Isolation of the Schizosaccharomyces pombe RAD54 homologue, rhp54+, a gene involved in the repair of radiation damage and replication fidelity

Journal of Cell Science

Volumn 109, Issue 1, 1996, Pages 73-81

  Muris, Daan F R ^a   Vreeken, Kees ^a   Carr, Antony M ^b   Murray, Johanne M ^c   Smit, Claudia ^a   Lohman, Paul H M ^a   Pastink, Albert ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

^b MRC Cell Mutation Unit   (United Kingdom)

^c UNIVERSITY OF SUSSEX   (United Kingdom)

Author keywords

DNA repair; DNA replication; Fission yeast; RAD54; rhp54+

Indexed keywords

HELICASE; PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CELL CYCLE S PHASE; CELL NUCLEUS; CELL SHAPE; CELL VIABILITY; CHROMOSOME LOSS; CONTROLLED STUDY; DELETION MUTANT; DNA CONTENT; DNA DAMAGE; DNA REPAIR; DNA REPLICATION; FLUORESCENCE MICROSCOPY; GENE ISOLATION; GENE MUTATION; IONIZING RADIATION; MINICHROMOSOME; NONHUMAN; PRIORITY JOURNAL; RADIATION INJURY; SCHIZOSACCHAROMYCES POMBE; ULTRAVIOLET RADIATION; X RAY;

AMINO ACID SEQUENCE; BASE SEQUENCE; DNA HELICASES; DNA REPAIR; DNA, FUNGAL; FUNGAL PROTEINS; GENE DELETION; GENES, FUNGAL; MOLECULAR SEQUENCE DATA; SACCHAROMYCES CEREVISIAE PROTEINS; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE PROTEINS; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY, AMINO ACID;

SACCHAROMYCES CEREVISIAE; SCHIZOSACCHAROMYCES POMBE;

EID: 0030043199     PISSN: 00219533     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (54)

1. Al-Khodairy, F. and Carr, A. M. (1992). DNA repair mutants defining G2 checkpoint pathways in Schizosaccharomyces pombe. EMBO J. 11, 1343-1350.
2. Al-Khodairy, F., Fotou, E., Sheldrick, K. S., Griffiths, D. J. F., Lehmann, A. R. and Carr, A. M. (1994). Identification and characterization of new elements involved in checkpoint and feedback controls in fission yeast. Mol Biol. Cell 5, 147-160.
3. Barbet, N., Muriel, W. J. and Carr, A. M. (1992). Versatile shuttle vectors and genomic libraries for use with Schizosaccharomyces pombe. Gene 114, 59-66.
4. Bendixen, C., Sunjevaric, I., Bauchwitz, R. and Rothstein, R. (1994) Identification of a mouse homologue of the Saccharomyces cerevisiae recombination and repair gene, RAD52. Genomics 23, 300-303.
5. Bezzubova, O., Shinohara, A., Mueller, R. G., Ogawa, H. and Buerstedde, J.-M. (1993). A chicken RAD51 homologue is expressed at high levels in lymphoid and reproductive organs. Nucl. Acids Res. 21, 1577-1580.
6. Bezzubova, O. Y. and Buerstedde, J.-M. (1994) Gene conversion in the chicken immunoglobulin locus: a paradigm of homologous recombination in higher eukaryotes. Experientia 50, 270-276.
7. Bowman, K. K., Sidik, K., Smith, C. A., Taylor, J.-S., Doetsch, P. W. and Freyer, G. A. (1994). A new ATP-independent DNA endonuclease from Schizosaccharomyces pombe that recognizes cyclobutane pyrimidine dimers and 6-4 photoproducts. Nucl. Acids Res. 22, 3026-3032.
8. cdc2 in establishing the dependency of S phase on mitosis. Nature 349, 388-393.
9. Calderon, I. L., Contopoulou, C. R. and Mortimer, R. K. (1983). Isolation and characterization of yeast DNA repair genes. II. Isolation of plasmids that complement the mutations rad50-1, rad51-1, rad54-3, and rad55-3. Curr Genet 7, 93-100.
10. Carr, A. M., Sheldrick, K. S., Murray, J. M., Al-Harithy, R., Watts, F. Z. and Lehmann, A. R. (1993). Evolutionary conservation of the excision repair in Schizosaccharomyces pombe: evidence for a family of sequences related to the Saccharomyces cerevisiae RAD2 gene. Nucl. Acids Res. 21, 1345-1349.
11. Carr, A. M., Schmidt, H., Kirchhoff, S., Muriel, W. J., Sheldrick, K. S., Griffiths, D. J., Basmacioglu, C. N., Subramani, S., Clegg, M., Nasim, A. and Lehmann, A. R. (1994). The rad16 gene of Schizosaccharomyces pombe: a homolog of the RAD1 gene of Saccharomyces cerevisiae. Mol Cell. Biol. 14, 2029-20240.
12. Cole, G. M., Schild, D., Lovett, S. T. and Mortimer, R. K. (1987). Regulation of RAD54- RAD52-lacZ gene fusions in Saccharomyces cerevisiae in response to DNA damage. Mol. Cell. Biol. 7, 1087-1084.
13. Cole, G. M. and Mortimer, R. K. (1989). Failure to induce a DNA repair gene. RAD54, in Saccharomyces cerevisiae does not affect DNA repair of recombination phenotypes. Mol. Cell. Biol. 9, 3314-3322
14. Corpet, F. (1988). Multiple sequence alignment with hierarchical clustering Nucl. Acids Res. 16, 10881-10890.
15. Emery, H. S., Schild, D., Kellogg, D. E. and Mortimer, R. K. (1991). Sequence of RAD54, a Saccharomyces cerevisiae gene involved in recombinational repair. Gene 104, 103-106.
16. Fenech, M., Carr, A. M., Murray, J., Watts, F. Z. and Lehmann, A. R. (1991) Cloning and characterization of the rad4 gene of Schizosaccharomyces pombe; a gene showing short regions of sequence similarity to the human XRCCI gene Nucl. Acids Res. 19, 6737-6741.
17. Friedberg, E. C. (1988). Deoxyribonucleic acid repair in the yeast Saccharomyces cerevisiae. Microbiol. Rev. 52, 70-102.
18. Game, J.C. (1993). DNA double-strand breaks and the RAD50-RAD57 genes in Saccharomyces. Semin. Cancer Biol. 4, 73-83
19. Glassner, B. J. and Mortimer, R. K. (1994). Synergistic interactions between RAD5, RAD16 and RAD54, three partially homologous yeast DNA repair genes each in a different repair pathway. Radiat. Res. 139, 24-33.
20. Gorbalenya, A. E. and Koonin, E. V. (1993). Helicases: amino acid sequence comparisons and structure-function relationships. Curr. Opin. Struct. Biol. 3, 419-429.
21. Gutz, H., Heslot, H., Leupold, U. and Loprieno, N. (1974). In Handbook of Genetics, vol. 1 (ed. R. C. King), pp. 395-446. Plenum Press, New York.
22. Harrington, J. J. and Lieber, M. R. (1994). Functional domains within FEN-1 and RAD2 define a family of structure specific endonucleases: implications for nucleotide excision repair. Genes Dev. 8, 1344-1355.
23. Haynes, R. H. and Kunz, B. A. (1981). In The Molecular Biology of the yeast Saccharomyces cerevisiae: Life Cycle and Inheritance (ed. J. Strathern, E. W Jones, and J. R. Broach), pp. 371-414. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
24. Hoheisel, J. D., Maier, E., Mott, R., McCarthy, L., Grigoriev, A. V., Schalkwyk, L. C., Nizetic, D., Francis, F. and Lehrach, H. (1993). High resolution cosmid and P1 maps spanning the 14 Mb genome of the fission yeast S. pombe. Cell 73, 109-120.
25. +, a Schizosaccharomyces pombe homolog of the Saccharomyces cerevisiae RAD51 gene. Gene 142, 207-211.
26. Kans, J. A. and Mortimer, R. K. (1991). Nucleotide sequence of the RAD57 gene of Saccharomyces cerevisiae. Gene 105, 139-140.
27. Käufer, N. F., Simanis, V. and Nurse, P. (1985). Fission yeast Schizosaccharomyces pombe correctly excises a mammalian RNA transcript intervening sequence. Nature 318, 78-80.
28. Koken, M. H. M., Vreeken, C., Bol, S. A. M., Cheng, N. C., Jaspers-Dekker, I., Hoeijmakers, J. H. J., Eeken, J. C. J., Weeda, G. and Pastink, A. (1992). Cloning and characterization of the Drosophila homolog of the xeroderma pigmentosum complementation-group B correcting gene, ERCC3. Nucl. Acids Res. 20, 5541-5548.
29. Lehmann, A. R., Carr, A. M., Watts, F. Z. and Murray, J. M. (1991) DNA repair in the fission yeast, Schizosaccharomyces pombe. Mutat. Res. 250, 205-210.
30. Maniatis, T., Fritsch, E. F. and Sambrook, J. (1982). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor University Press, Cold Spring Harbor.
31. Morita, T., Yoshimura, Y., Yamamoto, A., Murata, K., Mori, M., Yamamoto, H. and Matsushiro, A. (1993) A mouse homolog of the Escherichia coli recA and Saccharomyces cerevisiae RAD51 genes. Proc. Nat. Acad. Sci USA 90, 6577-6580.
32. Muris, D. F. R., Vreeken, K., Carr, A. M., Broughton, B. C., Lehmann, A. R., Lohman, P. H. M. and Pastink, A. (1993). Cloning the RAD51 homologue of Schizosaccharomyces pombe. Nucl. Acids Res. 21, 4586-4591.
33. Muris, D. F. R., Bezzubova, O., Buerstedde, J.-M., Vreeken, K., Balajee, A. S., Osgood, C. J., Troelstra, C., Hoeijmakers, J. H. J., Ostermann, K., Schmidt, H., Natarajan, A. T., Eeken, J. C. J., Lohman, P. H. M. and Pastink, A. (1994). Cloning of the human and mouse genes homologous to RAD52, a yeast gene involved in DNA repair and recombination. Mutat. Res. 315, 295-305.
34. Murray, J. M., Carr, A. M., Lehmann, A. R. and Watts, F. Z. (1991). Cloning and characterization of the rad9 DNA repair gene from Schizosaccharomyces pombe. Nucl. Acids Res. 19, 3525-3531.
35. Murray, J. M., Doe, C. L., Schenk, P., Carr, A. M., Lehmann, A. R. and Watts, F. Z. (1992). Cloning and characterization of the S. pombe rad15 gene, a homologue to the S. cerevisiae RAD3 and human ERCC2 genes. Nucl. Acids Res. 20, 2673-2678.
36. Murray, J. M., Tavassoli, M., Al-Harithy, R., Sheldrick, K. S., Lehmann, A. R., Carr, A. M. and Watts, F. Z. (1994). Structural and functional conservation of the human homolog of the Schizosaccharomyces pombe rad2 gene, which is required for chromosome segregation and recovery from DNA damage. Mol. Cell. Biol 14, 4878-4888.
37. Newlon, C.S. (1988). Yeast chromosome replication and segregation. Microb. Rev. 52, 568-601.
38. Niwa, O., Matsumoto, T. and Yanagida, M. (1986). Construction of a minichromosome by deletion and its mitotic and meiotic behaviour in fission yeast. Mol. Gen. Genet. 203, 397-405.
39. Ostermann, K., Lorentz, A. and Schmidt, H. (1993). The fission yeast rad22 gene, having a function in mating type switching and repair of DNA damages, encodes a protein homolog to rad52 of Saccharomyces cerevisiae. Nucl. Acids Res. 21, 5940-5944.
40. Petes, T. D., Malone, R. E. and Symington, L. S. (1991). Recombination in yeast. In The Molecular and Cellular Biology of the Yeast Saccharomyces: Genome Dynamics, Protein Synthesis, and Energetics (ed. J. Broach, J. Pringle and E. Jones), pp. 407-521. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
41. Phipps, J., Nasim, A. and Miller, D. R. (1985). Recovery, repair, and mutagenesis in Schizosaccharomyces pombe. Advan. Genet. 23, 1-72.
42. Reagan, M. S., Pittenger, C., Siede, W. and Friedberg, E. C. (1995). Characterization of a yeast strain deleted for the RAD27 gene, a structural homolog of the RAD2 nucleotide excision repair gene. J. Bacteriol. 177, 364-371.
43. + gene of Schizosaccharomyces pombe: a structural and functional homolog of the RAD6 gene from the distantly related yeast Saccharomyces cerevisiae. EMBO J. 9, 1423-1430.
44. Rossi, A. M., Tates, A. D., Van Zeeland, A. A. and Vrieling, H. (1992). Molecular analysis of mutations affecting hprt mRNA splicing in human T-lymphocytes in vivo. Environ. Mol. Mutagen 19, 7-13.
45. Russell, P. R. (1989). Gene cloning and expression in fission yeast. In Molecular Biology of the Fission Yeast (ed. A. Nasim, P. Young and B. Johnson), pp. 243-271. Academic Press Inc., London.
46. Sanger, F., Nicklen, S. and Coulson, A. R. (1977). DNA sequencing with chain-termination inhibitors. Proc Nat. Acad. Sci. USA 74, 5463-5467.
47. Sheldrick, K. S. and Carr, A. M. (1993). Feedback controls and G2 checkpoints, fission yeast as a model system. BioEssays 15, 775-782.
48. Sherman, F., Fink, G. R. and Hicks, J. B. (1986). Methods in Yeast Genetics. 125 Cold Spring Harbor Laboratory Press. Cold Spring Harbor, New York.
49. Shinohara, A., Ogawa, H., Matsuda, Y., Ushio, N., Ikeo, K. and Ogawa, T. (1993). Cloning of human, mouse and fission yeast recombination genes homologues to RAD51 and recA. Nature Genet. 4, 239-243.
50. Subramani, S. (1991). Radiation resistance in Schizosaccharomyces pombe. Mol. Microbiol 5, 2311-2314.
51. Troelstra, C., van Gool, A., de Wit, J., Vermeulen, W., Bootsma, D. and Hoeijmakers, J. H. J. (1992). ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes. Cell 71, 939-953.
52. Waga, S. Bauer, G and Stillman, B. (1994) Reconstitution of complete SV40 DNA replication with purified replication factors. J. Biol. Chem. 14, 10923-10934.
53. Walworth, N., Davey, S. and Beach, D. (1993). Fission yeast chk1 protein kinase links the rad checkpoint pathway to cdc2. Nature 363, 368-371.
54. Yanisch-Perron, C., Vieira, J. and Messing, J. (1985). Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33, 103-119.