Bacterial populations and processes involved in acetate and propionate consumption in anoxic brackish sediment

FEMS Microbiology Ecology

Volumn 35, Issue 1, 2001, Pages 97-103

  Boschker, H T S ^a   De Graaf, W ^a   Koster M ^b   Meyer Reil, L A ^b   Cappenberg, T E ^a  

^a NETHERLANDS INSTITUTE OF ECOLOGY NIOO KNAW   (Netherlands)

^b UNIVERSITY OF GREIFSWALD   (Germany)

Author keywords

13C labeling; Acetate; Phospholipid derived fatty acid; Propionate; Sediment; Sulfate reducing bacteria

Indexed keywords

ACETIC ACID; PROPIONIC ACID;

ANOXIA; ARTICLE; BACTERIAL GROWTH; BIODEGRADATION; NONHUMAN; PRIORITY JOURNAL; SEA; SEDIMENT; SULFATE REDUCING BACTERIUM;

BACTERIA (MICROORGANISMS); DESULFOFRIGUS; DESULFOTOMACULUM ACETOXIDANS;

EID: 0035024004     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(00)00116-1     Document Type: Article

References (45)

1. 13C-labelling of biomarkers Nature 392 1998 801 805
2. O. Pelz M. Tesar W.M. Wittich E.R.B. More K.N. Timmis W.R. Abraham Towards elucidation of microbial community metabolic pathways: unravelling the network of carbon sharing in a pollutant-degrading bacterial consortium by immunocapture and isotopic ratio mass spectrometry Environ. Microbiol. 1 1999 167 174
3. M.T. Cottrell D.L. Kirchman Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter Appl. Environ. Microbiol. 66 2000 1692 1697
4. D.G. Capone R.P. Kiene Comparison of microbial dynamics in marine and freshwater sediments: contrasts in anaerobic carbon metabolism Limnol. Oceanogr. 33 1988 725 749
5. R.J. Parkes G.R. Gibson I. Mueller-Harvey W.J. Buckingham R.A. Herbert Determination of the substrates for sulphate-reducing bacteria within marine and estuarine sediments with different rates of sulphate reduction J. Gen. Microbiol. 135 1989 175 187
6. J. Sørensen D. Christensen B.B. Jørgensen Volatile fatty acids and hydrogen as substrates for sulfate-reducing bacteria in anaerobic marine sediment Appl. Environ. Microbiol. 42 1981 5 11
7. Hansen, T.A. (1993) Carbon metabolism of sulfate-reducing bacteria. In: The Sulfate-reducing Bacteria: Contemporary Perspectives (Odom, J.M. and Singleton, R., Jr., Eds.), pp. 21–40. Springer, New York.
8. Widdel, F. and Hansen, T.A. (1992) The dissimilatory sulfate- and sulfur-reducing bacteria. In: The Prokaryotes (Balows, A., Trüper, H.G., Dworkin, M., Harder, W. and Schleifer, K.H., Eds.), pp. 583–624. Springer, New York.
9. B. Schink Energetics of syntrophic cooperation in methanogenic degradation Microbiol. Mol. Biol. Rev. 61 1997 262 280
10. Oude Elferink, S.J.W.H. (1998) Sulfate-reducing Bacteria in Anaerobic Reactors. Ph.D. thesis, Wageningen Agricultural University.
11. 13C-methane incorporation into methanotroph membrane lipids in a freshwater sediment FEMS Microbiol. Ecol. 29 1999 81 89
12. I.D. Bull N.R. Parekh G.H. Hall P. Ineson R.P. Evershed Detection and classification of atmospheric methane oxidizing bacteria in soil Nature 405 2000 175 178
13. R. Pel R. Oldenhuis W. Brand A. Vos J.C. Gottschal K.B. Zwart Stable-isotope analysis of a combined nitrification-denitrification sustained by thermophilic methanotrophs under low-oxygen conditions Appl. Environ. Microbiol. 63 1997 474 481
14. M. Köster S. Dahlke L.A. Meyer-Reil Microbiological studies along a gradient of eutrophication in a shallow coastal inlet in the southern Baltic Sea (Nordrügensche Bodden) Mar. Ecol. Prog. Ser. 152 1997 27 39
15. W. de Graaf P. Wellsbury R.J. Parkes T.E. Cappenberg Comparison of acetate turnover in methanogenic and sulfate-reducing sediments by radiolabeling and stable isotope labeling and the use of specific inhibitors: evidence for isotopic exchange Appl. Environ. Microbiol. 62 1996 772 777
16. C.A. Hordijk I. Burgers G.J.M. Phylipsen T.E. Cappenberg Trace determination of lower volatile fatty acids in sediments by gas chromatography with chemically bonded FFAP columns J. Chromatogr. 511 1990 317 323
17. C.A. Hordijk H. Kamminga T.E. Cappenberg Kinetic studies of acetate in freshwater sediments: use of stable isotope tracers Geochim. Cosmochim. Acta 58 1994 683 694
18. R.H. Findlay G.M. King L. Watling Efficacy of phospholipid analysis in determining microbial biomass in sediments Appl. Environ. Microbiol. 55 1989 2888 2893
19. J.B. Guckert C.P. Antworth P.D. Nichols D.C. White Phospholipid ester-linked fatty acid profiles as reproducible assays for changes in prokaryotic community structure of estuarine sediments FEMS Microbiol. Ecol. 31 1985 147 158
20. G. Rieley Derivatisation of organic compounds prior to gas chromatographic-combustion-isotope ratio mass spectrometric analysis: identification of isotope fractionation processes Analyst 119 1994 915 919
21. F.J. Sansone C.S. Martens Volatile fatty acid cycling in organic-rich sediments Geochim. Cosmochim. Acta 46 1982 1575 1589
22. N.I. Krylova P.H. Janssen R. Conrad Turnover of propionate in methanogenic paddy soils FEMS Microbiol. Ecol. 23 1997 107 117
23. D.R. Lovley M.J. Klug Intermediary metabolism of organic matter in the sediments of a eutrophic lake Appl. Environ. Microbiol. 43 1982 552 560
24. T. Nozoe Effects of methanogenesis and sulfate-reduction on acetogenetic oxidation of propionate and further decomposition of acetate in paddy soil Soil Sci. Plant Nutr. 43 1997 1 10
25. J. Taylor R.J. Parkes The cellular fatty acids of the sulphate-reducing bacteria, Desulfobacter sp., Desulfobulbus sp. and Desulfovibrio desulfuricans J. Gen. Microbiol. 129 1983 3303 3309
26. S.J.W.H. Oude Elferink H.T.S. Boschker A.J.M. Stams Identification of sulfate reducers and Syntrophobacter sp. in anaerobic granular sludge by fatty-acid biomarkers and 16S rRNA probing Geomicrobiol. J. 15 1998 3 17
27. N.J.E. Dowling F. Widdel D.C. White Phospholipid ester-linked fatty acids biomarkers of acetate-oxidizing sulphate-reducers and other sulphide-forming bacteria J. Gen. Microbiol. 132 1986 1815 1825
28. M. Vainshtein H. Hippe R.M. Kroppenstedt Cellular fatty acid composition of Desulfovibrio species and its use in classification of sulfate-reducing bacteria Syst. Appl. Microbiol. 15 1992 554 566
29. L.L. Kohring D.B. Ringelberg R. Devereux D.A. Stahl M.W. Mittelman D.C. White Comparison of phylogenetic relationships based on phospholipid fatty acid profiles and ribosomal RNA sequence similarities among dissimilatory sulfate-reducing bacteria FEMS Microbiol. Lett. 119 1994 303 308
30. C. Knoblauch K. Sahm B.B. Jorgensen Psychrophilic sulfate-reducing bacteria isolated from permanently cold Arctic marine sediments: description of Desulfofrigrus oceanense gen. nov., sp nov., Desulfofrigus fragile sp nov., Desulfofaba gelida gen. nov., sp nov., Desulfotalea psychrophila gen. nov., sp nov and Desulfotalea arctica sp nov. Int. J. Syst. Bacteriol. 49 1999 1631 1643
31. R. Devereux G.W. Mundfrom A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment Appl. Environ. Microbiol. 60 1994 3437 3439
32. J.N. Rooney-Varga R. Devereux R.S. Evans M.E. Hines Seasonal changes in the relative abundance of uncultivated sulfate-reducing bacteria in a salt marsh sediment and in the rhizosphere of Spartina alterniflora Appl. Environ. Microbiol. 63 1997 3895 3901
33. K. Ravenschlag K. Sahm J. Pernthaler R. Amann High bacterial diversity in permanently cold marine sediments Appl. Environ. Microbiol. 65 1999 3982 3989
34. A. Cifuentes J. Antón S. Benlloch A. Donnelly R.A. Herbert F. Rodrı́guez-Valera Prokaryotic diversity in Zostera noltii -colonized marine sediments Appl. Environ. Microbiol. 66 2000 1715 1719
35. J.L. Tholozan E. Samain J.P. Grivet G. Albagnac Propionate metabolism in a methanogenic enrichment culture. Direct reductive carboxylation and acetogenisis pathways FEMS Microbiol. Ecol. 73 1990 291 298
36. F. Widdel N. Pfennig A new anaerobic, sporing, acetate-oxidizing, sulfate-reducing bacterium, Desulfotomaculum (emend.) acetoxidans Arch. Microbiol. 112 1977 119 122
37. H.J. Laanbroek N. Pfennig Oxidation of short-chain fatty acids by sulfate-reducing bacteria in freshwater and in marine sediments Arch. Microbiol. 128 1981 330 335
38. F. Widdel N. Pfennig Studies on dissimilatory sulfate-reducing bacteria enriched with acetate from saline environments. Description of Desulfobacter postgatei gen. nov., sp. nov. Arch. Microbiol. 129 1981 395 400
39. F. Widdel New types of acetate-oxidizing, sulfate-reducing Desulfobacter species, D. hydrogenophilus sp. nov., D. latus sp. nov., and D. curvatus sp. nov. Arch. Microbiol. 148 1987 286 291
40. R.J. Parkes N.J.E. Dowling D.C. White R.A. Herbert G.R. Gibson Characterization of sulphate-reducing bacterial populations within marine and estuarine sediments with different rates of sulphate reduction FEMS Microbiol. Ecol. 12 1993 235 250
41. J.P. Gray R.P. Herwig Phylogenetic analysis of the bacterial communities in marine sediments Appl. Environ. Microbiol. 62 1996 4049 4059
42. E. Llobet-Brossa R. Rosselló-Mora R. Amann Microbial community composition of Wadden sea sediments as revealed by fluorescence in situ hybridization Appl. Environ. Microbiol. 64 1998 2691 2696
43. K. Sahm B.J. MacGregor B.B. Jorgensen D.A. Stahl Sulphate reduction and vertical distribution of sulphate-reducing bacteria quantified by rRNA slot-blot hybridization in a coastal marine sediment Environ. Microbiol. 1 1999 65 74
44. P. Roslev P.L. Madsen J.B. Thyme K. Henriksen Degradation of phthalate and di-(2-ethylhexyl)phthalate by indigenous and inoculated microorganisms in sludge-amended soil Appl. Environ. Microbiol. 64 1998 4711 4719
45. C.C. Ouverney J.A. Fuhrman Combined microautoradiography-16S rRNA probe technique for determination of radioisotope uptake by specific microbial cell types in situ Appl. Environ. Microbiol. 65 1999 1746 1752