메뉴 건너뛰기




Volumn 70, Issue 2, 2001, Pages 149-167

Analysis of soil microbial diversity: Methods, potentiality, and prospects

Author keywords

Culture techniques; Microbial communities; Microbial diversity; Molecular genetic methods; Soil

Indexed keywords

BACTERIUM; GENETICS; MICROBIOLOGICAL EXAMINATION; MICROBIOLOGY; REVIEW;

EID: 0035290657     PISSN: 00263656     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (6)

References (79)
  • 3
    • 33746947998 scopus 로고    scopus 로고
    • Russian source
  • 4
    • 33746982692 scopus 로고    scopus 로고
    • Russian source
  • 5
    • 0031415425 scopus 로고    scopus 로고
    • Soil microbial diversity: Present and future considerations
    • Kennedy A.C., Gewin V.L. Soil microbial diversity: present and future considerations // Soil Sei. 1997. V. 162. .Ne 9. p. 607-617
    • (1997) Soil Sei. , vol.162 , Issue.9 , pp. 607-617
    • Kennedy, A.C.1    Gewin, V.L.2
  • 6
    • 33747012989 scopus 로고    scopus 로고
    • Russian source
  • 7
    • 0345657648 scopus 로고    scopus 로고
    • Soil microbial diversity research: Whither to now?
    • Tate R.L. Soil microbial diversity research: whither to now? // Soil Sei. 1997. V. 162. No 9. P. 605-606.
    • (1997) Soil Sei. , vol.162 , Issue.9 , pp. 605-606
    • Tate, R.L.1
  • 8
    • 33746953148 scopus 로고    scopus 로고
    • Russian source
  • 9
    • 0033214501 scopus 로고    scopus 로고
    • The Earth's bounty: Assessing and accessing soil microbial diversity
    • Rondon M.R., Goodman RM., Handelsman J. The Earth's bounty: assessing and accessing soil microbial diversity // Trends Biotechnol. 1999. V. 17. P. 403-409.
    • (1999) Trends Biotechnol. , vol.17 , pp. 403-409
    • Rondon, M.R.1    Goodman, R.M.2    Handelsman, J.3
  • 11
    • 0030497690 scopus 로고    scopus 로고
    • Total bacterial diversity in soil and sediment communities: A review
    • Torsvik V., S or heim R., Goksoyr J. Total bacterial diversity in soil and sediment communities: a review // J. Indust. Microbiol. 1996. V. 17. P. 170-178.
    • (1996) J. Indust. Microbiol. , vol.17 , pp. 170-178
    • Torsvik, V.1    Sorheim, R.2    Goksoyr, J.3
  • 12
    • 0030802010 scopus 로고    scopus 로고
    • Use of 16S rDNA clone libraries to study changes in a microbial community resulting from ex situ perturbation of a subsurface sediment
    • Chandler O.P., Brockman F.J., Fredrickson J.K. Use of 16S rDNA clone libraries to study changes in a microbial community resulting from ex situ perturbation of a subsurface sediment // FEMS Microbiol. Rev. 1997. V. 20. No 3. P. 217-230.
    • (1997) FEMS Microbiol. Rev. , vol.20 , Issue.3 , pp. 217-230
    • Chandler, O.P.1    Brockman, F.J.2    Fredrickson, J.K.3
  • 13
    • 0030483312 scopus 로고    scopus 로고
    • Molecular evidence for the presence of novel actinomycete lineages in a temperate forest soil
    • McVeigh, Munro J., Embley T.M. Molecular evidence for the presence of novel actinomycete lineages in a temperate forest soil // J. Industrial Microbiol. 1996. V. 17. P. 197-204.
    • (1996) J. Industrial Microbiol. , vol.17 , pp. 197-204
    • McVeigh Munro, J.1    Embley, T.M.2
  • 14
    • 0000314613 scopus 로고
    • Analysis of DNA extracted from microbial communities
    • Eds. Ritz K., Dighton J., Gillre K.E. Chichester: John Wiley & Sons
    • Harris D. Analysis of DNA extracted from microbial communities // Beyond the biomass / Eds. Ritz K., Dighton J., Gillre K.E. Chichester: John Wiley & Sons, 1994. P. 111-118.
    • (1994) Beyond the Biomass , pp. 111-118
    • Harris, D.1
  • 15
    • 0028946084 scopus 로고
    • Phylogenic identification and in situ detection of individual microbial cells without cultivation
    • Amann R.I., Ludwig W., Schleifer K.-H. Phylogenic identification and in situ detection of individual microbial cells without cultivation // Microbiol. Rev. 1995. V. 59. No 1. P. 143-169.
    • (1995) Microbiol. Rev. , vol.59 , Issue.1 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 16
    • 0014407722 scopus 로고
    • Repeated sequences in DNA
    • Jfc 3841.
    • Britten R.Y., Kohne D.E. Repeated sequences in DNA // Science. 1968. V. 161. Jfc 3841. P. 529-540.
    • (1968) Science. , vol.161 , pp. 529-540
    • Britten, R.Y.1    Kohne, D.E.2
  • 17
    • 0002516928 scopus 로고
    • Identifying and culturing the "unculturables": A challenge for microbiologists
    • Eds. Allsopp D., Colwell R., Hawksworth D. New York: CAB Internation
    • Ward N., Rainey F.A., Gobel B., Stackebrandt E. Identifying and culturing the "unculturables": a challenge for microbiologists // Microbial diversity and ecosystem function / Eds. Allsopp D., Colwell R., Hawksworth D. New York: CAB Internation, 1995. P. 89-108.
    • (1995) Microbial Diversity and Ecosystem Function , pp. 89-108
    • Ward, N.1    Rainey, F.A.2    Gobel, B.3    Stackebrandt, E.4
  • 18
    • 0026764237 scopus 로고
    • Occurence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • Lie sac k W., Stackebrandt E. Occurence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment//J. Bacteriol. 1992. V. 74. No 15. P. 5071-5078.
    • (1992) J. Bacteriol. , vol.74 , Issue.15 , pp. 5071-5078
    • Lie Sac K, W.1    Stackebrandt, E.2
  • 19
    • 0027441283 scopus 로고
    • Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis
    • Stackebrandt E., Liesack W., Goebel B.M. Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis // FASEB J. 1993. V. 7. P. 232-236.
    • (1993) FASEB J. , vol.7 , pp. 232-236
    • Stackebrandt, E.1    Liesack, W.2    Goebel, B.M.3
  • 20
    • 0028983870 scopus 로고
    • Molecular phylogenetic analysis of a soil microbial community in a soybean field
    • Ueda T., Suga Y., Matsuguchi T. Molecular phylogenetic analysis of a soil microbial community in a soybean field //Eur. J. Soil Sei. 1995. V. 46. P. 415-421.
    • (1995) Eur. J. Soil Sei. , vol.46 , pp. 415-421
    • Ueda, T.1    Suga, Y.2    Matsuguchi, T.3
  • 22
    • 0030739128 scopus 로고    scopus 로고
    • Analysis of actinomycete communities by specific amplification of genus encoding 16S rRNA and gelelectrophoretic separation in denaturing gradients
    • Heuer H., Krsek M., Baker P., Smalla K., Wellington E. Analysis of actinomycete communities by specific amplification of genus encoding 16S rRNA and gelelectrophoretic separation in denaturing gradients // Appl. Environ. MicrobioL 1997. V. 63. M 8. P. 3233-3241.
    • (1997) Appl. Environ. MicrobioL , vol.63 , Issue.8 , pp. 3233-3241
    • Heuer, H.1    Krsek, M.2    Baker, P.3    Smalla, K.4    Wellington, E.5
  • 23
    • 0023184331 scopus 로고
    • Bacteral evolution
    • Woese C.R. Bacteral evolution // Microbiol. Rev. 1987. V. 51. P. 221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 24
    • 0028055018 scopus 로고
    • The winds of (evolutionary) change: Breathing new life into microbiology
    • Ks 1.
    • Olsen GJ., Woese C.R., OyerbeekR. The winds of (evolutionary) change: breathing new life into microbiology //J. Bacteriol. 1994. V. 176. Ks 1. P. 1-6.
    • (1994) J. Bacteriol. , vol.176 , pp. 1-6
    • Olsen, G.J.1    Woese, C.R.2    OyerbeekR3
  • 25
    • 0042411506 scopus 로고
    • Exploration of prokaryotic diversity and ecosystem function
    • Eds. Allsopp D., Colwell R.R., Hawksworth D.L. New York: CAB Internation
    • Swings J. Exploration of prokaryotic diversity and ecosystem function // Microbial diversity and ecosystem function/Eds. Allsopp D., Colwell R.R., Hawksworth D.L. New York: CAB Internation, 1995. P. 371-379.
    • (1995) Microbial Diversity and Ecosystem Function , pp. 371-379
    • Swings, J.1
  • 27
    • 0021234947 scopus 로고
    • Mycoplasmas (Mollicutes) have a low number of rRNA genes
    • Amikam D., Glaser G., Razin S. Mycoplasmas (Mollicutes) have a low number of rRNA genes // J. Bacteriol. 1984. V. 158. P. 376-378.
    • (1984) J. Bacteriol. , vol.158 , pp. 376-378
    • Amikam, D.1    Glaser, G.2    Razin, S.3
  • 29
    • 33746979897 scopus 로고    scopus 로고
    • Russian source
  • 30
    • 0028000788 scopus 로고
    • Phenotypic and genotypic diversity of fluorescent pseudomonads isolated from field-grown sugar beet
    • Rainey P.B., Bailey MJ., Thompson I.P. Phenotypic and genotypic diversity of fluorescent pseudomonads isolated from field-grown sugar beet // Microbiology. 1994. V. 140. P. 2315-2331.
    • (1994) Microbiology. , vol.140 , pp. 2315-2331
    • Rainey, P.B.1    Bailey, M.J.2    Thompson, I.P.3
  • 31
    • 0025919296 scopus 로고
    • Phylogenic analysis of a natural marine bacterioplancton population by rRNA gene cloning and sequencing
    • Ns 5.
    • Britschgi T.B., Giovannoni S.J. Phylogenic analysis of a natural marine bacterioplancton population by rRNA gene cloning and sequencing // Appl. Environ. Microbiol. 1991. V. 57. Ns 5. P. 1707-1713.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 1707-1713
    • Britschgi, T.B.1    Giovannoni, S.J.2
  • 33
    • 0026532736 scopus 로고
    • Molecular and microscopic identification of sulfat-reducting bacteria in multispesies biofilms
    • AmannR.1., StromleyR.,DevereuxR., KeyR., Stahl D A. Molecular and microscopic identification of sulfat-reducting bacteria in multispesies biofilms // Appl. Environ. Microbiol. 1992. V. 58. P. 614-623.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 614-623
    • Amann, R.I.1    Stromley, R.2    Devereux, R.3    Key, R.4    Stahl, D.A.5
  • 34
    • 0027068041 scopus 로고
    • Phylogenetic oligodeoxynucleotide probes the major subclasses of proteobacteria: Problems and solutions
    • Manz W., Amann R.I., Ludwig W., Schleifer R.-H. Phylogenetic oligodeoxynucleotide probes the major subclasses of proteobacteria: problems and solutions // Syst. Appl. Microbiol. 1992. V. 15. P. 593-400.
    • (1992) Syst. Appl. Microbiol. , vol.15 , pp. 593-1400
    • Manz, W.1    Amann, R.I.2    Ludwig, W.3    Schleifer, R.-H.4
  • 35
    • 33747015897 scopus 로고    scopus 로고
    • Russian source
  • 36
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plancton
    • Fuhrman JA., McCallum K.rDavisAA. Novel major archaebacterial group from marine plancton // Nature. 1994. V. 356. P. 148-149.
    • (1994) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 37
    • 0028594902 scopus 로고    scopus 로고
    • High abundance of Archae in Antarctic marine picoplancton
    • Belong E.F., Wu K.Y., Prezelin B.B., Jovine R.V. High abundance of Archae in Antarctic marine picoplancton // Nature. V. 371. P. 695-697.
    • Nature. V. , vol.371 , pp. 695-697
    • Belong, E.F.1    Wu, K.Y.2    Prezelin, B.B.3    Jovine, R.V.4
  • 38
    • 33746981439 scopus 로고    scopus 로고
    • Russian source
  • 39
    • 33747011821 scopus 로고    scopus 로고
    • Russian source
  • 40
    • 33746949011 scopus 로고    scopus 로고
    • Russian source
  • 41
    • 33747003364 scopus 로고    scopus 로고
    • Russian source
  • 42
    • 33747012809 scopus 로고    scopus 로고
    • Russian source
  • 43
    • 0030872627 scopus 로고    scopus 로고
    • Bacterial diversity in Adirondack mountain lakes as revealed by 16S RNA gene sequences
    • Ks 7.
    • Hiorns W.D., Methe B A., Nierzwicki-Baner SA. Bacterial diversity in Adirondack mountain lakes as revealed by 16S RNA gene sequences // Appl. Environ. Microbiol. V. 63. Ks 7. P. 2957-2960.
    • Appl. Environ. Microbiol. , vol.63 , pp. 2957-2960
    • Hiorns, W.D.1    Methe, B.A.2    Nierzwicki-Baner, S.A.3
  • 45
    • 0030868433 scopus 로고    scopus 로고
    • Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
    • Xs 9.
    • Kuske C.R., Barns S.M., Busch J.D. Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions // Appl. Environ. Microbiol. 1997. V. 63. Xs 9. P. 3614-3621.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3614-3621
    • Kuske, C.R.1    Barns, S.M.2    Busch, J.D.3
  • 46
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Ka 18.
    • Hugenholtz P., Goebel B.M., Pace N.R. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity // J. Bacteriol. 1998. V. 180. Ka 18. P. 4765-4774.
    • (1998) J. Bacteriol. , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 47
    • 33746942389 scopus 로고    scopus 로고
    • Russian source
  • 48
    • 33747011287 scopus 로고    scopus 로고
    • Russian source
  • 49
    • 33746988196 scopus 로고    scopus 로고
    • Russian source
  • 50
    • 33746962346 scopus 로고    scopus 로고
    • Russian source
  • 51
    • 33747028413 scopus 로고    scopus 로고
    • Russian source
  • 52
    • 33747027858 scopus 로고    scopus 로고
    • Russian source
  • 53
    • 33747021604 scopus 로고    scopus 로고
    • Russian source
  • 54
    • 33746991405 scopus 로고    scopus 로고
    • Russian source
  • 55
    • 33746938463 scopus 로고    scopus 로고
    • Russian source
  • 56
    • 33746956296 scopus 로고    scopus 로고
    • Russian source
  • 57
    • 33747029398 scopus 로고    scopus 로고
    • Russian source
  • 58
    • 33746945631 scopus 로고    scopus 로고
    • Russian source
  • 59
    • 33746991404 scopus 로고    scopus 로고
    • Russian source
  • 60
    • 33746968777 scopus 로고    scopus 로고
    • Russian source
  • 62
    • 33747018915 scopus 로고    scopus 로고
    • Russian source
  • 63
    • 33747023174 scopus 로고    scopus 로고
    • Russian source
  • 64
    • 33747000471 scopus 로고    scopus 로고
    • Russian source
  • 65
    • 33746945126 scopus 로고    scopus 로고
    • Russian source
  • 66
    • 33747001923 scopus 로고    scopus 로고
    • Russian source
  • 67
    • 33746954761 scopus 로고    scopus 로고
    • Russian source
  • 68
    • 33747000125 scopus 로고    scopus 로고
    • Russian source
  • 69
    • 33746971084 scopus 로고    scopus 로고
    • Russian source
  • 70
    • 33746961821 scopus 로고    scopus 로고
    • Russian source
  • 71
    • 33746993267 scopus 로고    scopus 로고
    • Russian source
  • 72
    • 33746950585 scopus 로고    scopus 로고
    • Russian source
  • 73
    • 0032918722 scopus 로고    scopus 로고
    • A new version of the RDP (Ribosomal Database Project)
    • Maidak B.L., Cole J.R., Parker C.T. et al. A new version of the RDP (Ribosomal Database Project) // Nucleic Acids Res. 1999. V. 27. No 1. P. 171-173.
    • (1999) Nucleic Acids Res. , vol.27 , Issue.1 , pp. 171-173
    • Maidak, B.L.1    Cole, J.R.2    Parker, C.T.3
  • 74
    • 9144239005 scopus 로고    scopus 로고
    • Bacterial community analysis in polluted soils using molecular and metabolic techniques
    • August 5-8, Chicago
    • Watts J.EM., Wellington EM. Bacterial community analysis in polluted soils using molecular and metabolic techniques // Abstr. ASM Conference of Microb. Biodiversity. August 5-8,1999. Chicago. P. 42.
    • (1999) Abstr. ASM Conference of Microb. Biodiversity. , pp. 42
    • Watts, J.E.M.1    Wellington, E.M.2
  • 75
    • 9144258804 scopus 로고    scopus 로고
    • Changes in the bacterial community structure along the vertical oxygen gradient of flooded soil cores, as revealed by TRFLP analysis of 16S rRNA and their encoding genes
    • August 5-8, Chicago
    • Luedemann H., Henkel A., Arth J., Liesack W. Changes in the bacterial community structure along the vertical oxygen gradient of flooded soil cores, as revealed by TRFLP analysis of 16S rRNA and their encoding genes // Abstracts ASM Conference of Microbial Biodiversity. August 5-8, 1999, Chicago. P. 30.
    • (1999) Abstracts ASM Conference of Microbial Biodiversity , pp. 30
    • Luedemann, H.1    Henkel, A.2    Arth, J.3    Liesack, W.4
  • 76
    • 9144264566 scopus 로고    scopus 로고
    • RNA mediated PCR-clamping for selective recovery of novel phylogenetic groups from complex microbial consortia
    • August 5-8, Chicago.
    • Wintringerode F. von, Landt O., Gobel U.B. RNA mediated PCR-clamping for selective recovery of novel phylogenetic groups from complex microbial consortia // Abstr. ASM Conference of Microbial Biodiversity. August 5-8, 1999, Chicago. P.42.
    • (1999) Abstr. ASM Conference of Microbial Biodiversity. , pp. 42
    • Von Wintringerode, F.1    Landt, O.2    Gobel, U.B.3
  • 77
    • 9144256419 scopus 로고    scopus 로고
    • Evaluating the diversity of soil microbial communities using molecular techniques and establisched ecological indexes
    • August 5-8, Chicago.
    • Peacocki A.D., Machaughtoni et al. Evaluating the diversity of soil microbial communities using molecular techniques and establisched ecological indexes // Abstr. ASM Conference of Microbial. Biodiversity. August 5-8, 1999. Chicago. P. 15.
    • (1999) Abstr. ASM Conference of Microbial. Biodiversity. , pp. 15
    • Peacocki, A.D.1    Machaughtoni2
  • 78
    • 33746978844 scopus 로고    scopus 로고
    • Russian source
  • 79
    • 33746988193 scopus 로고
    • Ecol. Microbiol. Harwood Acad. Publ. GmbH. Part 2.
    • Zvyagintsev D.G. Microorganisms in Permafrost // Ecol. Microbiol. Harwood Acad. Publ. GmbH. 1995. Part 2. P. 1-37.
    • (1995) Microorganisms in Permafrost , pp. 1-37
    • Zvyagintsev, D.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.