Computer analysis of potential stem structures of rRNA operons in various procaryote genomes

Gene

Volumn 259, Issue 1-2, 2000, Pages 217-222

  Saito, Rintaro ^a,b   Ozawa, Yousuke ^b   Kuzuno, Naoki ^b   Tomita, Masaru ^b  

^a RIKEN TSUKUBA INSTITUTE   (Japan)

^b KEIO UNIVERSITY   (Japan)

Author keywords

Free energy; Processing; Ribonuclease; RNase III

Indexed keywords

RIBONUCLEASE III; RIBOSOME RNA;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; COMPUTER ANALYSIS; ENERGY TRANSFER; ESCHERICHIA COLI; GENE STRUCTURE; GENE TARGETING; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PRIORITY JOURNAL; PROKARYOTE; RNA PROCESSING;

BACTERIA; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; GENOME, BACTERIAL; NUCLEIC ACID CONFORMATION; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 23S; RRNA OPERON; SEQUENCE ALIGNMENT; SPECIES SPECIFICITY; THERMODYNAMICS;

ARCHAEA; BACTERIA (MICROORGANISMS); PROKARYOTA;

EID: 0034707192     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(00)00429-7     Document Type: Article

References (13)

1. RNA processing in procaryotic cells
2. RimM and RbfA are essential for efficient processing of 16S rRNA in Escherichia coli
3. Separate pathways for excision and processing of 16S and 23S rRNA from the primary rRNA operon transcript from the hyperthermophilic archaebacterium Sulfolobus acidocaldarius: Similarities to eucaryotic rRNA processing
4. RNase G (CafA protein) and RNase E are both required for the 5′ maturation of 16S ribosomal RNA
5. Base-pairing of 23S rRNA ends is essential for ribosomal large subunit assembly
6. Structure and organization of rRNA operons in the region of the replication origin of the Bacillus subtilis chromosome
7. Analysis of base-pairing potentials between 16S rRNA and 5′UTR for translation initiation in various prokaryotes
8. Mechanism and regulation of bacterial ribosomal RNA processing
9. rRNA processing in Escherichia coli
10. Analysis of transcription and processing signals of the 16S-23S rRNA operon of Mycoplasma hyopneumoniae
11. Improved parameters for prediction of RNA structure
12. Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5′ end of 16S rRNA
13. Bacillus subtilis Rnase III gene: Cloning, function of the gene in Escherichia coli, and construction of Bacillus subtilis strains with altered rnc loci