Refinement and comparisons of the crystal structures of pig cytosolic aspartate aminotransferase and its complex with 2-methylaspartate

Journal of Biological Chemistry

Volumn 272, Issue 28, 1997, Pages 17293-17302

  Rhee, Sangkee ^a,c   Silva, Mercedes M ^b   Hyde, C Craig ^a,d   Rogers, Paul H ^a   Metzler, Carol M ^a   Metzler, David E ^a   Arnone, Arthur ^a  

^a UNIVERSITY OF IOWA   (United States)

^b IOWA STATE UNIVERSITY   (United States)

^c NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

^d NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ASPARTATE AMINOTRANSFERASE; ASPARTIC ACID DERIVATIVE;

ARTICLE; CRYSTAL STRUCTURE; ENZYME CONFORMATION; ENZYME SUBSTRATE COMPLEX; ENZYME SUBUNIT; PRIORITY JOURNAL; PROTEIN DOMAIN; STEREOCHEMISTRY; SWINE;

ACETIC ACID; ANIMALS; ASPARTATE AMINOTRANSFERASES; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; CYTOSOL; FORMIC ACIDS; MACROMOLECULAR SUBSTANCES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; N-METHYLASPARTATE; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SWINE;

SUS SCROFA;

EID: 0030845064     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.272.28.17293     Document Type: Article

References (57)

1. Koshland, D. E., Jr. (1958) Proc. Natl. Acad. Sci. U. S. A. 44, 98-104
2. Huber, R. (1988) Angew. Chem. Int. Ed. Engl. 27, 79-88
3. Janin, J., and Wodak, S. J. (1983) Prog. Biophys. Mol. Biol. 42, 21-78
4. Bennett, W. S., and Huber, R. (1984) Crit. Rev. Biochem. 15, 291-384
5. Bennett, W. S., Jr., and Steitz, T. A. (1980) J. Mol. Biol. 140, 211-230
6. Eklund, H., Samama, J.-P., Wallén, L., Brändén, C.-I., Åkeson Å, and Jones, T. A. (1981) J. Mol. Biol. 146, 561-587
7. Remington, S., Wiegand, G., and Huber, R. (1982) J. Mol. Biol. 158, 111-152
8. Dawson, A. G. (1979) Trends Biochem. Sci. 4, 171-176
9. Braunstein, A. E. (1960) Enzymes 2, 113-184
10. Braunstein, A. E. (1973) Enzymes 9, 379-481
11. Ivanov, V. I., and Karpeisky, M. Y. (1969) Adv. Enzymol. 32, 21-53
12. Christen, P., and Metzler, D. E. (1985) Transaminases, John Wiley and Sons, New York
13. Jansonius, J. N., and Vincent, M. G. (1987) Biological Macromolecules and Assemblies (Jurnak, F. A., and McPherson, A., eds) pp. 187-285, John Wiley and Sons, Inc., New York
14. Birchmeier, W., Wilson, K. J., and Christen, P. (1973) J. Biol. Chem. 248, 1751-1759
15. Gehring, H., and Christen, P. (1978) J. Biol. Chem. 253, 3158-3163
16. McPhalen, C. A., Vincent, M. G., Picot, D., Jansonius, J. N., Lesk, A. M., and Chothia, C. (1992) J. Mol. Biol. 227, 197-213
17. Borisov, V. V., Borisova, S. N., Kachalova, G. S., Sosfenov, N. I., and Vainshtein, B. K. (1985) Transaminases (Christen, P., and Metzler, D. E., eds) pp. 155-164, John Wiley and Sons, Inc., New York
18. Malashkevich, V. N., Strokopytov, B. V., Borisov, V. V., Dauter, Z. Wilson, K. S., and Torchinsky, Y. M. (1995) J. Mol. Biol. 247, 111-124
19. Kamitori, S., Okamoto, A., Hirotsu, K., Higuchi, T., Kuramitsu, S., Kagamiyama, H., Matsuura, Y., and Katsube, Y. (1990) J. Biochem. (Tokyo) 108, 175-184
20. Jäger, J., Moser, M., Sauder, U., and Jansonius, J. N. (1994) J. Mol. Biol. 209, 499-501
21. Arnone, A., Christen, P., Jansonius, J. N., and Metzler, D. E. (1985) Transaminases (Christen, P., and Metzler, D. E., eds) pp. 326-362, John Wiley and Sons, Inc., New York
22. Boettcher, B., and Martinez-Carrion, M. (1976) Biochemistry 15, 5657-5664
23. Schlegel, H., Zaoralek, P. E., and Christen, P. (1977) J. Biol. Chem. 252, 5835-5838
24. Yang, B. I., and Metzler, D. E. (1979) Methods Enzymol. 62, 528-551
25. Arnone, A., Rogers, P. H., Schmidt, J., Han, C., Harris, C. M., and Metzler, D. E. (1977) J. Mol. Biol. 112, 509-513
26. Metzler, C. M., Rogers, P. H., Arnone, A., Martin, D. S., and Metzler, D. E. (1979) Methods Enzymol. 62, 551-558
27. Rhee, S., Rogers, P. H., Arnone, A., Metzler, C. M., and Metzler, D. E. (1992) American Crystallographic Association 1992 Annual Meeting, Series 2, Vol. 20, p. 98 (Abstr.), American Crystallographic Association, Buffalo, NY
28. Rhee, S. (1994) High Resolution X-ray Diffraction Studies of Cytosolic Aspartate Aminotransferase, Ph. D. thesis, University of Iowa
29. Howard, A. J., Nielsen, C., and Xuong, N. H. (1985) Methods Enzymol. 114, 452-472
30. Hendrickson, W. A. (1985) Methods Enzymol. 115, 252-270
31. Sheriff, S. (1987) J. Appl. Crystallogr. 20, 53-55
32. Hyde, C. C., Rogers, P. H., Briley, P. D., Arnone, A., Metzler, C. M., and Metzler, D. E. (1984) Peptide Protein Rev. 4, 47-113
33. Petsko, G. A., and Ringe, D. (1984) Annu. Rev. Biophys. Bioeng. 13, 331-371
34. Kabsch, W., and Sander, C. (1983) Biopolymers 22, 2577-2637
35. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
36. Herzberg, O., and Moult, J. (1991) Proteins 11, 223-229
37. Okamoto, A., Higuchi, T., Hirotsu, K., Kuramitsu, S., and Kagamiyama, H. (1994) J. Biochem. (Tokyo) 116, 95-107
38. Mehta, P. K., Hale, T. I., and Christen, P. (1989) Eur. J. Biochem. 186, 249-253
39. Gerstein, M., and Chothia, C. (1991) J. Mol. Biol. 220, 133-149
40. Lesk, A. M. (1991) Protein Architecture: A Practical Guide, IRL Press, Oxford
41. Kabsch, W. (1976) Acta Crystallogr. Sect. A 32, 922-923
42. Yuen, P. S., and Nyburg, S. C. (1979) J. Appl. Crystallogr. 12, 258
43. Kirsch, J. F., Eichele, G., Ford, G. C., Vincent, M. G., and Jansonius, J. N. (1984) J. Mol. Biol. 174, 497-525
44. Pfister, K., Sandmeier, E., Berchtold, W., and Christen, P. (1985) J. Biol. Chem. 260, 11414-11421
45. Gerstein, M., Schulz, G., and Chothia, C. (1993) J. Mol. Biol. 229, 494-501
46. Gerstein, M., Lesk, A. M., and Chothia, C. (1994) Biochemistry 33, 6739-6749
47. McPhalen, C. A., Vincent, M. G., and Jansonius, J. N. (1992) J. Mol. Biol. 225, 495-517
48. Pan, Q.-W., Tanase, S., Fukumoto, Y., Nagashima, F., Rhee, S., Rogers, P. H., Arnone, A., and Morino, Y. (1993) J Biol. Chem. 268, 24758-24765
49. 6 and PQQ (Marino, G., Sannia, G., and Bossa, F., eds) pp. 49-53, Birkhauser Verlag, Basel
50. Smith, D. L., Almo, S. C., Toney, M. D., and Ringe, D. (1989) Biochemistry 28, 8161-8167
51. 6 Catalysis (Evangelopoulos, A. E., ed), pp. 171-193, Alan R. Liss, New York
52. Arnone, A., Rogers, P. H., Hyde, C. C., Briley, P. D., Metzler, C. M., and Metzler, D. E. (1985) Transaminases (Christen, P., and Metzler, D. E., eds) pp. 138-155, John Wiley and Sons, Inc., New York
53. Silva, M. M., Rogers, P. H., Hyde, C. C., Borgstahl, G. E. O., and Arnone, A. (1990) American Cristallographic Association 1990 Annual Meeting, Series 2, Vol. 18. p 69 (Abstr.), American Crystallographic Association, Buffalo, NY
54. Taylor, T. E., Metzler, D. E., and Arnone, A. (1990) Ann. N. Y. Acad. Sci. 585, 58-67
55. Chothia, C. (1974) Nature 248, 338-339
56. Dill, K. A. (1990) Biochemistry 29, 7133-7155
57. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950