Structural analysis of arabidopsis thaliana chromosome 5. VII. Sequence features of the regions of 1,013,767 bp covered by sixteen physically assigned P1 and TAC clones

DNA Research

Volumn 5, Issue 5, 1998, Pages 297-308

  Nakamura, Yasukazu ^a   Sato, Shusei ^a   Asamizu, Erika ^a   Kaneko, Takakazu ^a   Kotani, Hirokazu ^a   Miyajima, Nobuyuki ^a   Tabata, Satoshi ^a  

^a KAZUSA DNA RESEARCH INSTITUTE   (Japan)

Author keywords

Arabidopsis thaliana chromosome 5; Gene prediction; Genomic sequence; P1 genomic library; TAC genomic library

Indexed keywords

VEGETABLE PROTEIN;

ANIMAL; ARABIDOPSIS; ARTICLE; CHROMOSOME; CHROMOSOME MAP; COMPUTER PROGRAM; DNA SEQUENCE; EXON; GENE; GENE LIBRARY; GENETIC MARKER; GENETICS; HAMSTER; INTRON; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS;

ANIMALS; ARABIDOPSIS; CHROMOSOMES; CLONING, MOLECULAR; CRICETINAE; EXONS; GENES, PLANT; GENETIC MARKERS; GENOMIC LIBRARY; INTRONS; MOLECULAR SEQUENCE DATA; PHYSICAL CHROMOSOME MAPPING; PLANT PROTEINS; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 0032582379     PISSN: 13402838     EISSN: None     Source Type: Journal    
DOI: 10.1093/dnares/5.5.297     Document Type: Article

References (13)

1. Kotani, H., Sato, S., Liu, Y.-G. et al. 1997, A fine physical map of Arabidopsis thaliana chromosome 5: Construction of a sequence-ready contig map, DNA Res., 4, 371-378.
2. Sato, S., Kotani, H., Hayashi, R. et al. 1998, A physical map of Arabidopsis thaliana chromosome 3 represented by two contigs of CIC YAC, P1, TAC and BAC clones, DNA Res., 5, 163-168.
3. Creusot, F., Fouilloux, E., Dron, M. et al. 1995, The CIC library: a large insert YAC library for genome mapping in Arabidopsis thaliana, Plant J., 8, 763-770.
4. Liu, Y.-G., Mitsukawa, N., Vazquez-Tello, A., and Whittier, R. F. 1995, Generation of a high-quality P1 library of Arabidopsis suitable for chromosome walking, Plant J., 7, 351-358.
5. Sato, S., Kotani, IL, Nakamura, Y. et al. 1997, Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones, DNA Res., 4, 215-230.
6. Kotani, H., Nakamura, Y., Sato, S. et al. 1997, Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones, DNA Res., 4, 291-300.
7. Nakamura, Y., Sato, S., Kaneko, T. et al. 1997, Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence features of the regions of 1,191,918 bp covered by seventeen physically assigned P1 clones, DNA Res., 4, 401-414.
8. Sato, S., Kaneko, T., Kotani, IL et al. 1998, Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones, DNA Res., 5, 41-54.
9. Kaneko, T., Kotani, H., Y. Nakamura et al. 1998, Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones, DNA Res., 5, 131-145.
10. Kotani, H., Nakamura, Y., Sato, S. et al. 1997, Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones, DNA Res., 5, 203-216.
11. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403-410.
12. Uberbacher, E. C. and Mural, R. J. 1991, Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach, Proc. Natl. Acad. Sci. USA, 88, 11261-11265.
13. Solovyev, V. V., Salamov, A. A., and Lawrence, C. B. 1994, Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames, Nucl. Acids Res., 22, 5156-5163.