-
1
-
-
0028685325
-
Constraint satisfaction techniques for modeling large complexes: Application to the central domain of 16s ribosomal RNA
-
Stanford, CA: Stanford University
-
Altman, R. B., Weiser, B., & Noller, H. F. (1994). Constraint satisfaction techniques for modeling large complexes: application to the central domain of 16s ribosomal RNA. In Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, Stanford, CA: Stanford University, pages 10-18.
-
(1994)
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology
, pp. 10-18
-
-
Altman, R.B.1
Weiser, B.2
Noller, H.F.3
-
2
-
-
0026593806
-
Thermodynamic Parameters for Loop formation in RNA and DNA Hairpin Tetraloops
-
Antao, V. P., & Tinoco, I. (1992). Thermodynamic Parameters for Loop Formation in RNA and DNA Hairpin Tetraloops. Nucleic Acids Research, 20: 819-824.
-
(1992)
Nucleic Acids Research
, vol.20
, pp. 819-824
-
-
Antao, V.P.1
Tinoco, I.2
-
3
-
-
0002812302
-
Using inference to reduce arc-consistency computation
-
Montréal, Canada
-
Bessiere, C., Freuder, E. C., & Régin, J. C. (1995). Using inference to reduce arc-consistency computation. In Proceedings of the 14th IJCAI, Montréal, Canada.
-
(1995)
Proceedings of the 14th IJCAI
-
-
Bessiere, C.1
Freuder, E.C.2
Régin, J.C.3
-
4
-
-
0029986908
-
Palingol: A declarative programming language to describe nucleic acids' secondary structures and to scan sequence databases
-
Billoud, B., Kontic, M., & Viari, A. (1996). Palingol: a declarative programming language to describe nucleic acids' secondary structures and to scan sequence databases. Nucleic Acids Research, 24(8): 1395-1403.
-
(1996)
Nucleic Acids Research
, vol.24
, Issue.8
, pp. 1395-1403
-
-
Billoud, B.1
Kontic, M.2
Viari, A.3
-
5
-
-
84976668743
-
Algorithm 457: Finding all cliques of an undirected graph
-
Bron, C., & Kerbosh, J. (1973). Algorithm 457: finding all cliques of an undirected graph. Communications of the ACM, 16(9): 575-577.
-
(1973)
Communications of the ACM
, vol.16
, Issue.9
, pp. 575-577
-
-
Bron, C.1
Kerbosh, J.2
-
6
-
-
0023984838
-
An improved algorithm for nucleic acid secondary structure dispaly
-
Bruccoleri, R. E., & Heinrich, G. (1988). An improved algorithm for nucleic acid secondary structure dispaly. Computer Applications in BioSciences, 4(1): 167-173.
-
(1988)
Computer Applications in BioSciences
, vol.4
, Issue.1
, pp. 167-173
-
-
Bruccoleri, R.E.1
Heinrich, G.2
-
7
-
-
0030789737
-
Essa: An integrated and interactive computer tool for analysing RNA secondary structure
-
Chetouani, F., Monestie, P., Thebault, P., Gaspin, C., & Michot, B. (1997). Essa: an integrated and interactive computer tool for analysing RNA secondary structure. Nucleic Acid Research, 25(17).
-
(1997)
Nucleic Acid Research
, vol.25
, Issue.17
-
-
Chetouani, F.1
Monestie, P.2
Thebault, P.3
Gaspin, C.4
Michot, B.5
-
8
-
-
0028715431
-
Genetic map construction with constraints
-
Stanford, CA: Stanford University
-
Clark, D. A., Rawlings, C. J., & Doursenot, S. (1994). Genetic map construction with constraints. In Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, Stanford, CA: Stanford University, pages 78-86.
-
(1994)
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology
, pp. 78-86
-
-
Clark, D.A.1
Rawlings, C.J.2
Doursenot, S.3
-
9
-
-
0023842374
-
Network-based heuristics for constraint-satisfaction problems
-
Dechter, R. J., & Pearl, J. (1987). Network-based heuristics for constraint-satisfaction problems. Artificial Intelligence, 34(1): 1-38.
-
(1987)
Artificial Intelligence
, vol.34
, Issue.1
, pp. 1-38
-
-
Dechter, R.J.1
Pearl, J.2
-
11
-
-
0019899621
-
A sufficient condition for backtrack-free search
-
Freuder, E. C. (1982). A sufficient condition for backtrack-free search. Journal of the ACM, 29(1): 24-32.
-
(1982)
Journal of the ACM
, vol.29
, Issue.1
, pp. 24-32
-
-
Freuder, E.C.1
-
12
-
-
0022144787
-
A sufficient condition for backtrack-bounded search
-
Freuder, E. C. (1985). A sufficient condition for backtrack-bounded search. Journal of the ACM, 32(4): 755-766.
-
(1985)
Journal of the ACM
, vol.32
, Issue.4
, pp. 755-766
-
-
Freuder, E.C.1
-
14
-
-
0028823370
-
An interactive framework for RNA secondary structure prediction with a dynamical treatment of constraints
-
Gaspin, C., & Westhof, E. (1995). An interactive framework for RNA secondary structure prediction with a dynamical treatment of constraints. Journal of Molecular Biology, 254: 163-174.
-
(1995)
Journal of Molecular Biology
, vol.254
, pp. 163-174
-
-
Gaspin, C.1
Westhof, E.2
-
15
-
-
0041140892
-
Algorithm graph theory and perfect graphs
-
Ed. Werner Rheinbolt, Academic Press, Inc., Harcourt Brace Jovanovich, Publishers
-
Golumbic, M. C. (1992). Algorithm graph theory and perfect graphs. Computer Science and Applied Mathematics, Ed. Werner Rheinbolt, Academic Press, Inc., Harcourt Brace Jovanovich, Publishers.
-
(1992)
Computer Science and Applied Mathematics
-
-
Golumbic, M.C.1
-
16
-
-
0342896784
-
Secondary structure prediction of RNA
-
M. J. Bishop and C. J. Rawlings, eds. (Oxford: IRL)
-
Gouy, M. (1987). Secondary structure prediction of RNA. Nucleic Acids and Protein Sequence Analysis, A Practical Approach, pages 259-284. M. J. Bishop and C. J. Rawlings, eds. (Oxford: IRL)
-
(1987)
Nucleic Acids and Protein Sequence Analysis, a Practical Approach
, pp. 259-284
-
-
Gouy, M.1
-
17
-
-
0019067870
-
Increasing tree search efficiently for constraint satisfaction problems
-
Haralick, R. M., & Elliot, G. L. (1980). Increasing tree search efficiently for constraint satisfaction problems. Artificial Intelligence, 14: 263-313.
-
(1980)
Artificial Intelligence
, vol.14
, pp. 263-313
-
-
Haralick, R.M.1
Elliot, G.L.2
-
19
-
-
0345005029
-
Improved predictions of secondary structures for RNA
-
Jaeger, J. A., Turner, D. H., & Zuker, M. (1989). Improved predictions of secondary structures for RNA. Proceedings of the National Academy of Sciences USA, 86: 7706-7710.
-
(1989)
Proceedings of the National Academy of Sciences USA
, vol.86
, pp. 7706-7710
-
-
Jaeger, J.A.1
Turner, D.H.2
Zuker, M.3
-
20
-
-
0024827733
-
Phylogenetic comparative analysis of RNA secondary structures
-
James, B. D., Olsen, G. J., & Pace, N. R. (1989). Phylogenetic comparative analysis of RNA secondary structures. Methods in Enzymology, 180: 227-239.
-
(1989)
Methods in Enzymology
, vol.180
, pp. 227-239
-
-
James, B.D.1
Olsen, G.J.2
Pace, N.R.3
-
21
-
-
0030604698
-
Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs
-
Kiss-Las̀zlo, Z., Henry, Y., Bachellerie, J.-P., Caizergues-Ferrer, M., & Kiss, T. (1996). Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Cell, 85: 1077-1088.
-
(1996)
Cell
, vol.85
, pp. 1077-1088
-
-
Kiss-Las̀zlo, Z.1
Henry, Y.2
Bachellerie, J.-P.3
Caizergues-Ferrer, M.4
Kiss, T.5
-
22
-
-
0026550371
-
CPROP: A rule-based program for constructing genetic maps
-
Letovsky, S., & Berlyn, M. B. (1992). CPROP: a rule-based program for constructing genetic maps. Genomics, 12: 435-446.
-
(1992)
Genomics
, vol.12
, pp. 435-446
-
-
Letovsky, S.1
Berlyn, M.B.2
-
23
-
-
49449120803
-
Consistency in networks of relations
-
Mackworth, A. K. (1977). Consistency in networks of relations. Artificial Intelligence, 8: 99-118.
-
(1977)
Artificial Intelligence
, vol.8
, pp. 99-118
-
-
Mackworth, A.K.1
-
24
-
-
0026077710
-
The combination of symbolic and numerical computation for three-dimensional modeling of RNA
-
Major, F., Turcotte, M., Gautheret, D., Lapalme, G., Fillion, E., & Cedergren, R. (1991). The combination of symbolic and numerical computation for three-dimensional modeling of RNA. Science, 253: 1255-1260.
-
(1991)
Science
, vol.253
, pp. 1255-1260
-
-
Major, F.1
Turcotte, M.2
Gautheret, D.3
Lapalme, G.4
Fillion, E.5
Cedergren, R.6
-
25
-
-
0025264854
-
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
-
McCaskill, J. (1990). The equilibrium partition function and base pair binding probabilities for RNA secondary structure. Biopolymers, 29: 1105-1119.
-
(1990)
Biopolymers
, vol.29
, pp. 1105-1119
-
-
McCaskill, J.1
-
26
-
-
0025678737
-
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel, F. & Westhof, E. (1990). Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. Journal of Molecular Biology, 216: 585-610.
-
(1990)
Journal of Molecular Biology
, vol.216
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
27
-
-
0029822198
-
Visualizing the logic behind RNA self-assembly
-
Michel, F., & Westhof, E. (1996). Visualizing the logic behind RNA self-assembly. Science, 273: 1676-1677.
-
(1996)
Science
, vol.273
, pp. 1676-1677
-
-
Michel, F.1
Westhof, E.2
-
29
-
-
0027526974
-
Automatic display of RNA secondary structures
-
Muller, G., Gaspin, C., Etienne, A., & Westhof, E. (1993). Automatic display of RNA secondary structures. Computer Applications in BioSciences, 9(5): 551-561.
-
(1993)
Computer Applications in BioSciences
, vol.9
, Issue.5
, pp. 551-561
-
-
Muller, G.1
Gaspin, C.2
Etienne, A.3
Westhof, E.4
-
30
-
-
0029992634
-
Visualization of RNA secondary structures using highly parallel computers
-
Nakaya, A., Taura, K., Yamamoto, K., & Yonezawa, A. (1996). Visualization of RNA secondary structures using highly parallel computers. Computer Applications in BioSciences, 12(3): 205-211.
-
(1996)
Computer Applications in BioSciences
, vol.12
, Issue.3
, pp. 205-211
-
-
Nakaya, A.1
Taura, K.2
Yamamoto, K.3
Yonezawa, A.4
-
32
-
-
0002213113
-
Algorithms for loop matching
-
Nussinov, R., Pieczenick, G., Griggs, J. R., & Kleitman, D. J. (1978). Algorithms for loop matching. SIAM Journal of Applied Mathematics, 35: 68-82.
-
(1978)
SIAM Journal of Applied Mathematics
, vol.35
, pp. 68-82
-
-
Nussinov, R.1
Pieczenick, G.2
Griggs, J.R.3
Kleitman, D.J.4
-
33
-
-
0028899499
-
RNA_d2: A computer program for editing and display RNA secondary structures
-
Perrochon-Dorisse, J., Chetouani, F., Aurel, S., Iscolo, N., & Michot, B. (1995). RNA_d2: a computer program for editing and display RNA secondary structures. Computer Applications in BioSciences, 11(1): 101-109.
-
(1995)
Computer Applications in BioSciences
, vol.11
, Issue.1
, pp. 101-109
-
-
Perrochon-Dorisse, J.1
Chetouani, F.2
Aurel, S.3
Iscolo, N.4
Michot, B.5
-
34
-
-
0028838032
-
Molecular dissection of the pseudoknot governing the translational regulation of Escherichia coli ribosomal protein S15
-
Philippe, C., Bnard, L., Portier, C., Westhof, E., Ereshmann, B., & Ehresmann. C. (1995). Molecular dissection of the pseudoknot governing the translational regulation of Escherichia coli ribosomal protein S15. Nucleic Acids Research, 23: 18-28.
-
(1995)
Nucleic Acids Research
, vol.23
, pp. 18-28
-
-
Philippe, C.1
Bnard, L.2
Portier, C.3
Westhof, E.4
Ereshmann, B.5
Ehresmann, C.6
-
35
-
-
0030829855
-
RnaViz, a program for the visualisation of RNA secondary structure
-
De Rijk, P., & De Wachter, R. (1997). RnaViz, a program for the visualisation of RNA secondary structure. Nucleic Acids Research, 25(22): 4679-4684.
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.22
, pp. 4679-4684
-
-
De Rijk, P.1
De Wachter, R.2
-
36
-
-
0019563065
-
Planning with constraints (MOLGEN:part1)
-
Stefik, M. (1981). Planning with constraints (MOLGEN:part1). Artificial Intelligence, 16: 111-170.
-
(1981)
Artificial Intelligence
, vol.16
, pp. 111-170
-
-
Stefik, M.1
-
38
-
-
0023785594
-
RNA structure prediction
-
Turner, D. H., Sugimoto, N., & Freier, S. M. (1988). RNA structure prediction. Annual Review of Biophysics and Chemistry, 17: 167-192.
-
(1988)
Annual Review of Biophysics and Chemistry
, vol.17
, pp. 167-192
-
-
Turner, D.H.1
Sugimoto, N.2
Freier, S.M.3
-
39
-
-
0028000994
-
Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding
-
Walter, A. E., Turner, D. H., Kim, J., Lytlle, M. H., Muller, P., Mathews, D. H., & Zuker, M. (1994). Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding. Proceedings of the National Academy of Sciences USA, 91: 9218-9222.
-
(1994)
Proceedings of the National Academy of Sciences USA
, vol.91
, pp. 9218-9222
-
-
Walter, A.E.1
Turner, D.H.2
Kim, J.3
Lytlle, M.H.4
Muller, P.5
Mathews, D.H.6
Zuker, M.7
-
40
-
-
0342896783
-
Computer-aided structural biochemistry of ribonucleic acids
-
D. L. Beveridge and R. Lavery, eds., Adenine Press, New York
-
Westhof, E., Romby, P., Ehresmann, C., & Ehresmann, B. (1990). Computer-aided structural biochemistry of ribonucleic acids. In D. L. Beveridge and R. Lavery, eds., Theoretical Biochemistry and Molecular Biophysics, pages 399-409. Adenine Press, New York.
-
(1990)
Theoretical Biochemistry and Molecular Biophysics
, pp. 399-409
-
-
Westhof, E.1
Romby, P.2
Ehresmann, C.3
Ehresmann, B.4
-
41
-
-
0027686742
-
A constraint logic programming framework for constructing DNA restriction maps
-
Yap, R. H. C. (1993). A constraint logic programming framework for constructing DNA restriction maps. Artificial Intelligence in Medicine, 5: 447-464.
-
(1993)
Artificial Intelligence in Medicine
, vol.5
, pp. 447-464
-
-
Yap, R.H.C.1
-
42
-
-
0027901975
-
A constraint reasoning system for automating sequence-specific resonance assignments from multidimensional protein NMR spectra
-
Bethesda, MD: National Library of Medicine
-
Zimmerman, D. E., Kulikowski, C. A., & Montelione, G. T. (1993). A constraint reasoning system for automating sequence-specific resonance assignments from multidimensional protein NMR spectra. In Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology. Bethesda, MD: National Library of Medicine, pages 447-455.
-
(1993)
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology
, pp. 447-455
-
-
Zimmerman, D.E.1
Kulikowski, C.A.2
Montelione, G.T.3
-
43
-
-
0024477261
-
On finding all suboptimal foldings of a RNA molecule
-
Zuker, M. (1989). On finding all suboptimal foldings of a RNA molecule. Science, 244: 48-52.
-
(1989)
Science
, vol.244
, pp. 48-52
-
-
Zuker, M.1
-
44
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
Zuker, M., & Stiegler, P. (1981). Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Research, 9: 133-148.
-
(1981)
Nucleic Acids Research
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
|