Papio cynocephalus Endogenous retrovirus among Old World monkeys: Evidence for coevolution and ancient cross-species transmissions

Journal of Virology

Volumn 74, Issue 3, 2000, Pages 1578-1586

  Mang, Rui ^a,c   Maas, Jolanda ^a,b   Van Der Kuyl, Antoinette C ^a,b   Goudsmit, Jaap ^a,b  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

^b Amsterdam Institute of Viral Genomics   (Netherlands)

^c ACADEMIC MEDICAL CENTER   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; EVOLUTION; LONG TERMINAL REPEAT; MONKEY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIMATE; PRIORITY JOURNAL; RETROVIRUS; SPECIES DIFFERENTIATION; VIRUS TRANSMISSION;

ANIMALS; BASE SEQUENCE; ENDOGENOUS RETROVIRUSES; EVOLUTION, MOLECULAR; GENES, ENV; GENES, POL; HAPLORHINI; MOLECULAR SEQUENCE DATA; PAPIO; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; TERMINAL REPEAT SEQUENCES; UNTRANSLATED REGIONS;

EID: 0033971342     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.74.3.1578-1586.2000     Document Type: Article

References (23)

1. Boeke, J. D., and J. P. Stoye. 1997. Retrotransposons, endogenous retroviruses, and the evolution of retroelements, p. 343-435. In J. M. Coffin, S. H. Hughes, and H. E. Varmus (ed.), Retroviruses. Cold Spring Harbor Laboratory Press, Cold Spring Harbor Laboratory, N.Y.
2. Boom, R., C. J. A. Sol, M. M. M. Salimans, C. L. Jansen, P. M. E. Wertheimvan Dillen, and J. van der Noordaa. 1990. Rapid and simple method for purification of nucleic acids. J. Clin. Microbiol. 28:495-503.
3. Chen, Z., P. Telfier, A. Gettie, P. Reed, L. Zhang, D. D. Ho, and P. A. Marx. 1996. Genetic characterization of new West African simian immunodeficiency virus SIVsm: geographic clustering of household-derived SIV strains with human immunodeficiency virus type 2 subtypes and genetically diverse viruses from a single fetal sooty mangabey troop. J. Virol. 70:3617-3627.
4. Conroy, G. C. 1990. Primate evolution. W. W. Norton & Company, Inc., New York, N.Y.
5. Fa, J. E., and D. G. Lindburg. 1996. Evolution and ecology of macaque societies. Cambridge University Press, Cambridge, England.
6. Herniou, E., J. Martin, K. Miller, J. Cook, M. Wilkinson, and M. Tristem. 1998. Retroviral diversity and distribution in vertebrates. J. Virol. 72:5955-5966.
7. Kato, S., K. Matsuo, N. Nishimura, N. Takahashi, and T. Takano. 1987. The entire nucleotide sequence of baboon endogenous virus DNA: a chimeric genome structure of murine type C and simian type D retroviruses. Jpn. J. Genet. 62:127-137.
8. Kimura, M. A. 1980. A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
9. Kingdon, J. 1997. The Kingdon field guide to African mammals. Academic Press, San Diego, Calif.
10. Kumar, S., K. Tamura, and M. Nei. 1993. MEGA: molecular evolutionary genetics analysis, version 1.01. The Pennsylvania State University, University Park, Pa.
11. Lukashov, V. V., C. L. Kuiken, and J. Goudsmit. 1995. Intrahost human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period. J. Virol. 69:6911-6916.
12. Mang, R., J. Goudsmit, and A. C. van der Kuyl. 1999. Novel endogenous type C retrovirus in baboons: complete sequence, providing evidence for baboon endogenous virus gag-pol ancestry. J. Virol. 73:7021-7026.
13. Martin, R. D. 1993. Primate origins: plugging the gaps. Nature 363:223-234.
14. Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
15. Swofford, D. L. 1998. PAUP. Phylogenetic analysis using parsimony (and other methods), version 4. Sinauer Associates, Sunderland, Mass.
16. Vandamme, A. M., M. Salemi, and J. Desmyter. 1998. The simian origins of the pathogenic human T-cell lymphotropic virus type I. Trends Microbiol. 6:477-483.
17. van der Kuyl, A. C., J. T. Dekker, and J. Goudsmit. 1995. Distribution of baboon endogenous virus among species of African monkeys suggests multiple ancient cross-species transmissions in shared habitats. J. Virol. 69:7877-7887.
18. van der Kuyl, A. C., J. T. Dekker, and J. Goudsmit. 1995. Full-length proviruses of baboon endogenous virus (BaEV) and dispersed BaEV reverse transcriptase retroelements in the genome of baboon species. J. Virol. 69: 5917-5924.
19. van der Kuyl, A. C., J. T. Dekker, and J. Goudsmit. Primate genus Miopithecus: evidence for the existence of species and subspecies of dwarf guenons based on cellular and endogenous viral sequences. Mol. Phylogenet. Evol., in press.
20. van der Kuyl, A. C., C. L. Kuiken, J. T. Dekker, and J. Goudsmit. 1995. Phylogeny of African monkeys based upon mitochondrial 12S rRNA sequences. J Mol. Evol. 40:173-180.
21. van der Kuyl, A. C., R. Mang, J. T. Dekker, and J. Goudsmit. 1997. Complete nucleotide sequence of simian endogenous type D retrovirus with intact genome organization: evidence for ancestry to simian retrovirus and baboon endogenous virus. J. Virol. 71:3666-3676.
22. Zsiros, J., M. F. Jebbink, V. V. Lukashov, P. A. Voute, and B. Berthout. 1998. Evolutionary relationships within a subgroup of HERV-K-related human endogenous retroviruses. J. Gen. Virol. 79:61-70.
23. Zsiros, J., M. F. Jebbink, V. V. Lukashov, P. A. Voute, and B. Berkhout. 1999. Biased nucleotide composition of the genome of HERV-K related endogenous retroviruses and its evolutionary implications. J. Mol. Evol. 48: 102-111.