Microsatellite variation in natural Drosophila melanogaster populations from New South Wales (Australia) and Tasmania

Molecular Ecology

Volumn 10, Issue 5, 2001, Pages 1197-1205

  Agis, M ^a   Schlotterer C ^a  

^a UNIVERSITY OF VETERINARY MEDICINE   (Austria)

Author keywords

Clines; Colonization; FST; Gene flow; Microsatellites; Population differentiation

Indexed keywords

AUSTRALIA; COASTAL ENVIRONMENT; GENE FLOW; GENETIC DIFFERENCE; GENETIC VARIABILITY; GEOGRAPHIC ORIGIN; GEOGRAPHICAL VARIATION; ISRAEL; LIFE HISTORY TRAIT; MICROSATELLITE DNA; MOLECULAR ECOLOGY; POPULATION STRUCTURE;

ANIMALS; DROSOPHILA MELANOGASTER; GENETICS, POPULATION; MICROSATELLITE REPEATS; NEW SOUTH WALES; TASMANIA;

DROSOPHILA MELANOGASTER; MELANOGASTER;

EID: 0034996566     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2001.01271.x     Document Type: Article

References (41)

1. Aguadé M (1999) Positive selection drives the evolution of the Acp29AB accessory gland protein in Drosophila. Genetics, 152, 543-551.
2. Alonso-Blanco I, Koornneef I (2000) Naturally occurring variation in Arabidopsis: an underexploited resource for plant genetics. Trends in Plant Science, 5, 22-29.
3. Anderson PR, Knibb WR, Oakeshott JG (1987) Observations on the extent and temporal stability of latitudinal clines for alcohol dehydrogenase allozymes and four chromosome inversions in Drosophila melanogaster. Genetica, 75, 81-88.
4. Beaumont MA (1999) Detecting population expansion and decline using microsatellites. Genetics, 153, 2013-2029.
5. Begun D, Aquadro CF (1993) African and North American populations of Drosophila melanogaster are very different at the DNA level. Nature, 365, 548-550.
6. Begun DJ, Aquadro CF (1995) Molecular variation at the vermilion locus in geographically diverse populations of Drosophila melanogaster and D. simulans. Genetics, 140, 1019-1032.
7. Berry A, Kreitman M (1993) Molecular analysis of an allozyme cline: alcohol dehydrogenase in Drosophila melanogster on the east coast of North America. Genetics, 134, 869-893.
8. Boussy IA, Itoh M, Rand D, Woodruff RC (1998) Origin and decay of the P element-associated latitudinal cline in Australian Drosophila melanogaster. Genetica, 104, 45-57.
9. Boussy IA, Kidwell MG (1987) The P-M hybrid dysgenesis cline in eastern Australian Drosophila melanogaster. discrete P, Q and M regions are nearly contiguous. Genetics, 115, 737-745.
10. Chakraborty R, Nei M (1977) Bottleneck effects on average heterozygosity and genetic distances with the stepwise mutation model. Evolution, 31, 347-356.
11. Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144, 2001-2014.
12. Coyne JA, Boussy IA, Prout T et al. (1982) Long-distance migration of Drosophila. American Naturalist, 119, 589-595.
13. David JR, Capy P (1988) Genetic variation of Drosophila melanogaster natural populations. Trends in Genetics, 4, 106-111.
14. Endler JA (1977) Geographic variation, speciation and clines. In: Monographs in population biology (ed. May RM), Princeton University Press, Princeton.
15. Felsenstein J (1991) PHYLIP, version 3.57c. University of Washington, Seattle.
16. Gilchrist AS, Partridge L (1999) A comparison of the genetic basis of wing size divergence in three parallel body size clines of Drosophila melanogaster. Genetics, 153, 1775-1787.
17. Goldstein D, Schlötterer C (1999) Microsatellites: Evolution and Applications. Oxford University Press, Oxford.
18. Goudet J (1995) FSTAT version 1.2: a computer program to calculate F-statistics. Journal of Heredity, 86, 485-486.
19. Goudet J, Raymond M, de Meeüs T, Rousset F (1996) Testing differentiation in diploid populations. Genetics, 144, 1933-1940.
20. Harr B, Schlötterer C (2000) Long microsatellite alleles in Drosophila melanogaster have a downward mutation bias and short persistence times, which cause their genome-wide underrepresentation. Genetics, 155, 1213-1220.
21. Harr B, Weiss S, David JR, Brem G, Schlötterer C (1998) A microsatellite-based multilocus phylogeny of the Drosophila melanogaster species complex. Current Biology, 8, 1183-1186.
22. James AC, Azevedo RB, Partridge L (1997) Genetic and environmental responses to temperature of Drosophila melanogaster from a latitudinal cline. Genetics, 146, 881-890.
23. Kimmel M, Chakraborty R, King JP et al. (1998) Signatures of population expansion in microsatellite repeat data. Genetics, 148, 1921-1930.
24. McColl G, McKechnie SW (1999) The Drosophila heat shock hsr-omega gene: an allele frequency cline detected by quantitative PCR. Molecular Biology and Evolution, 16, 1568-1574.
25. Miller SA, Dykes DD, Polesky HF (1988) A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Research, 16, 1215.
26. Minch E, Ruiz-Linares A, Goldstein D, Feldman M, Cavalli-Sforza LL (1995) MICROSAT (Version 1.4d): a Computer Program for Calculating Various Statistics on Microsatellite Allele Data, http:// lotka.stanford.edu/microsat/microsat.html.
27. Nei M, Roychoudhury AK (1974) Sampling variances of heterozygosity and genetic distance. Genetics, 76, 379-390.
28. Oakeshott JG, Gibson JB, Anderson PR et al. (1982) Alcohol dehydrogenase and glycerol-3-phosphate dehydrogenase clines in Drosophila melanogaster of different continents. Evolution, 36, 86-96.
29. Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences, 12, 357-358.
30. Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
31. Reich DE, Feldman MW, Goldstein DB (1999) Statistical properties of two tests that use multilocus data sets to detect population expansions. Molecular Biology and Evolution, 16, 453-466.
32. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219-1228.
33. Schlötterer C (1998) Microsatellites. In: Molecular Genetic Analysis of Populations: a Practical Approach, 2nd edn. (ed. Hoelzel AR), pp. 237-261. Oxford University Press, Oxford.
34. Schlötterer C (2000) Evolutionary dynamics of microsatellite DNA. Chromosoma, 109, 365-371.
35. Schlötterer C, Vogl C, Tautz D (1997) Polymorphism and locus-specific effects on polymorphism at microsatellite loci in natural Drosophila melanogaster populations. Genetics, 146, 309-320.
36. Schlötterer C, Zangerl B (1999) The use of imperfect microsatellites for DNA fingerprinting and population genetics. In: DMA Profiling and DNA Fingerprinting (eds Epplen JT, Lubjuhn T), pp. 153-165. Birkhäuser, Basel.
37. Singh RS, Hickey DA, David J (1982) Genetic differentiation between geographically distant populations of Drosophila melanogaster. Genetics, 101, 235-256.
38. Singh RS, Rhomberg LR (1987) A comprehensive study of genetic variation in natural populations of Drosophila melanogaster. I. Estimates of gene flow from rare alleles. Genetics, 115, 313-322.
39. Slatkin M (1993) Isolation by distance in equilibrium and non-equilibrium populations. Evolution, 47, 264-279.
40. Sokal RR, Rohlf FJ (1995) Biometry. W.H. Freeman and Company, New York.
41. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.