The sulphated-galactan hydrolases, agarases and carrageenases: Structural biology and molecular evolution

Cahiers de Biologie Marine

Volumn 42, Issue 1-2, 2001, Pages 169-183

  Barbeyron, T ^a   Flament, D ^a   Michel, G ^a   Potin, P ^a   Kloareg, B ^a  

^a STATION BIOLOGIQUE   (France)

Author keywords

Agarase; Carrageenase; Cell wall; Glycoside hydrolases; Red algae; Sequence alignment

Indexed keywords

ALGAL CELL; CARRAGEENAN; CELL ULTRASTRUCTURE; CELL WALL; ENZYME CONFORMATION; ENZYME DEGRADATION; ENZYME SPECIFICITY; ESCHERICHIA COLI; GALACTAN; GENE OVEREXPRESSION; GLYCOSIDASE; SEQUENCE ANALYSIS;

ENZYME; RED ALGA;

EID: 0035055591     PISSN: 00079723     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (53)

1. A bifunctionalized fluorogenic tetrasaccharide as a substrate to study cellulases
2. Zobellia galactanovora gen. nov., sp. nov, a marine species of Flavobacteriacae isolated from a red alga, and classification of [Cytophaga] uliginosa (ZoBell & Upham, 1944) Reichenbach 1989 as Zobellia uliginosa gen. nov., comb. nov
3. L-Carrageenase of the marine bacterium Cytophaga drobachiensis
4. The kappa-carrageenase of the marine bacterium Cytophaga drobachiensis: Structural and phylogenetic relationships within family-16 glycoside hydrolases
5. The gene encoding the kappa-carrageenase of Alteromonas carrageenovora is related to β-1,3-1,4-glucanases
6. Analysis of kappa-iota hybrid carrageenans with kappa-carrageenase, iota-carrageenase and 13C-NMR
7. The agarase gene dag A of Streptomyces coelicolor A32: Nucleotide sequence and transcriptionnal analysis
8. Deciphering protein sequence information through hydrophobic cluster analysis (HCA): Current status and perspectives
9. Antiherpetic and anticoagulant properties of carrageenans from the red seaweed Gigartina skottsbergii and their cyclized derivatives: Correlation between structure and biological activity
10. Structures and mechanisms of glycosyl hydrolases
11. Carrageenan biotechnology: An industrial perspective
12. Biological properties of carrageenan
13. Identification of tandemly repeated type VI cellulose-binding domains in an endoglucanase from the aerobic soil bacterium Cellvibrio mixtus
14. Purification and properties of L-carrageenase from a marine bacteria
15. Updating the sequence-based classification of glycosyl hydrolases
16. Cellulase families revealed by Hydrophobic Cluster Analysis
17. Carrageenans inhibit growth-factor binding
18. Identification of glutamic acid 105 at the active site of Bacillus amyloliquefaciens 1,3-1,4-β-D-glucan 4-glucanohydrolase using epoxide-based inhibitors
19. Molecular biology of fibronectin
20. Identification of active site carboxylic residues in Bacillus licheniformis 1,3-1,4-β-D-glucan-4-glucanohydrolase by site directed mutagenesis
21. Structure of the cell walls of marine algae and ecophysiological functions of the matrix polysaccharides
22. The laminarinase from thermophilic eubacterium Rhodothermus marinus. Conformation, stability, and identification of active site carboxylic residues by site directed mutagenesis
23. The structure of human thrombospondin, an adhesive glycoprotein with multiple calcium-binding sites and homologies with several different proteins
24. Hydophobic cluster analysis: Procedures to derive structural and functional information from 2D-representation of protein sequences
25. Solvent content of protein crystals
26. Kappa-carrageenase from Pseudomonas carrageenovora
27. Enzymes from Pseudomonas carrageenovora. Application to studies of carrageenan structure
28. Expression, purification, crystallisation and preliminary X-ray analysis of the κ-carrageenase from Pseudoalteromonas carrageenovora
29. Expression, purification, crystallisation and preliminary X-ray analysis of the L-carrageenase from Alteromonas fortis
30. The κ-carrageenase from Pseudoalteromonas carrageenovora features a tunnel-shaped active site: A novel insight in the evolution of clan -B glycoside hydrolases
31. β-agarases I and II from Pseudomonas atlantica. Purification and some properties
32. β-agarases I and II from Pseudomonas atlantica. Substrate specificities
33. Free and silica-bound oligo kappa-carrageenan elicit laminarinase activity in Rubus cells and protoplasts
34. Essential catalytic role of Glu134 in endo-β-1,3-1,4-D-glucan 4-glucanohydrolase from B. licheniformis as determined by site directed mutagenesis
35. Processing and hydrolytic mechanism of the cgkA-encoded κ-carrageenase of Alteromonas carrageenovora
36. Purification and characterization of the α-agarase from Alteromonas agarlyticus Cataldi comb. nov., strain GJIB
37. Purification and characterization of a new κ-carrageenase from a marine Cytophaga-like bacterium
38. Structure, conformation and mechanism in the formation of polysaccharide gels and networks
39. NMR spectroscopic investigation of agarose oligomers produced by an alpha-agarase
40. Spectroscopic characterization and conformation of oligo kappa carrageenan
41. Sequence analysis of the agaB gene encoding a new beta-agarase from Vibrio sp. strain JT0107
42. Cloning and sequencing of agaA, a unique agarase 0107 gene from a marine bacterium. Vibrio sp. strain JT0107
43. Cellulose hydrolysis by bacteria and fungi
44. The enzymic hydrolysis of carrageenan by Pseudomonas carrageenovora: Purification of a κ-carrageenase
45. Preparation and anti-HIV activity of low-molecular-weight carrageenans and their sulfated derivatives
46. A single amino acid determinant of the membrane localization of lipoproteins in E. coli
47. The enzymic hydrolysis of carrageenin
48. Macrophage stimulation activity of the polysaccharide fraction from a marine alga (Porphyra yezoensis): Structure-function relationships and improved solubility
49. Enzymic cleavage of the α-linkages in agarose to yield agarooligosaccharides
50. Crystallographic evidence for substrate ring distortion and protein conformational changes during catalysis in cellobiohydrolase Cel6A from Trichoderma reesei
51. Analysis and prediction of the location of catalytic residues in enzymes