hazardous waste management, vol. V. American Chemical Society, Washington, D.C.
28. Martin, V. J. J., and W. W. Mohn. 1999. A novel aromatic-ring-hydroxylating dioxygenase from the diterpenoid-degrading bacterium Pseudomonas abietaniphilia BKME-9. J. Bacteriol. 181:2675-2682.
29. McCarthy, A. J., and S. T. Williams. 1992. Actinomycetes as agents of biodegradation in the environment - a review. Gene 115:189-192.
30. Murray, K., and P. A. Williams. 1974. Role of catechol and the methylcatechols as inducers of aromatic metabolism in Pseudomonas putida. J. Bacteriol. 117:1153-1157.
31. Nakazawa, T., and T. Yokota. 1973. Benzoate metabolism in Pseudomonas putida (arvilla) mt-2: demonstration of two benzoate pathways. J. Bacteriol. 115:262-267.
32. Neidle, E., C. Harnett, L. N. Ornston, A. Bairoch, M. Rekik, and S. Harayama. 1992. cis-Diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily. Eur. J. Biochem. 204:113-120.
33. Neidle, E. L., C. Hartnett, S. Bonitz, and L. N. Ornston. 1988. DNA sequence of the Acinetobacter calcoaceticus catechol 1,2-dioxygenase I structural gene catA: evidence for evolutionary divergence of intradiol dioxygenases by acquisition of DNA sequence repetitions. J. Bacteriol. 170:4874-4880.
34. Neidle, E. L., M. K. Shapiro, and L. N. Ornston. 1987. Cloning and expression in Escherichia coli of Acinetobacter calcouceticus genes for benzoate degradation. J. Bacteriol. 169:5496-5503.
35. Ngai, K.-L., E. L. Neidle, and L. N. Ornston. 1990. Catechol and chlorocatechol 1,2-dioxygenase. Methods Enzymol. 188:122-126.
36. Reiner, A. M. 1971. Metabolism of benzoic acid by bacteria: 3,5-cyclohexadiene-1,2-diol-1-carboxylic acid is an intermediate in the formation of catechol. J. Bacteriol. 108:89-94.
37. Reiner, A. M., and G. D. Hegeman. 1971. Metabolism of benzoic acid by bacteria. Accumulation of (-)-3,5-cyclohexadiene-1,2-diol-1-carboxylic acid by a mutant strain of Alcaligenes eutrophus. Biochemistry 10:2530-2536.
38. Sala-Trepat, J. M., and W. C. Evans. 1971. The meta cleavage pathway of catechol by Azobacter species. Eur. J. Biochem. 20:400-413.
39. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory. Cold Spring Harbor, N.Y.
40. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Nat. Acad. Sci. USA 74:5463-5467.
41. Schreiner, A., K. Fuchs, F. Lottspeich, H. Poth, and F. Lingens. 1991. Degradation of 2-methylaniline in Rhodococcus rhodochrous: cloning and expression of two clustered catechol 2,3-dioxygenase genes from strain CTM. J. Gen. Microbiol. 137:2041-2048.
42. Shanley, M. S., E. L. Neidle, R. E. Parales, and L. N. Ornston. 1986. Cloning and Expression of Acinetobacter calcoaceticus catBCDE Genes in Pseudomonas putida and Escherichia coli. J. Bacteriol. 165:557-563.
43. Smith, C. L., and C. R. Cantor. 1987. Purification, specific fragmentation and separation of large DNA molecules. Methods Enzymol. 155:449-467.
44. Spooner, R. A., M. Bagdasarian, and F. C. H. Franklin. 1987. Activation of the xylDLEGF promoter of the TOL toluene-xylene degradation pathway by overproduction of the xylS regulatory gene product. J. Bacteriol. 169:3581-3586.
45. Uz, I., Y. P. Duan, and A. Ogram. 2000. Characterization of the naphthalenedegrading bacterium. Rhodococcus opacus M213. FEMS Microbiol. Lett. 185:231-238.
46. Vanderberg, L. A., R. Krieger-Gmmnine, and M. N. Taylor. 2000. Evidence for diverse oxidations in the catabolism of toluene by Rhodococcus rhodochrous strain OFS. Appl. Microbiol. Biotechnol. 53:447-452.
47. Warhurst, A. M., and C. A. Fewson. 1994. Biotransformations catalyzed by the genus Rhodococcus. Crit. Rev. Biotech. 14:29-73.
48. Williams, P. A., and K. Murray. 1974. Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: evidence for the existence of a TOL plasmid. J. Bacteriol. 120:416-423.
49. Yamaguchi, M., and H. Fujisawa. 1978. Characterization of NADH-cytochrome c reductase, a component of benzoate 1,2-dioxygenase system from Pseudomonas arvilla C-1. J. Biol. Chem. 253:8848-8853.
50. Yanisch-Perron, C. J., J. Vieira, and J. Messing. 1985. Improved M13 cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
51. Zeyer, J., P. R. Lehrbach, and K. N. Timmis. 1985. Use of cloned genes of Pseudomonas TOL plasmid to effect biotransformation of benzoates to cisdihydrodiols and catechols by Escherichia coli cells. Appl. Environ. Microbiol. 50:1409-1413.
52. Zhang, C., M. Huang, and B. W. Holloway. 1993. Mapping of the ben, ant and cat genes of Pseudomonas aeruginosa and evolutionary relationship of the ben region of P. aeruginosa and P. putida. FEMS Microbiol. Lett. 108: 303-310.