Assessment of concordance among genealogical reconstructions from various mtDNA segments in three species of pacific salmon (genus Oncorhynchus)

Molecular Ecology

Volumn 10, Issue 9, 2001, Pages 2329-2339

  Churikov, D ^a,b,c   Matsuoka, M ^a   Luan, X ^a   Gray, A K ^a   Brykov, V L A ^b   Gharrett, A J ^a  

^a UNIVERSITY OF ALASKA FAIRBANKS   (United States)

^b INSTITUTE OF MARINE BIOLOGY   (Russian Federation)

^c UNIVERSITY OF CALIFORNIA DAVIS   (United States)

Author keywords

Gene genealogy; Haplotype and nucleotide diversities; Mitochondrial genome; Pacific salmon; PCR RFLP analysis

Indexed keywords

ADENOSINE TRIPHOSPHATASE; BIOGEOGRAPHIC DISTRIBUTION; CYTOCHROME C OXIDASE; ENZYME SUBUNIT; GENETIC LINE; GENETIC VARIANCE; HAPLOTYPE; MITOCHONDRIAL DNA; MOLECULAR ECOLOGY; PHYLOGEOGRAPHY; POLYMERASE CHAIN REACTION; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; RESTRICTION ENDONUCLEASE;

ANIMALS; DNA, MITOCHONDRIAL; FEMALE; HAPLOTYPES; MALE; ONCORHYNCHUS; PEDIGREE; POLYMERASE CHAIN REACTION; VARIATION (GENETICS);

EID: 0034803681     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2001.01354.x     Document Type: Article

References (44)

1. Mitochondrial DNA sequence variation and phylogeography among Salmo trutta L. (Greek brown trout) populations
2. Human mitochondrial DNA variation and evolution: Analysis of nucleotide sequences from seven individuals
3. The history and purview of phylogeography: A personal reflection
4. Intraspecific phylogeography: The mitochondrial DNA bridge between population genetics and systematics
5. Congruence in control-region and restriction-site variation in mitochondrial DNA, of brook charr (Salvelinus fontinalis Mitchill)
6. Comparative phylogeography of Nearctic and Palearctic fishes
7. DNA sequence variation of the mitochondrial control region among geographically and morphologically remote European brown trout Salmo trutta populations
8. Unequal synonymous substitution rates within and between two protein-coding mitochondrial genes
9. Biogeographic implications of cytochrome b sequences and allozymes in sockeye (Onchorynchus nerka)
10. Mitochondrial DNA diversity in fishes and its implications for introductions
11. Rapid evolution of animal mitochondrial DNA
12. Intraspecific DNA sequence variation of the mitochondrial control region of white sturgeon (Acipenser transmontanus)
13. Polymorphic sites and the mechanism of evolution in human mitochondrial DNA
14. Mitochondrial DNA variation in chinook (Onchorynchus tshavytscha) and chum salmon (O. keta) detected by restriction enzyme analysis of polymerase chain reaction (PCR) products
15. Sampling properties of DNA sequence data in phylogenetic analysis
16. Phylogenetically informative length polymorphism and sequence variability in mitochondrial DNA of Australian songbirds (Pomatostomus)
17. Phylogeography and population structure of the Atlantic and Mediterranean green turtle Chelonia midas: A mitochondrial control region assesssment
18. Mitochondrial DNA evolution in mice
19. Geographic analysis of nucleotide diversity and song sparrow (Aves: Emberizidae) population history
20. Mitochondrial DNA variation in Alaskan coho salmon, Onchorhynchus kisutch
21. Mitochondrial control region and protein coding genes sequence variation among phenotypic forms of brown trout Salmo trutta from northern Italy
22. Why restriction site polymorphism analysis of mitochondrial DNA failed to resolve sardine (Sardinops) biogeography: Insights from mitochondrial DNA cytochrome b sequences
23. Evolution of the cetacean mitochondrial D-loop region
24. Intraspecific nucleotide sequence differences in the major noncoding region of human mitochondrial DNA
25. The complete mitochondrial DNA sequence of the Atlantic salmon, Salmo salar
26. Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers
27. REAP: An integrated environment for the manipulation and phylogenetic analysis of restriction data
28. Evolution of mitochondrial DNA in fishes
29. Molecular phylogenetic studies of fish
30. DNA polymorphism detectable by restriction endonucleases
31. Differences in genetic diversity for mitochondrial DNA, between hatchery and wild populations of Oncorhynchus
32. Low levels of intraspecific variation in the mitochondrial DNA of chum salmon (Oncorhynchus keta)
33. A mtDNA analysis of spatiotemporal distribution of two sympatric larval populations of rainbow smelt (Osmerus mordax) in the St. Lawrence River estuary, Quebec Canada
34. Comparison of phylogenetic trees
35. The main regulatory region of mammalian mitochondrial DNA: Structure-function model and evolutionary pattern
36. Evolution of the salmonid mitochondrial control region
37. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation
38. A comparison of mtDNA restriction sites vs. control region Sequences in phylogeographic assessment of the musk turtle (Sternotherus minor)
39. Mitochondrial DNA analysis of Pacific Northwest populations of Onchorynchus tshawytscha
40. The complete nucleotide sequence of the mitochondrial DNA genome of the rainbow trout, Onchorynchus mykiss