Relationships among Nicotiana species revealed by the 5S rDNA spacer sequence and fluorescence in situ hybridization

Theoretical and Applied Genetics

Volumn 103, Issue 5, 2001, Pages 678-686

  Kitamura, S ^a   Inoue, M ^a   Shikazono, N ^b   Tanaka, A ^b  

^a KYOTO PREFECTURAL UNIVERSITY   (Japan)

^b JAPAN ATOMIC ENERGY AGENCY   (Japan)

Author keywords

5S rDNA spacer sequence; Fluorescence in situ hybridization (FISH); Molecular phylogeny; Nicotiana

Indexed keywords

AMPHIPLOIDY; CHROMOSOME NUMBER; DNA FRAGMENT; FLUORESCENCE IN SITU HYBRIDIZATION; GENETIC CORRELATION; GENETIC RELATIONSHIP; GENETIC VARIANCE; INTERGENIC SPACER; PHYLOGENY; PLANT GENETICS; POLYMERASE CHAIN REACTION; RIBOSOME DNA; SEQUENCE ALIGNMENT;

CHROMOSOMES; FLUORESCENCE; GENETIC ALGORITHMS; PLANTS (BOTANY);

HYBRIDIZATION;

DNA SEQUENCES;

EID: 0034777473     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220100643     Document Type: Article

References (48)

1. Molecular phylogeny of Nicotiana (Solanaceae) based on the nucleotide sequence of the matK gene
2. Comparison of the mitochondrial genome of Nicotiana tabacum with its progenitor species
3. A physiological and molecular analysis of the genus Nicotiana
4. Sequence and organization of 5S ribosomal RNA-encoding genes of Arabidopsis thaliana
5. Sequence of the 5S ribosomal RNA gene from Sinapis alba
6. Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons
7. The structure and evolution of the human β-globin gene family
8. On spacers
9. Physical mapping of 5S rDNA loci by direct-cloned biotinylated probes in barley chromosomes
10. Mapping of 5-methylcytosine residues in Nicotiana tabacum 5S rRNA genes by genomic sequencing
11. Characterization of a new family of tobacco highly repetitive DNA, GRS, specific for the Nicotiana tomentosiformis genomic component
12. Sequence organisation of the repeating units in the nucleus of wheat which contain 5S rRNA genes
13. Segregation in new allopolyploids of Nicotiana. I. Comparison of 6x (N. tabacum×tomentosiformis) and 6x (N. tabacum×otophora)
14. Segregation in new allopolyploids of Nicotiana. II. Discordant ratios from individual loci in 6x (N. tabacum×N. sylvestris)
15. Sequence variation and methylation of the flax 5S RNA genes
16. Interspecific hybridization in Nicotiana. VIII. The sylvestris-tomentosa-tabacum hybrid triangle and its bearing on the origin of tabacum
17. Origin of Nicotiana tabacum L. detected by polypeptide composition of Fraction I protein
18. 5S ribosomal RNA sequences inappropriate for phylogenetic reconstruction
19. Structure of the TFIIIA-5S DNA complex
20. Intraspecific and interspecific variation in 5S RNA genes are decoupled in diploid wheat relatives
21. Characterization of the Nicotiana tabacum L. genome by molecular cytogenetics
22. Quantitative chromosome maps and rDNA localization in the T subgenome of Nicotiana tabacum L. and its putative progenitors
23. The distribution of tobacco HRS60 DNA repeated sequences in species of the genus Nicotiana
24. Molecular cytogenetic analyses and phylogenetic studies in the Nicotiana section Tomentosae
25. NTRS, a new family of highly repetitive DNAs specific for the T1 chromosome of tobacco
26. Rapid isolation of high-molecular-weight plant DNA
27. Karyotype analysis of Nicotiana kawakamii Y. Ohashi using DAPI banding and rDNA FISH
28. Nuclear DNA changes, genome differentiation and evolution in Nicotiana (Solanaceae)
29. Plant transposable elements
30. Tobacco single-copy DNA is highly homologous to sequences present in the genomes of its diploid progenitors
31. Chloroplast DNA and phylogenetic studies in the Asteridae
32. TREEVIEW: An application to display phylogenetic trees on personal computers
33. The 5S gene internal control region is composed of three distinct sequence elements, organized as two functional domains with variable spacing
34. Cytogenetic evolution and aneuploidy in Nicotiana
35. Structure and expression of the gene family encoding putrescine N-methyltransferase in Nicotiana tabacum: New clues to the evolutionary origin of cultivated tobacco
36. The neighbor-joining method: A new method for reconstructing phylogenetic trees
37. Evolutionary rates of insertion and deletion in non-coding nucleotide sequences of primates
38. An overview of evolution in plant 5S DNA
39. Frequent duplication and deletion events in the 5S RNA genes and the associated spacer regions of the Triticeae
40. The genus as a genetic resource
41. Contributions of plant molecular systematics to studies of molecular evolution
42. Assessing the reliability of 5S rRNA sequence data for phylogenetic analysis in green plants
43. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
44. Molecular organization and evolution of the external transcribed rDNA spacer region in two diploid relatives of Nicotiana tabacum (Solanaceae)
45. Molecular phylogenetic studies on filarial parasites based on 5S ribosomal spacer sequences