Stimulation by ammonium-based fertilizers of methane oxidation in soil around rice roots

Nature

Volumn 403, Issue 6768, 2000, Pages 421-424

  Bodelier, Paul L E ^a,b   Roslev, Peter ^c   Henckel, Thilo ^a   Frenzel, Peter ^a  

^a MAX PLANCK INSTITUTE FOR TERRESTRIAL MICROBIOLOGY   (Germany)

^b NETHERLANDS INSTITUTE OF ECOLOGY NIOO KNAW   (Netherlands)

^c AALBORG UNIVERSITY   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; FATTY ACID DERIVATIVE; FERTILIZER; METHANE; PHOSPHOLIPID;

AMMONIUM; FERTILIZER; METHANE; OXIDATION; SOIL;

AGRICULTURE; AIR POLLUTION; ARTICLE; GREENHOUSE EFFECT; METHANOTROPHIC BACTERIUM; NUCLEOTIDE SEQUENCE; PLANT ROOT; PRIORITY JOURNAL; RICE; SOIL MICROFLORA;

BACTERIA, AEROBIC; FATTY ACIDS; FERTILIZERS; METHANE; METHYLOSINUS; ORYZA SATIVA; OXIDATION-REDUCTION; PLANT ROOTS; PROTEOBACTERIA; QUATERNARY AMMONIUM COMPOUNDS; SOIL MICROBIOLOGY;

ALGAE; BACTERIA (MICROORGANISMS); FUNGI;

EID: 0034719497     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/35000193     Document Type: Article

References (27)

1. Crutzen, P. J. in Ruminant Physiology: Digestion, Metabolism, Growth and Reproduction (eds von Engelhardt, W., Leonhardt-Marek, S., Breves, G. & Giesecke, D.) 291-315 (Enke, Stuttgart, Germany).
2. Neue, H. U. Fluxes of methane from rice fields and potential for mitigation. Soil Use Mgmt 13, 258-267 (1997).
3. Cassman, K. G. et al. Opportunities for increased nitrogen-use efficiency from improved resource management in irrigated rice systems. Field Crops Res. 56, 7-39 (1998).
4. Denier van der Gon, H. A. C. & Neue, H. U. Oxidation of methane in the rhizosphere of rice plants. Biol. Fertil. Soils 22, 359-366 (1996).
5. Bosse, U. & Frenzel, P. Activity and distribution of methane-oxidizing bacteria in flooded rice soil microcosms and in rice plants (Oryza sativa). Appl. Environ. Microbiol. 63, 1199-1207 (1997).
6. Steudler, P. A., Bowden, R. D., Mellilo, J. M. & Aber J. D. Influence of nitrogen fertilization on methane uptake in temperate forest soil. Nature 341, 314-316 (1989).
7. King, G. M. & Schnell, S. Effect of increasing atmospheric methane concentration on ammonium inhibition of soil methane consumption. Nature 370, 282-284 (1994).
8. 4 -oxidizer populations across sites. Soil Biol. Biochem. 29, 13-21 (1997).
9. Bosse, U., Frenzel, P. & Conrad, R. Inhibition of methane oxidation by ammonium in the surface layer of a littoral sediment. FEMS Microbiol. Ecol. 13, 123-134 (1993).
10. Van der Nat, F. J. W. A., DeBrouwer, J. F. C., Middelburg, J. J. & Laanbroek, H. J. Spatial distribution and inhibition by ammonium of methane oxidation in intertidal freshwater marshes. Appl. Environ. Microbiol. 63, 4734-4740 (1997).
11. Roslev, P., Iversen N. & Henriksen K. Direct fingerprinting of metabolically active bacteria in environmental samples by substrate specific radiolabelling and lipid analysis. J. Microbiol. Methods 31, 99-111 (1998).
12. Henckel, T., Friedrich, M. & Conrad, R. Molecular analysis of the methane-oxidizing microbial community in rice field soil by targeting the genes of the 16S rRNA, particulate methane monooxygenase, and methanol dehydrogenase. Appl. Environ. Microbiol. 65, 1980-1990 (1999).
13. Hanson, R. S. & Hanson, T. E. Methanotrophic bacteria. Microbiol. Rev. 60, 439-471 (1996).
14. King, G. M. Associations of methanotrophs with the roots and rhizomes of aquatic vegetation. Appl. Environ. Microbiol. 60, 3220-3227 (1994).
15. 4 oxidation: the activity of bacteria, their distribution and the microenvironment. Soil Biol. Biochem. 30, 1903-1916.
16. Sundh, I., Borgå, P., Nilsson, M. & Svensson, B. H. Estimation of cell numbers of methanotrophic bacteria in boreal peatlands based on analysis of specific phopholipid fatty acids. FEMS Microbiol. Ecol. 18, 103-112 (1995).
17. Bodelier, P. L. E., Hahn, A. P., Arth, I. R & Frenzel, P. Effects of ammonium-based fertilisation on microbial processes involved in methane emission from soils planted with rice. Biogeochemistry (submitted).
18. Dunfield, P. F. & Knowles, R. Kinetics of methane oxidation by nitrate, nitrite, and ammonium in a humisol. Appl. Environ. Microbiol. 61, 3129-3135 (1995).
19. King, G. M. & Schnell, S. Effects of ammonium and non-ammonium salt additions on methane oxidation by Methylosinus trichosporium OB3b and maine forest soil. Appl. Environ. Microbiol. 64, 253-257 (1998).
20. 4 inhibition. Appl. Environ. Microbiol. 64, 4291-4298 (1998).
21. 4 emissions from a Louisiana, USA rice field. Plant Soil 136, 195-203 (1991).
22. Banik, A., Sen, M. & Sen, S. P. Effects of inorganic fertilizers and micronutrients on methane production from wetland rice (Oryza sativa L.). Biol. Fertil. Soil 21, 319-322 (1996).
23. Bodelier, P. L. E., Wijlhuizen, A. G., Blom, C. W. P. M. & Laanbroek, H. J. Effects of photoperiod on growth of and denitrification by Pseudomonas chlororaphis in the root zone of Glyceria maxima, studied in a gnotobiotic microcosm. Plant Soil 190, 91-103 (1997).
24. 4 oxidation in the rhizosphere of rice plants as determined by new methods of discrimination. Appl. Environ. Microbiol. 65, 1826-1833 (1999).
25. Strunk, O. & Ludwig, W. ARB: A Software Environment for Sequence Data (Technische Universität München, Munich, Germany, 1996); available at http://www.biol.chemie.tu-muenchen.de/pub/ARB.
26. Ludwig, W. et al. Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19, 554-568 (1998).
27. Roslev, P. & Iversen, N. Radioactive fingerprinting of microorganisms that oxidize atmospheric methane in different soils. Appl. Environ. Microbiol. 65, 4064-4070 (1999).