A 3-dimensional model building by homology of the HFE protein: Molecular consequences and application to antibody development

Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology

Volumn 1481, Issue 2, 2000, Pages 213-221

  Dupradeau, François Yves ^a   Altenberg Greulich, Brigitte ^b   Warin, Renaud ^a   Fuentes, Vincent ^a   Monti, Jean Pierre ^a   Rochette, Jacques ^a  

^a UNIVERSITÉ DE PICARDIE JULES VERNE   (France)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

Alignment; Antibody; Hemochromatosis; HFE; Homology modeling

Indexed keywords

AMINO ACID SEQUENCE; ANTIBODY PRODUCTION; ARTICLE; HEMOCHROMATOSIS; HUMAN; IMMUNOGENICITY; IRON METABOLISM; PATHOPHYSIOLOGY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ANTIBODY FORMATION; EPITOPES; EVOLUTION, MOLECULAR; GENES, MHC CLASS I; HEMOCHROMATOSIS; HISTOCOMPATIBILITY ANTIGENS CLASS I; HLA ANTIGENS; HUMAN; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTATION; PEPTIDES; PROTEIN ENGINEERING; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SUPPORT, NON-U.S. GOV'T;

EID: 0034730678     PISSN: 01674838     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-4838(00)00126-6     Document Type: Article

References (41)

1. Merryweather-Clarke A.T., Pointon J.J., Shearman J.D., Robson K.J.H. J. Med. Gen. 34:1997;275-278.
2. Feder J.N., Gnirke A., Thomas W., Tsuchihashi Z., Ruddy D.A., Basava A., Dormishian F., Domingo R. Jr., Ellis M.C., Fullan A., Hinton L.M., Jones N.L., Kimmel B.E., Kronmal G.S., Lauer P., Lee V.K., Loeb D.B., Mapa F.A., McClelland E., Meyer N.C., Mintier G.A., Moeller N., Moore T., Morikang E., Prass C.E., Quintana L., Starnes S.M., Schatzman R.C., Brunke K.J., Drayna D.T., Risch N.J., Bacon B.R., Wolff R.K. Nat. Genet. 13:1996;399-408.
3. Feder J.N., Tsuchihashi Z., Irrinki A., Lee V.K., Mapa F.A., Morikang E., Prass C.E., Starnes S.M., Wolff R.K., Parkkila S., Sly W.S., Schatzman R.C. J. Biol. Chem. 272:1997;14025-14028.
4. Waheed A., Parkkila S., Zhou X.Y., Tomatsu S., Tsuchihashi Z., Feder J.N., Schatzman R.C., Britton R.S., Bacon B.R., Sly W.S. Proc. Natl. Acad. Sci. USA. 94:1997;12384-12389.
5. Lebron J.A., Bennett M.J., Vaughn D.E., Chirino A.J., Snow P.M., Mintier G.A., Feder J.N., Bjorkman P.J. Cell. 93:1998;111-123.
6. Rochette J., Pointon J.J., Fisher C.A., Perera G., Arambepola M., KodikaraArichchi D.S., De Silva S., Vandwalle J.L., Monti J.-P., Old J.M., Merryweather-Clark A.T., Wetherall D.J., Robson K.J.H. Am. J. Hum. Genet. 64:1999;1056-1062.
7. Wallace D.F., Dooley J.S., Walker A.P. Gastroenterology. 116:1999;1409-1412.
8. Bairoch A., Apweiler R. Nucleic Acids Res. 24:1996;21-25.
9. Bernstein F.C., Koetzle T.F., Williams G.J.B., Meyer E.F., Brice M.D., Rodgers J.R., Kennard O., Shimanouchi T., Tasumi M. J. Mol. Biol. 112:1977;535-542.
10. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. J. Mol. Biol. 215:1990;403-410.
11. Huynen M., Doerks T., Eisenhaber F., Orengo C., Sunyaev S., Yuan Y., Bork P. J. Mol. Biol. 280:1998;323-326.
12. http://www.embl-heidelberg.de/~rost/wwwServices.html.
13. Sander C., Schneider R. Proteins. 9:1991;56-68.
14. Rost B. Methods Enzymol. 266:1996;525-539.
15. Corpet F. Nucleic Acids Res. 16:1988;10881-10890.
16. Hooft R.W.W., Vriend G., Sander C., Abola E.E. Nature. 381:1996;272.
17. Vriend G. J. Mol. Graph. 8:1990;52-56.
18. W.F. Van Gunsteren, H.J.C. Berendsen, BIOMOS, Biomolecular software, Lab. Phys. Chem., University of Groningen, The Netherlands, 1987.
19. Maple J., Dinur U., Hagler A.T. Proc. Natl. Acad. Sci. USA. 85:1988;5350-5354.
20. http://www.msi.com/support/discover/forcefield/cff9x-refs.html.
21. Dayringer H.E., Tramontano A., Sprang S.R., Fletterick R.J. J. Mol. Graph. 4:1986;82-87.
22. Chinea G., Padron G., Hooft R.W., Sander C., Vriend G. Proteins. 23:1995;415-421.
23. Jones T.A., Thirup S. EMBO J. 5:1986;819-822.
24. Merrifield R.B. Science. 232:1986;341-347.
25. Vaitukaitis J.L. Methods Enzymol. 73:1981;46-52.
26. Sundstrom C., Nilsson K. Int. J. Cancer. 17:1976;565-577.
27. Bayer E., Wilchek M. Methods Enzymol. 34:1974;265-267.
28. Lassoued K., Nunez C.A., Billips L., Kubagawa H., Monteiro R.C., Lebien T.W., Cooper W.D. Cell. 76:1993;73-86.
29. E. Harlow, D. Lane, in: Anticorps, Edition Pradel, Paris, 1991, pp. 636-640.
30. Guo H.-C., Jardetzky T.S., Garrett T.P.J., Lane W.S., Strominger J.L., Wiley D.C. Nature. 360:1992;364-366.
31. Rost B., O'Donoghue S. Cabios. 13:1997;345-356.
32. Perutz M.F., Lehmann H. Nature. 219:1968;902-909.
33. De Filippis V., Sander C., Vriend G. Protein Eng. 7:1994;1203-1208.
34. Dao-pin S., Sauer U., Nicholson H., Matthews B.W. Biochemistry. 30:1991;7142-7153.
35. Granzin J., Puras-Lutzke R., Landt O., Grunert H.P., Heinemann U. J. Mol. Biol. 225:1992;533-542.
36. Beutler E., Gelbart T., West C., Lee P., Adams M., Blackstone R., Pockros P., Kosty M., Venditti C.P., Phatak P.D., Seese N.K., Chorney K.A., TenElshof A.E., Gerhard G.S., Chorney M. Blood Cells Mol. Dis. 22:1996;187-194.
37. Thunissen M.M.G.M., Franken P.A., Haas G.H., De Drenth J., Kalk K.H., Tong L., De Vos A.M., Milburn M.V., Kim S.H. J. Mol. Biol. 217:1992;503-516.
38. Smith M.J., Hjorsteg K., Romeo P.H., Rosa J., Paul K.G. FEBS Lett. 169:1984;147-150.
39. http://swift.embl-heidelberg.de/future/overview/antigen.html.
40. Bastin J.M., Jones M., O'Callaghan C.A., Schimanski L., Mason D.Y., Townsend A.R.M. Br. J. Haematol. 103:1998;931-941.
41. Hughes A.L., Yeager M., Ten Elshof A.E., Chorney M.J. Immunol. Today. 20:1999;22-26.