Prediction of protein functional domains from sequences using artificial neural networks

Genome Research

Volumn 11, Issue 8, 2001, Pages 1410-1417

  Murvai, János ^a   Vlahoviček, Kristian ^a   Szepesvári, Csaba ^b   Pongor, Sándor ^a  

^a INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Italy)

^b Mindmaker Ltd   (Hungary)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ARTIFICIAL NEURAL NETWORK; COMPARATIVE STUDY; CONTROLLED STUDY; DATA BASE; GENE FUNCTION; GENE SEQUENCE; GENE TRANSFER; MOLECULAR RECOGNITION; PREDICTION; PRIORITY JOURNAL; PROTEIN DOMAIN; SCORING SYSTEM;

COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; NEURAL NETWORKS (COMPUTER); PROTEIN STRUCTURE, TERTIARY; SEQUENCE ANALYSIS, PROTEIN;

EID: 0034887296     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.168701     Document Type: Article

References (29)

1. Basic local alignment search tool
2. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
3. An efficient implementation of BP on RISC-based workstations
4. InterPro - An integrated documentation resource for protein families, domains and functional sites
5. The quest to deduce protein function from sequence: The role of pattern databases
6. PRINTS-S: The database formerly known as PRINTS
7. The role of pattern databases in sequence analysis
8. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
9. The PROSITE database, its status in 1995
10. Bioinformatics: The machine learning approach
11. The protein information resource (PIR)
12. The Pfam protein families database
13. ProDom and ProDom-CG: Tools for protein domain analysis and whole genome comparisons
14. Profile analysis: Detection of distantly related proteins
15. Predicting potential domain homologies from FASTA search results
16. Increased coverage of protein families with the blocks database servers
17. The PROSITE database, its status in 1999
18. Adaptive encoding neural networks for the recognition of human signal peptide cleavage sites
19. Rapid and sensitive protein similarity searches
20. Comparison of the predicted and observed secondary structure of T4 phage lysozyme
21. MIPS: A database for genomes and protein sequences
22. The domain-server: Direct prediction of protein domain-homologies from BLAST search
23. The SBASE protein domain library, release 7.0: A collection of annotated protein sequence segments
24. A simple probabilistic scoring method for protein domain identification
25. Improved tools for biological sequence comparison
26. Pfam: Multiple sequence alignments and HMM-profiles of protein domains
27. The COG database: A tool for genome-scale analysis of protein functions and evolution
28. Accelerating the convergence of the back-propagation method
29. Rapid similarity searches of nucleic acid and protein data banks