Sequencing and characterization of A-2 plaque virus: A new member of the Picornaviridae family

Virology

Volumn 272, Issue 1, 2000, Pages 168-176

  Liu, Zhengwen ^a   Donahue, Robert E ^a   Young, Neal S ^a   Brown, Kevin E ^a  

^a NATIONAL HEART LUNG AND BLOOD INSTITUTE   (United States)

Author keywords

A2 virus; Enterovirus; Hepatitis; Picornavirus

Indexed keywords

VIRUS PROTEIN; VIRUS RNA;

A2 PLAQUE VIRUS; ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; CLINICAL ARTICLE; CONTROLLED STUDY; HEPATITIS; HUMAN; HUMAN TISSUE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PICORNAVIRUS; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS GENOME; VIRUS PATHOGENESIS;

A-2 PLAQUE VIRUS; ANIMALIA; COXSACKIEVIRUS; COXSACKIEVIRUS B; ENTEROVIRUS; PICORNAVIRIDAE; PRIMATES; RNA VIRUSES;

EID: 0034691203     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.2000.0355     Document Type: Article

References (45)

1. Ali S. A., Kubik B., Gulle H., Eibl M. M., Steinkasserer A. Rapid isolation of HCV RNA from Catrimox-lysed whole blood using QIAamp spin columns. Biotechniques. 25:1998;975-978.
2. Brown K. E., Tisdale J., Barrett J., Dunbar C. E., Young N. S. Hepatitis-associated aplastic anemia. N. Engl. J. Med. 336:1997a;1059-1064.
3. Brown K. E., Wong S., Young N. S. Prevalence of GBV-C/HGV, a novel "hepatitis" virus, in patients with aplastic anaemia. Br. J. Haematol. 97:1997b;492-496.
4. Bukh J., Kim J. P., Govindarajan S., Apgar C. L., Foung S. K. H., Wages J. Jr., Yun A. J., Shapiro M., Emerson S. U., Purcell R. H. Experimental infection of Chimpanzees with hepatitis G virus and genetic analysis of the virus. J. Infect. Dis. 177:1998;855-862.
5. Clewley J. P. PCR and sequencing to type enteroviruses and rhinoviruses. Becker Y., Darai G. PCR: Protocols for Diagnosis of Human and Animal Virus Diseases. 1995;173-181 Springer-Verlag, New York.
6. Cohen J. I., Ticehurst J. R., Purcell R. H., Buckler-White A., Baroudy B. M. Complete nucleotide sequence of wild-type hepatitis A virus: Comparison with different strains of hepatitis A virus and other picornaviruses. J. Virol. 61:1987;50-59.
7. Conrad M. E. Infectious hepatitis: An unresolved military problem. Military Med. 130:1965;594-600.
8. Couch R. B. Rhinoviruses. Fields B. N., Knipe D. M., Howley P. M. Fields Virology. 1996;713-734 Lippincott-Raven, Philadelphia.
9. Doherty M., Todd D., McFerran N., Hoey E. M. Sequence analysis of a porcine enterovirus serotype 1 isolate: Relationships with other picornaviruses. J. Gen. Virol. 80:1999;1929-1941.
10. Dorner A. J., Dorner L. F., Larsen G. R., Wimmer E., Anderson C. W. Identification of the initiation site of poliovirus polyprotein synthesis. J. Virol. 42:1982;1017-1028.
11. Emini E. A., Elzinga M., Wimmer E. Carboxy-terminal analysis of poliovirus proteins: Termination of poliovirus RNA translation and location of unique poliovirus polyprotein cleavage sites. J. Virol. 42:1982;194-199.
12. Forss S., Strebel K., Beck E., Schaller H. Nucleotide sequence and genome organization of foot-and-mouth disease virus. Nucleic Acids Res. 12:1984;6587-6601.
13. Garson J. A., Whitby K., Watkins P., Morgan A. J. Lack of susceptibility of the cottontop tamarin to hepatitis C infection. J. Med. Virol. 52:1997;286-288.
14. Hsiung G. D. Virus assay, neutralization test, and antiviral assay. Hsiung G. D., Fong C. K. Y., Landry M. L. Hsiung's diagnostic virology: As illustrated by light and electron microscopy. 1994;46-55 Yale University Press, New Haven.
15. Hughes P. J., North C., Jellis C. H., Minor P. D., Stanway G. The nucleotide sequence of human rhinovirus 1B: Molecular relationships within the rhinovirus genus. J. Gen. Virol. 69:1988;49-58.
16. Hyypiä T., Horsnell C., Maaronen M., Khan M., Kalkkinen N., Auvinen P., Kinnunen L., Stanway G. A distinct picornavirus group identified by sequence analysis. Proc. Natl. Acad. Sci. USA. 89:1992;8847-8851.
17. Kitamura N., Adler C. J., Rothberg P. G., Martinko J., Nathenson S. G., Wimmer E. The genome-linked protein of picornaviruses. VII. Genetic mapping of poliovirus VPg by protein and RNA sequence studies. Cell. 21:1980;295-302.
18. Kitamura N., Semler B. L., Rothberg P. G., Larsen G. R., Adler C. J., Dorner A. J., Emini E. A., Hanecak R., Lee J. J., van der Werf S., Anderson C. W., Wimmer E. Primary structure, gene organization and polypeptide expression of poliovirus RNA. Nature. 291:1981;547-553.
19. Kitamura N., Wimmer E. Sequence of 1060 3′-terminal nucleotides of poliovirus RNA as determined by a modification of the dideoxynucleotide method. Proc. Natl. Acad. Sci. USA. 77:1980;3196-3200.
20. Matsumoto A., Yeo A. E., Shih J. W., Tanaka E., Kiyosawa K., Alter H. J. Transfusion-associated TT virus infection and its relationship to liver disease. Hepatology. 30:1999;283-288.
21. Mayo M. A., Pringle C. R. Virus taxonomy - 1997. J. Gen. Virol. 79:1998;649-657.
22. Mertens T. H., Pika U., Eggers H. J. Cross antigenicity among enteroviruses as revealed by immunoblot technique. Virology. 129:1983;431-442.
23. Minor P. D. Growth, assay and purification of picornaviruses. Mahy B. W. J. Virology: A Practical Approach. 1985;25-41 IRL Press Limited, Oxford.
24. Mirmomeni M. H., Hughes P. J., Stanway G. An RNA tertiary structure in the 3′ untranslated region of enteroviruses is necessary for efficient replication. J. Virol. 71:1997;2363-2370.
25. Muir P., Kämmerer U., Korn K., Mulders M. N., Poyry T., Weissbrich B., Kandolf R., Cleator G. M., van Loon A. M. Molecular typing of enteroviruses: Current status and future requirements. Clin. Microbiol. Rev. 11:1998;202-227.
26. Nelsen-Salz B., Zimmermann A., Wickert S., Arnold G., Botta A., Eggers H. J., Kruppenbacher J. P. Analysis of sequence and pathogenic properties of two variants of encephalomyocarditis virus differing in a single amino acid in VP1. Virus Res. 41:1996;109-122.
27. Page R. D. M. TREEVIEW: An application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:1996;357-358.
28. Poleshchuk V. F., Balaian M. S., Andzhaparidze A. G., Sobol' A. V., Dokin V. P., Guliaeva T. V., Titova I. P. The modelling of hepatitis A and of enterally transmitted non-A, non-B hepatitis (hepatitis E) in Saguinus mystax tamarins. Russian Prog. Virol. 35:1990;379-382.
29. Poleshchuk V. F., Drozdov S. G., Balaian M. S., Titova I. P., Sobol' A. V., Guliaeva T. V., Dokin V. P. The biochemical indices of the blood serum in experimental hepatitis A in tamarins. Russian Prog. Virol. 37:1992;27-31.
30. Pringle C. R. Virus taxonomy - 1999. Arch. Virol. 144:1999;421-429.
31. Pulli T., Koskimies P., Hyypiä T. Molecular comparison of coxsackie A virus serotypes. Virology. 212:1995;30-38.
32. Pulli T., Lankinen H., Roivainen M., Hyypiä T. Antigenic sites of coxsackievirus A9. Virology. 240:1998;202-212.
33. Racaniello V. R., Baltimore D. Molecular cloning of poliovirus cDNA and determination of the complete nucleotide sequence of the viral genome. Proc. Natl. Acad. Sci. USA. 78:1981;4887-4891.
34. Rochling F. A., Jones W. F., Chau K., DuCharme L., Mimms L. T., Moore B., Scheffel J., Cuthbert J. A., Thiele D. L. Acute sporadic non-A, non-B, non-C, non-D, non-E hepatitis. Hepatology. 25:1997;478-483.
35. Rohll J. B., Moon D. H., Evans D. J., Almond J. W. The 3′ untranslated region of picornavirus RNA: Features required for efficient genome replication. J. Virol. 69:1995;7835-7844.
36. Rueckert R. R. Picornaviridae: The viruses and their replication. Fields B. N., Knipe D. M., Howley P. M. Fields Virology. 1996;609-654 Lippincott-Raven, Philadelphia.
37. Ryan M. D., Flint M. Virus-encoded proteinases of the picornavirus super-group. J. Gen. Virol. 78:1997;699-723.
38. Shaw, E. D. 1978, Method of detecting hepatitis B core antigen, and antibody. 618644 (US Patent No.4100267).
39. Shaw, E. D., and Banks, I. S.1966. Plaque assay, and electron microscopy of selected viruses associated with infectious hepatitis of man. IX International Congress for Microbiology, Moscow, USSR, 395-395.
40. Shaw E. D., McKee A. P., Rancourt M., Hollenbeck L. Induction of hepatitis B antibody in experimental animals by immunization with A-2 plaque virus. J. Virol. 12:1973;1598-1607.
41. Thompson J. D., Higgins D. G., Gibson T. J. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
42. Todd S., Nguyen J. H., Semler B. L. RNA-protein interactions directed by the 3′ end of human rhinovirus genomic RNA. J. Virol. 69:1995;3605-3614.
43. Uwatoko K., Sunairi M., Yamamoto A., Nakajima M., Yamaura K. Rapid and efficient method to eliminate substances inhibitory to the polymerase chain reaction from animal fecal samples. Vet. Microbiol. 52:1996;73-79.
44. Yamashita T., Sakae K., Tsuzuki H., Suzuki Y., Ishikawa N., Takeda N., Miyamura T., Yamazaki S. Complete nucleotide sequence and genetic organization of Aichi virus, a distinct member of the Picornaviridae associated with acute gastroenteritis in humans. J. Virol. 72:1998;8408-8412.
45. Zimmermann A., Nelsen-Salz B., Kruppenbacher J. P., Eggers H. J. The complete nucleotide sequence and construction of an infectious cDNA clone of a highly virulent encephalomyocarditis virus. Virology. 203:1994;366-372.