A reassessment of phylogenetic relationships within the phaeophyceae based on rubisco large subunit and ribosomal DNA sequences

Journal of Phycology

Volumn 37, Issue 4, 2001, Pages 586-603

  Draisma, Stefano G A ^a   Prud'Homme Van Reine, Willem F ^a   Stam, Wytze T ^b   Olsen, Jeanine L ^b  

^a UNIVERSITEIT LEIDEN BRANCH   (Netherlands)

^b UNIVERSITY OF GRONINGEN   (Netherlands)

Author keywords

18S; 26S; Phaeophyceae; Phylogeny; RbcL; Ribosomal DNA; RUBISCO; Sphacelariales

Indexed keywords

ANALYTICAL PROCEDURES AND TECHNIQUES; DATA BASE; DNA SEQUENCE; GENETIC ANALYSIS; GENETIC CONSERVATION; GENETIC RECOMBINATION; GENETIC RELATIONSHIP; PARAPHYLY; PHYLOGENETIC ANALYSIS; PHYLOGENY; RIBOSOME DNA; SIGNAL TRANSDUCTION;

BROWN ALGA; EVOLUTION; PHYLOGENETICS;

ALGAE; CHORISTOCARPUS TENELLUS; DICTYOTALES; ECTOCARPALES; EUKARYOTA; LAMINARIALES; PHAEOPHYCEAE; PHAEOTHAMNIOPHYCEAE; SPHACELARIALES;

EID: 0034846390     PISSN: 00223646     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1529-8817.2001.037004586.x     Document Type: Article

References (89)

1. Characterization and phylogenetic position of the enigmatic golden alga Phaeothamnion confervicola: Ultrastructure, pigment composition and partial ssu rDNA sequence
2. Phaeothamniophyceae classis nova: A new lineage of Chromophytes based upon photosynthetic pigments, rbcL sequence analysis and ultrastructure
3. Global phylogeography in the cosmopolitan species Cladophora vagabunda (Chlorophyta) based on nuclear rDNA ITS sequences
4. Molecular relationships of giant kelp (Phaeophyceae)
5. Molecular phylogeny of the Laminariales (Phaeophyceae) inferred from small subunit ribosomal DNA sequences
6. Molecular evidence from nrDNA ITS sequences that Laminariocolax (Phaeophyceae, Ectocarpales sensu lato) is a worldwide clade of closely related kelp endophytes
7. Evolution of the Phaeophyta with particular reference to the Fucales
8. Genetic variabilityq within a population and between diploid/haploid tissue of Macrocystis pyrifera (Phaeophyceae)
9. Can three incongruence tests predict when data should be combined?
10. A molecular phylogeny of the heterokont algae based on analyses of chloroplast-encoded rbcL sequence data
11. Towards a new classification of the brown algae
12. Database on the structure of large subunit ribosomal RNA
13. Porterinema fluviatile (Porter) Waern (Phaeophyceae) in The Netherlands
14. Molecular and morphological phylogenies of kelp and associated brown algae
15. Comprehensive molecular phylogenetic analysis of a heterokont alga (NIES 548) using genes from all three cellular compamnents
16. Testing significance of incongruence
17. Parsimony jackknifing outperforms neighbor-joining
18. Confidence limits on phylogenies: An approach using the bootstrap
19. Eine neue phaeophycee aus dem süsswasser: Pseudobodanella peterfii nov. gen. et nov. spec
20. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
21. Syringodermatales ord. nov. and Syringoderma floridana sp. nov. (Phaeophyceae)
22. Transitions and transversions in evolutionary descent: An approach to understanding
23. The phylogenetic affinities of Myagropsis myagroides (Fucales, Phaeophyceae) as determined from 18S rDNA sequences
24. Studies on the fresh-water algae of China. XI. Sphacelaria fluviatilis, a new fresh-water brown alga
25. Assessing congruence: Empirical examples from molecular data
26. Simultaneous parsimony jackknife analysis of 2538 rbcL DNA sequences reveals support for major clades of green plants, and plants, seed plants and flowering plants
27. Homoplasy increases phylogenetic structure
28. Molecular phylogeny of the brown algal genera Akkesiphycus and Halosiphon (Laminariales), resulting in the circumscription of the new families Akkesiphycaceae and Halosiphonaceae
29. A linked 5S rRNA gene in Scytosiphon lomentaria
30. The persistence of haplodiploidy in algae
31. Phylogeny of the order Scytosiphonales (Phaeuphyceae) based on DNA sequences of rbcL, partial rbcS, and partial LSU nrDNA
32. Sexual hybridization experiments and phylogenetic relationships as inferred from RuBisCO spacer sequences in the genus Alaria (Phaeophyceae)
33. Phylogenetic relationships between Pelvetia and Pelvetiopsis (Fucaceae, Phaeophyta) inferred from sequences of the RuBisCo spacer region
34. Molecular evolution of 5S ribosomal RNA from red and brown algae
35. Phylogenetic relationships of the "golden algae" (haptophytes, heterokont chromophytes) and their plastids
36. The implications of congruence in Menidia
37. Asterocladon lobatum gen. et sp. nov., a new brown alga with stellate chloroplast arrangement, and its systematic position judged from nuclear rDNA sequences
38. The complete sequence of a brown algal mitochondrial genome, the Ectocarpale Pylaiella littoralis (L.) Kjelm
39. Ribosomal DNA sequences support taxonomic separation of the two species of Chorda: Reinstatement of Halosiphon tomentosus (Lyngbye) Jaasund (Phaeophyceae, Laminariales)
40. Systematic position of the kelp endophyte Laminarionema elsbetiae (Ectocarpales sensu lato, Phaeophyceae) inferred from nuclear ribosomal DNA sequences
41. Molecular and morphological investigations of three brown algal genera with stellate plastids: Evidence for Scytothamnales ord. Nov. (Phaeophyceae)
42. Phylogeny and historical ecology of the Desmarestiaceae (Phaeophyceae) support a southern hemisphere origin
43. Modeltest: Testing the model of DNA substitution
44. Phylogenetic relationships of the Raphidophyceae and Xanthophyceae as inferred from nucleotide sequences of the 18S ribosomal RNA gene
45. Ultrastructure of a freshwater brown alga from western Canada
46. Übersicht der bisher bekannten sphacelariaceen
47. The general stochastic model of nucleotide substitutions
48. A comprehensive phylogeny of the Phaeophyceae based on nrDNA sequences resolves the earliest divergences
49. Molecular phylogeny of European Fucales (Phaeophyceae) based on partial large-subunit rDNA sequence comparison
50. Phylogenetic relationships within Fucales (Phaeophyceae) based on combined partial SSU + LSU rDNA sequence data
51. Circumscription of the order Ectocarpales (Phaeophyceae): Bibliographical synthesis and molecular evidence
52. Adenocystaceae fam. nov. (Phaeophyceae) based on morphological and molecular evidence
53. A numerical taxonomic study of the British Phaeophyta
54. Immunological time scale for hominoid evolution
55. Nucleotide sequences of the small-subunit ribosomal RNA genes from selected Laminariales (Phaeophyta): Implications for kelp evolution
56. The phylogenetic affinities of Notheia anomala (Fucales, Phaeophyceae) as determined from partial small-subunit rRNA gene sequences
57. Phylogenetic affinities of Chrysonephele palustris (Chrysophyceae) based on inferred nuclear small-subunit ribosomal RNA sequence
58. Phylogenetic affinities of the Sarcinochrysidales and Chrysomeridales (Heterokonta) based on analysis of molecular and combined data
59. The Phaeophyceae in perspective
60. Sphacelaria lacustris sp. nov., a freshwater brown alga from Lake Michigan
61. Evolution of the Fucaceae (Phaeophyceae) inferred from nrDNA-ITS
62. Phylogenetic relationships of the brown algal orders Ectocarpales, Chordariales, Dictyosiphonales, and Tilopteridales (Phacophyceae) based on rubisco large subunit and spacer sequences
63. Ordinal names in the Phaeophyceae
64. Molecular systematics of Ectocarpus and Kuckuckia (Ectocarpales, Phaeophyceae) inferred from phylogenetic analysis of nuclear- and plastid-encoded DNA sequences
65. Estimation of evolutionary distance between nucleotide sequences
66. Phylogeny of the northeast Pacific brown algal (Phaeophycean) orders as inferred from 18S rDNA gene sequences
67. A molecular analysis of Analipus and Ralfsia (Phaeophyceae) suggests the order Ectocarpales is polyphyletic
68. A ribosomal DNA phylogeny supports the close evolutionary relationships among the Sporochnales, Desmarestiales, and Laminariales (Phaeophyceae)
69. Evolution of alternation of haploid and diploid phases in life cycles
70. The life-history of Sphacelaria furcigera Kütz. (Phaeophyceae)
71. Arctic-Antarctic disjunctions in the benthic seaweeds Acrosiphonia arcta (Chlorophyta) and Desmarestia viridis/willii (Phaeophyta) are of recent origin
72. Database on the structure of small ribosomal subunit RNA
73. Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA
74. Studies on the biogeography and ecology of the freshwater phaeophycean alga Heribaudiella fluviatilis
75. Phylogenetic incongruence: Window into genome history and molecular evolution
76. Amplification and direct sequencing of fungal ribosomal genes for phylogenetics
77. Phycological reviews 5. Recent advances in life history studies of the Phaeophyta
78. Phylogeny of Alariaceae (Phaeophyta) with special reference to Undaria based on sequences of the RuBisCo spacer region
79. Evolutionary divergence and convergence in proteins