The domain-server: Direct prediction of protein domain-homologies from BLAST search

Bioinformatics

Volumn 15, Issue 4, 1999, Pages 343-344

  Murvai, János ^a   Vlahovicek, Kristian ^a   Barta, Endre ^b   Parthasarathy, Subbiah ^a   Hegyi, Hedvig ^c   Pfeiffer, Friedhelm ^d   Pongor, Sándor ^a  

^a INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Italy)

^b SZENT ISTVÁN UNIVERSITY   (Hungary)

^c YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ALGORITHM; ARTICLE; INFORMATION SCIENCE; INTERNET; MOLECULAR BIOLOGY; PRIORITY JOURNAL; PROTEIN DOMAIN; SEQUENCE HOMOLOGY;

EID: 0032930486     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/15.4.343     Document Type: Article

References (7)

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2. Barker, W.C., Garavelli, J.S., Haft, D.H., Hunt, L.T., Marzec, C.R., Orcutt, B.C., Srinivasarao, G.Y., Yeh, L.S.L., Ledley, R.S., Mewes, H.W., Pfeiffer, F. and Tsugita, A. (1998) The PIR-international protein sequence database. Nucleic Acids Res., 26, 27-32.
3. Hegyi, H. and Pongor, S. (1993) Predicting potential domain homologies from FASTA search results. Comput. Appl. Biosci., 9, 371-372.
4. Lipman, D.J. and Pearson, W.R. (1985) Rapid and sensitive protein similarity searches. Science, 227, 1435-1441.
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6. Murvai, J., Barta, E., Vlahovicek, K., Szepesvári, C., Acatrinei, C. and Pongor, S. (1999) The SBASE protein domain sequence library release 6.0. Nucleic Acids Res., 27, 257-259.
7. Wootton, J.C. (1994) Non-globular domains in protein sequences: automated segmentation using complexity measures. Computat. Chem., 18, 269-285.