Sampling DNA from the rhizosphere of Brassica napus to investigate rhizobacterial community structure

Plant and Soil

Volumn 233, Issue 2, 2001, Pages 223-230

  Macrae, Andrew ^a   Lucon, Cleusa M M ^b   Rimmer, David L ^c   O'donnell, Anthony G ^c  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^b INSTITUTO BIOLÓGICO   (Brazil)

^c NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

16S rDNA; Actinomycetes; Bacilli; Ecology; Rhizosphere

Indexed keywords

BACTERIAL COMMUNITY; COMMUNITY STRUCTURE; DNA ANALYSIS; FUNGAL DNA; PLANT DNA; PLANT ROOT; POLYMERASE CHAIN REACTION; RHIZOSPHERE; SAMPLING;

COMMUNITY STRUCTURE; DNA; GENETIC ANALYSIS; RHIZOBACTERIUM; SOIL MICROORGANISM;

EID: 0034913918     PISSN: 0032079X     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1010397304969     Document Type: Article

References (34)

1. Basic local alignment search tool
2. Populations dynamics and rhizosphere interactions
3. Molecular microbial diversity in soils from Eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
4. Molecular microbial diversity of an agricultural soil in Wisconsin
5. Complete nucleotide sequence of a 16S ribosomal gene from Escherichia coli
6. Anatomy and community structure of the rhizosphere
7. Models of the rhizosphere
8. Analysis of the dynamics of bacterial communities in the rhizosphere of the chrysanthemum via denaturing gradient gel electrophoresis and substrate utilisation patterns
9. The linear PCR reaction: A simple and robust method for sequencing amplified rRNA genes
10. Confidence limits on phylogenies, an approach using the bootstrap
11. Reviewing the DA001-files: A 16S rRNA chase on suspect #X99967, a Bacillus and Dutch underground activist
12. Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils
13. A method to study rhizosphere processes in thin soil layers of different proximity to roots
14. Inferring phylogenies from sequences of unequal base composition
15. Microbial evolution, diversity and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms
16. Soil microorganisms and the rhizosphere
17. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses
18. The use of 16S rDNA methods in soil microbial ecology
19. Novel bacterial diversity recovered from the rhizosphere of oilseed rape (Brassica napus) determined by the analysis of 16S ribosomal DNA
20. A new version of the RDP (Ribosomal Database Project)
21. Phylogenetic diversity of bacterial communities differing in degree of proximity of Lolium perenne and Trifolium repens roots
22. Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures
23. Localised sequence regions possessing high melting temperatures prevent the amplification of a DNA mimic in competitive PCR
24. Molecular evidence for the presence of novel actinomycete lineages in a temperate forest soil
25. Incubation time and media requirements of culturable bacteria from different phylogenetic groups
26. Characterisation of the dominant and rare members of a young hawaiian soil with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition
27. Bias in template-to-product ratios in multitemplate PCR
28. The neighbour joining method: A new method for constructing phylogenetic trees
29. Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis
30. Recovery of DNA from soils and sediments
31. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
32. TREECON: A software package for the construction and drawing of evolutionary trees
33. Surveys of gene families using polymerase chain reaction: PCR selection and PCR drift
34. The Bacillus subtilis genome sequence: The molecular blueprint of a soil bacterium