Free energy requirement for domain movement of an enzyme

Journal of Biological Chemistry

Volumn 275, Issue 25, 2000, Pages 18939-18945

  Ishijima, Jun ^a   Nakai, Tadashi ^b   Kawaguchi, Shin Ichi ^a   Hirotsu, Ken ^b   Kuramitsu, Seiki ^a,c,d  

^a OSAKA UNIVERSITY   (Japan)

^b Osaka Prefecture University   (Japan)

^c RIKEN   (Japan)

^d RIKEN YOKOHAMA INSTITUTE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINOTRANSFERASE; ASPARTATE AMINOTRANSFERASE;

ARTICLE; CHEMICAL REACTION KINETICS; ENERGY METABOLISM; ENZYME ANALYSIS; ENZYME KINETICS; ENZYME SUBSTRATE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; X RAY CRYSTALLOGRAPHY;

ASPARTATE AMINOTRANSFERASES; BASE SEQUENCE; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; DNA PRIMERS; KINETICS; MODELS, MOLECULAR; PROTEIN CONFORMATION;

EID: 0034705542     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.275.25.18939     Document Type: Article

References (39)

1. Koshland, D. E., Jr. (1958) Proc. Natl. Acad. Sci. U. S. A. 44, 98-104
2. Pugmire, M. J., Cook, W. J., Jasanoff, A., Walter, M. R., and Ealick, S. E. (1998) J. Mol. Biol. 281, 285-299
3. Karplus, M., and McCammon, J. A. (1983) Annu. Rev. Biochem. 52, 263-300
4. Radmacher, M., Fritz, M., Hansma, H. G., and Hansma, P. K. (1994) Science 265, 1577-1579
5. Mehta, A. D., Rief, M., Spudich, J. A., Smith, D. A., and Simmons, R. M. (1999) Science 283, 1689-1695
6. Christen, P., and Metzler, D. E. (eds) (1985) Transaminase, Wiley & Sons, Inc., New York
7. Smith, D. L., Almo, S. C., Toney, M. D., and Ringe, D. (1989) Biochemistry 28, 8161-8167
8. Okamoto, A., Higuchi, T., Hirotsu, K., Kuramitsu, S., and Kagamiyama, H. (1994) J. Biochem. (Tokyo) 116, 95-107
9. Jäger, J., Moser, M., Sauder, U., and Jansonius, J. N. (1994) J. Mol. Biol. 239, 285-305
10. Kiick, D. M., and Cook, P. F. (1983) Biochemistry 22, 375-82
11. Kuramitsu, S., Hiromi, K., Hayashi, H., Morino, Y., and Kagamiyama, H. (1990) Biochemistry 29, 5469-5476
12. Kawaguchi, S., Nobe, Y., Yasuoka, J., Wakamiya, T., Kusumoto, S., and Kuramitsu, S. (1997) J. Biochem. (Tokyo) 122, 55-63
13. Kawaguchi, S., and Kuramitsu, S. (1998) J. Biol Chem. 273, 18353-18364
14. Ryu, K., and Dordick, J. S. (1992) Biochemistry 31, 2588-2598
15. Wangikar, P. P., Rich, J. O., Clark, D. S., and Dordick, J. S. (1995) Biochemistry 34, 12302-12310
16. Oue, S., Okamoto, A., Nakai, Y., Nakahira, M., Shibatani, T., Hayashi, H., and Kagamiyama, H. (1997) J. Biochem. (Tokyo) 121, 161-171
17. Dorovska, V. N., Varfolomeyev, S. D., Kazanakaya, N. F., Klyosov, A. A., and Martinek, K. (1972) FEBS Lett. 23, 122-124
18. Malashkevich, V. N., Onuffer, J. J., Kirsch, J. F., and Jansonius, J. N. (1995) Nat. Struct. Biol. 2, 548-553
19. Okamoto, A., Ishii, S., Hirotsu, K., and Kagamiyama, H. (1999) Biochemistry 38, 1176-1184
20. Otwinowski, Z. (1993) in CCP4 Study Weekend Data Collection and Processing (Sawyer, L., Isaacs, N., and Bailey, S., eds) pp. 56-62, SERC Daresbury Laboratory, Warrington, United Kingdom
21. Collaborative Computing Project 4 (1994) Acta Crystallogr. Sec. D 50, 760-763
22. Brunger, A. T. (1993) X-PLOR Version 3.1: A System for X-ray Crystallography and NMR, Yale University Press, New Haven, CT
23. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sec. A 47, 110-119
24. Birchmeier, W., Wilson, K. J., and Christen, P. (1973) J. Biol. Chem. 248, 1751-1759
25. Kamitori, S., Hirotsu, K., Higuchi, T., Kondo, K., Inoue, K., Kuramitsu, S., Kagamiyama, H., Higuchi, Y., Yasuoka, N., Kusunoki, M., and Matsuura, Y. (1987) J. Biochem. (Tokyo) 101, 813-816
26. Kuramitsu, S., Hamaguchi, K., Ogawa, T., and Ogawa, H. (1981) J. Biochem. (Tokyo) 90, 1033-1045
27. Miyahara, I., Hirotsu, K., Hayashi, H., and Kagamiyama, H. (1994) J. Biochem. (Tokyo) 116, 1001-1012
28. Kamitori, S., Okamoto, A., Hirotsu, K., Higuchi, T., Kuramitsu, S., Kagamiyama, H., Matsuura, Y., and Katsube, Y. (1990) J. Biochem. (Tokyo) 108, 175-184
29. Kasper, P., Sterk, M., Christen, P., and Gehring, H. (1996) Eur. J. Biochem. 240, 751-755
30. Takezawa, Y., Kim, D. S., Ogino, M., Sugimoto, Y., Kobayashi, T., Arata, T., and Wakabayashi, K. (1999) Biophys. J. 76, 1770-1783
31. Bernstein, B. E., Michels, P. A., and Hol, W. G. (1997) Nature 385, 275-278
32. Xu, W., Harrison, S. C., and Eck, M. J. (1997) Nature 385, 595-602
33. Remington, S., Wiegand, G., and Huber, R. (1982) J. Mol. Biol. 158, 111-152
34. Kuramitsu, S., Okuno, S., Ogawa, T., Ogawa, H., and Kagamiyama, H. (1985) J. Biochem. (Tokyo) 97, 1259-1262
35. Kuramitsu, S., Inoue, K., Ogawa, T., Ogawa, H., and Kagamiyama, H. (1985) Biochem. Biophys. Res. Commun. 133, 134-139
36. Hayashi, H., Inoue, K., Nagata, T., Kuramitau, S., and Kagamiyama, H. (1993) Biochemistry 32, 12229-12239
37. Ko, T. P., Wu, S. P., Yang, W. Z., Tsai, H., and Yuan, H. S. (1999) Acta Crystallogr. Sec. D 55, 1474-1477
38. Pfister, K., Sandmeier, E., Berchtold, W., and Christen, P. (1985) J. Biol. Chem. 260, 11414-11421
39. Rhee, S., Silva, M. M., Hyde, C. C., Rogers, P. H., Metzler, C. M., Metzler, D. E., and Arnone, A. (1997) J. Biol. Chem. 272, 17293-17302