Sequence search algorithms for single pass sequence identification: Does one size fit all?

Comparative and Functional Genomics

Volumn 2, Issue 1, 2001, Pages 4-9

  Cara Woodwark, K ^a   Hubbard, Simon J ^a   Oliver, Stephen G ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

BLASTn; CDNA; EST; Sequence search algorithm; Single pass sequence; Yeast

Indexed keywords

AMINO ACID; COMPLEMENTARY DNA; FUNGAL DNA; FUNGAL PROTEIN; NUCLEOTIDE;

ACCURACY; ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; BIOTECHNOLOGY; COMPUTER PROGRAM; CONTROLLED STUDY; DATA BASE; EXPRESSED SEQUENCE TAG; FRAMESHIFT MUTATION; GENE SEQUENCE; GENOME; INFORMATION PROCESSING; INFORMATION SYSTEM; MOLECULAR BIOLOGY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; UNITED STATES; UNIVERSITY HOSPITAL;

EID: 0035084811     PISSN: 15316912     EISSN: None     Source Type: Journal    
DOI: 10.1002/cfg.61     Document Type: Article

References (15)

1. Basic local alignment search tool
2. Gapped BLAST and PSI-BLAST: A new generation of protein database search programmes
3. Chromosomal translocation in the genome evolution of yeast are independent of speciation
4. Life with 6000 genes
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6. Genetic basis for classification and identification of the ascomycetous yeasts
7. Improved tools for biological sequence comparison
8. Genomic reorganisation between two sibling yeast species, Saccharomyces bayanus and Saccharomyces cerevisiae
9. Updated map of duplicated regions in the yeast genome
10. Identification of common molecular subsequences
11. Molecular evidence for an ancient duplication of the entire yeast genome