Cis-acting sequences may contribute to size variation in the surface glycoprotein of bovine immunodeficiency virus

Journal of General Virology

Volumn 82, Issue 12, 2001, Pages 2989-2998

  Li, Y ^a   Carpenter, S ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CIS ACTING ELEMENT; URACIL; VIRUS ENVELOPE PROTEIN; VIRUS GLYCOPROTEIN; VIRUS RNA;

ARTICLE; BOVINE IMMUNODEFICIENCY LIKE VIRUS; CLONE; CONTROLLED STUDY; EQUINE INFECTIOUS ANEMIA VIRUS; GENE DUPLICATION; GENE INSERTION; GENETIC RECOMBINATION; GENETIC VARIABILITY; HUMAN IMMUNODEFICIENCY VIRUS 1; IN VIVO STUDY; LENTIVIRINAE; MUTATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RETROVIRUS; REVERSE TRANSCRIPTION; RNA RECOMBINATION; SEQUENCE ANALYSIS; VIROLOGY;

BOVINAE; BOVINE IMMUNODEFICIENCY VIRUS; BOVINE IMMUNODEFICIENCY-LIKE VIRUS; EQUIDAE; EQUINE INFECTIOUS ANEMIA VIRUS; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; LENTIVIRUS; RNA VIRUSES; UNIDENTIFIED RETROVIRUS;

EID: 0035192845     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-82-12-2989     Document Type: Article

References (56)

1. Cis elements and trans-acting factors required for minus strand DNA transfer during reverse transcription of the genomic RNA of murine leukemia virus
2. Correlated template-switching events during minus-strand DNA synthesis: A mechanism for high negative interference during retroviral recombination
3. HIV-1 reverse transcriptase specifically interacts with the anticodon domain of its cognate primer tRNA
4. Recombination and coronavirus defective interfering RNAs
5. Envelope sequence variation, neutralizing antibodies, and primate lentivirus persistence
6. Structure, replication, and recombination of retrovirus genomes: Some unifying hypotheses
7. Genetic diversity and evolution of retroviruses
8. Human immunodeficiency virus type 1 subtypes defined by env show high frequency of recombinant gag genes. The UN-AIDS network for HIV isolation and characterization
9. Nonhomogeneous distribution of human immunodeficiency virus type 1 proviruses in the spleen
10. Parameters that influence processive synthesis and site-specific termination by human immunodeficiency virus reverse transcriptase on RNA and DNA templates
11. Requirements for strand transfer between internal regions of heteropolymer templates by human immunodeficiency virus reverse transcriptase
12. The mechanism of human immunodeficiency virus reverse transcriptase-catalyzed strand transfer from internal regions of heteropolymeric RNA templates
13. Temporal relationship between elongation of the HIV type 1 glycoprotein 120 V2 domain and the conversion toward a syncytium-inducing phenotype
14. Length polymorphism within the second variable region of the human immunodeficiency virus type 1 envelope glycoprotein affects accessibility of the receptor binding site
15. A comprehensive panel of near-full-length clones and reference sequences for non-subtype B isolates of human immunodeficiency virus type 1
16. Relation of phenotype evolution of HIV-1 to envelope V2 configuration
17. Human immunodeficiency virus type 1 nucleocapsid protein promotes efficient strand transfer and specific viral DNA synthesis by inhibiting TAR-dependent self-priming from minus-strand strong-stop DNA
18. Genetic consequences of packaging two RNA genomes in one retroviral particle: Pseudodiploidy and high rate of genetic recombination
19. Retroviral recombination and reverse transcription
20. Evidence for a unique mechanism of strand transfer from the transactivation response region of HIV-1
21. Template-directed pausing of DNA synthesis by HIV-1 reverse transcriptase during polymerization of HIV-1 sequences in vitro
22. Interactions between HIV-1 nucleocapsid protein and viral DNA may have important functions in the viral life cycle
23. Possible roles of HIV-1 nucleocapsid in the specificity of proviral DNA synthesis and in its variability
24. Novel and dynamic evolution of equine infectious anemia virus genomic quasispecies associated with sequential disease cycles in an experimentally infected pony
25. Human immunodeficiency virus Type 1 nucleocapsid protein (NCp7) directs specific initiation of minus-strand DNA synthesis primed by human that flank the primer binding site
26. Recombination in the 5′ leader of murine leukemia virus is accurate and influenced by sequence identity with a strong bias toward the kissing-loop dimerization region
27. Homologous RNA recombination in brome mosaic virus: AU-rich sequences decrease the accuracy of crossovers
28. Engineering of homologous recombination hotspots with AU-rich sequences in brome mosaic virus
29. New insights into the mechanisms of RNA recombination
30. Misincorporation by HIV-1 reverse transcriptase promotes recombination via strand transfer synthesis
31. Functional characterization of the V1V2 region of human immunodeficiency virus type 1
32. 'Might as well jump!' template switching by retroviral reverse transcriptase, defective genome formation, and recombination
33. Mechanism of DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase
34. HIV genetic variation: Life at the edge
35. Small finger protein of avian and murine retroviruses has nucleic acid annealing activity and positions the replication primer tRNA onto genomic RNA
36. Recombination in HIV-1
37. Influence of human immunodeficiency virus nucleocapsid protein on synthesis and strand transfer by the reverse transcriptase in vitro
38. Changes in the extracellular envelope glycoprotein of variants that evolve during the course of simian immunodeficiency virus infection SIVMne affect neutralizing antibody recognition, syncytium formation, and tropism but not replication, cytopathicity, or CCR-5 coreceptor recognition
39. In vivo sequencing variability of human immunodeficiency virus type 1 envelope gp120: Association of V2 extension with slow disease progression
40. Homologous recombination of copackaged retrovirus RNAs during reverse transcription
41. Identification of hypervariable and conserved regions in the surface envelope gene in the bovine lentivirus
42. Size variation within the second hypervariable region of the surface envelope gene of the bovine lentivirus BIV in experimentally and naturally infected cattle
43. Reverse transcriptase and the generation of retroviral DNA
44. Cis-acting elements required for strong stop acceptor template selection during Moloney murine leukemia virus reverse transcription
45. RNA determinants of junction site selection in RNA virus recombinants and defective interfering RNAs
46. Retroviral recombination is nonrandom and sequence dependent
47. Strand transfer mediated by human immunodeficiency virus reverse transcriptase in vitro is promoted by pausing and results in misincorporation
48. Human immunodeficiency virus type 1 nucleocapsid protein reduces reverse transcriptase pausing at a secondary structure near the murine leukemia virus polypurine tract
49. Human immunodeficiency virus nucleocapsid protein accelerates strand transfer of the terminally redundant sequences involved in reverse transcription
50. 3′ junctions of oncogene-virus sequences and the mechanisms for formation of highly oncogenic retroviruses
51. Rate and mechanism of non-homologous recombination during a single cycle of retroviral replication
52. Retrovirus recombination depends on the length of sequence identity and is not error prone
53. Most retroviral recombinations occur during minus-strand DNA synthesis
54. Insertions, duplications and substitutions in restricted gp90 regions of equine infectious anaemia virus during febrile episodes in an experimentally infected horse
55. In vivo dynamics of equine infectious anemia viruses emerging during febrile episodes: Insertions/duplications at the principle neutralizing domain