Identification of tandemly repeated type VI cellulose-binding domains in an endoglucanase from the aerobic soil bacterium Cellvibrio mixtus

Applied Microbiology and Biotechnology

Volumn 49, Issue 5, 1998, Pages 552-559

  Fontes, C M G A ^a   Clarke, J H ^b   Hazlewood, G P ^b   Fernandes, T H ^a   Gilbert, H J ^c   Ferreira, L M A ^a  

^a FACULDADE DE MEDICINA VETERINÁRIA   (Portugal)

^b BABRAHAM INSTITUTE   (United Kingdom)

^c NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CELLULASE; CELLULOSE; GLUCAN SYNTHASE; GLYCOSIDASE;

AEROBIC BACTERIUM; AMINO TERMINAL SEQUENCE; ARTICLE; CELL WALL; CELLVIBRIO; ENZYME ANALYSIS; ENZYME ASSAY; ENZYME SPECIFICITY; HYDROLYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; SEQUENCE ANALYSIS; SOIL MICROFLORA; TANDEM REPEAT;

AMINO ACID SEQUENCE; BASE SEQUENCE; BINDING SITES; CELLULASE; CELLULOSE; GRAM-NEGATIVE AEROBIC RODS AND COCCI; MOLECULAR SEQUENCE DATA; SOIL MICROBIOLOGY; STRUCTURE-ACTIVITY RELATIONSHIP;

EID: 0031832318     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002530051212     Document Type: Article

References (31)

1. Béguin P, Aubert JP (1994) The biological degradation of cellulose. FEMS Microbiol Rev 13: 25-58
2. Berns KI, Thomas CA (1965) Isolation of high molecular weight DNA from Hemophilus influenzae. J Mol Biol 11: 476-490
3. Black GW, Rixon JE, Clarke JH, Hazlewood GP, Theodorou MK, Morris P, Gilbert HJ (1996) Evidence that linker sequences and cellulose-binding domains enhance the activity of hemicellulases against complex substrates. Biochem J 319: 515-520
4. Birnboim HC, Doly J (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7: 1513-1518
5. Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162: 156-159
6. Clarke JH, Laurie JI, Gilbert HJ, Hazlewood GP (1991) Multiple xylanases of Cellulomonas funi are encoded by distinct genes. FEMS Microbiol Lett 83: 305-310
7. Din N, Gilkes NR, Tekant B, Miller RC, Warren RAJ, Kilburn DG (1992) Non-hydrolytic disruption of cellulose fibres by the binding domain of a bacterial cellulase. Biotechnology 9: 1096-1099
8. Ferreira LMA, Durrant AJ, Hall J, Hazlewood GP, Gilbert HJ (1990) Spatial separation of protein domains is not essential for catalytic activity or substrate binding in a xylanase. Biochem J 269: 261-264
9. Fontes CMGA, Clarke JH, Hazlewood GP, Fernandes TH, Gilbert HJ, Ferreira LMA (1997) Possible roles for a non-modular, thermostable and proteinase-resistant cellulase from the mesophilic aerobic soil bacterium Cellvibrio mixtus. Appl Microbiol Biotechnol 48: 473-479
10. Gilbert HJ, Hazlewood GP (1993) Bacterial cellulases and xylanases. J Gen Microbiol 139: 187-194
11. Gilbert HJ, Hazlewood GP, Laurie JI, Orpin CG, Xue GP (1992) Homologous catalytic domains in rumen fungal xylanase: evidence for gene duplication and bacterial origin. Mol Microbiol 6: 2065-2072
12. Gosalbes MJ, Perez-Gonzalez JA, Gonzalez R, Navarro A (1991) Two beta-glycanase genes are clustered in Bacillus polymyxa: molecular cloning, expression, and sequence analysis of genes encoding a xylanase and an endo-beta-(1,3)-(1,4)-glucanase. J Bacteriol 173: 7705-7710
13. Grépinet O, Chebrou MC, Béguin P (1988) Nuceotide sequence and deletion analysis of the xylanase gene (xynZ) of Clostridium thermocellum. J Bacteriol 170: 4582-4588
14. Guiseppi A, Cami B, Aymeric JL, Ball G, Creuzet N (1988) Homology between endoglucanase Z of Erwinia chrysanthemi and endoglucanases of Bacillus subtilis and alkalophilic Bacillus. Mol Microbiol 2: 159-164
15. Hall J, Black GW, Ferreira LMA, Millward-Sadler SJ, Ali BRS, Hazlewood GP, Gilbert HJ (1995) The non-catalytic cellulose-binding domain of a novel cellulase from Pseudomonas fluorescens subsp. cellulosa is important for the efficient hydrolysis of Avicel. Biochem J 309: 749-756
16. Henrissat B, Bairoch A (1993) New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J 280: 309-316
17. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685
18. Miller GL (1959) The use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem 31: 426-428
19. Millward-Sadler SJ, Davidson K, Hazlewood GP, Black GW, Gilbert HJ, Clarke JH (1995) Novel cellulose-binding domains. NodB homologues and conserved modular architecture in xylanases from the aerobic soil bacteria Pseudomonas fluorescens subp. cellulosa and Cellvibrio mixtus. Biochem J 312: 39-48
20. Millward-Sadler SJ, Hall J, Black GW, Hazlewood GP, Gilbert HJ (1996) Evidence that the Piromyces gene family encoding endo-1,4-mannanases arose through gene duplication. FEMS Microbiol Lett 141: 183-188
21. Norrander J, Kemp T, Messing J (1983) Construction of improved M13 vectors using oligonucleotide-directed mutagenesis. Gene 26: 101-106
22. Perlman D, Halvorson HO (1983) A putative signal peptidase recognition site and sequence in eukaryotic and prokaryotic signal peptides. J Mol Biol 167: 391-409
23. Sakka K, Kojima Y, Kondo T, Kurita S, Ohmiya K, Shimada (1993) Nucleotide sequence of the Clostridium stercorarium xynA encoding xylanase A: identification of catalytic and cellulose binding domains. Biosci Biotechnol Biochem 57: 273-277
24. Sakka K, Takada G, Karita S, Ohmiya K (1996) Identification and characterisation of cellulose-binding domains in xylanase A of Clostridium stercorarium. Ann N Y Acad Sci 782: 241-251
25. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
26. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sciences USA 74: 5463-5467
27. Seki N, Muta T, Oda T, Iwaki D, Kuma K, Miyata T, Iwanaga S (1994) Horseshoe crab (1,3)-beta-D-glucan-sensitive coagulation factor G. A serine protease zymogen heterodimer with similarities to beta-glucan-binding. J Biol Chem 269: 1370-1374
28. Teather RM, Wood PJ (1982) Use of Congo-Red polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from bovine rumen. Appl Environ Microbiol 43: 777-782
29. Tomme P, Warren RA, Gilkes NR (1995) Cellulose hydrolysis bybacteria and fungi. Adv Microbiol Physiol 37: 1-81
30. Wynne EC, Pemberton JM (1986) Cloning of a gene cluster from Cellvibrio mixtus which codes for cellulase, chitinase, amylase and pectinase. Appl Environ Microbiol 52: 1362-1367
31. Zappe H, Jones WA, Jones DT. Woods DR (1988) Structure of an endo-beta-1,4-glucanase gene from Clostridium acetobutylicum P262 showing homology with endoglucanase genes from Bacillus spp. Appl Environ Microbiol 54: 1289-1292