A satellite DNA containing CENP-B box-like motifs is present in the Antarctic scallop Adamussium colbecki

Gene

Volumn 247, Issue 1-2, 2000, Pages 175-180

  Canapa, Adriana ^a   Barucca, Marco ^a   Cerioni, Paola Nisi ^a   Olmo, Ettore ^a  

^a UNIVERSITÀ POLITECNICA DELLE MARCHE   (Italy)

Author keywords

BglII repeated DNA; CDEIII; CENP B box; Pectinidae

Indexed keywords

REPETITIVE DNA; SATELLITE DNA;

ANTARCTICA; ARTICLE; EVOLUTION; MUSSEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SOUTHERN BLOTTING; SPECIES DIFFERENCE;

ANIMALS; ANTARCTIC REGIONS; AUTOANTIGENS; BASE SEQUENCE; BINDING SITES; BLOTTING, SOUTHERN; CENTROMERE PROTEIN B; CHROMOSOMAL PROTEINS, NON-HISTONE; DNA; DNA, SATELLITE; DNA-BINDING PROTEINS; MOLECULAR SEQUENCE DATA; MOLLUSCA; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

ADAMUSSIUM COLBECKI; INVERTEBRATA; MAMMALIA; PECTINIDAE;

EID: 0034681991     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(00)00101-3     Document Type: Article

References (35)

1. Bachmann L., Schibel J.M., Raab M., Sperlich D. Satellite DNA as a taxonomic marker. Bioc. Syst. Ec. 21:1993;3-11.
2. Brukner I., Sanchez R., Suck D., Pongor S. Sequence-dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides. EMBO J. 14:1995;1812-1818.
3. Burkin D.J., Jones C., Burkin H.R., McGrew J.A., Broad T.E. Sheep CENP-B and CENP-C genes show a high level of sequence similarity and conserved synteny with their human homologs. Cytogenet. Cell Genet. 74:1996;86-89.
4. Capriglione T., De Santo M.G., Odierna G., Olmo E. An alphoid-like satellite DNA sequence is present in the genome of a lacertid lizard. J. Mol. Evol. 46:1998;240-244.
5. Charlesworth B., Sniegowski P., Stephan W. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature. 371:1994;215-220.
6. Clabby C., Goswami U., Flavin F., Wilkins N.P., Houghton J.A., Powell R. Cloning characterization and chromosomal location of a satellite DNA from the Pacific oyster, Crassostrea gigas. Gene. 168:1996;205-209.
7. Clarke L., Carbon J. The structure and function of yeast centromeres. Annu. Rev. Genet. 19:1985;29-55.
8. Cooke C.A., Bernat R.L., Earnshaw W.C. CENP-B: a major human centromere protein located beneath the kinetecore. J. Cell Biol. 110:1990;1475-1488.
9. Fitzgerald D.J., Dryden G.L., Bronson E.C., Williams J.S., Anderson J.N. Conserved patterns of bending in satellite and nucleosome positioning DNA. J. Biol. Chem. 269:1994;21303-21314.
10. Gabrielian A., Pongor S. Correlation of intrinsic DNA curvature with DNA property periodicity. FEBS Lett. 393:1996;65-68.
11. Gabrielian A., Vlahovicek K., Pongor S. Distribution of sequence-dependent curvature in genomic DNA sequences. FEBS Lett. 406:1997;69-74.
12. Grady D.L., Ratliff R.L., Robinson D.L., McCanlies E.C., Meyne J., Moyzis R.K. Highly conserved repetitive DNA sequences are present at human centromeres. Proc. Natl. Acad. Sci. USA. 89:1992;1695-1699.
13. Grellet F., Delcasso D., Panabieres F., Delsey M. Organization and evolution of a higher plant alphoid-like satellite DNA sequence. J. Mol. Biol. 187:1986;495-507.
14. Haaf T., Warburton P.E., Willard H.F. Integration of human α-satellite into simian chromosomes: centromere protein binding and disruption of normal chromosome segregation. Cell. 70:1992;681-696.
15. Haaf T., Mater A.G., Wienberg J., Ward D.C. Presence and abundance of CENP-B box sequences in great ape subsets of primate-specific α-satellite DNA. J. Mol. Evol. 41:1995;487-491.
16. Hertlein L.G. Pectinidae. Moore R.C. Treatise of Invertebrate Paleontology. 1969;349-373 Geological Society of America and University of Kansas Press, Lawrence, KS.
17. Jeffreys A.J., Flavell R.A. A physical map of the DNA region flanking the rabbit β-globin gene. Cell. 12:1977;429-439.
18. Kipling D., Mitchell A.R., Masumoto H., Wilson H.E., Nicol L., Cooke H.J. CENP-B binds a novel centromeric sequence in the Asian mouse Mus caroli. Mol. Cell. Biol. 15:1995;4009-4020.
19. Kipling D., Warburton P.E. Centromeres, CENP-B and Tigger too. Trends Genet. 13:1997;141-144.
20. Lopez C.C., Edstrom J. Interspersed centromeric element with a CENP-B box-like motif in Chironomus pallidivittatus. Nucleic Acids Res. 26:1998;4168-4172.
21. McLean K.W., Whiteley A.H. Characteristics of DNA from the oyster, Crassostrea gigas. Biochim. Biophys. Acta. 335:1973;35-41.
22. Masumoto H., Sugimoto K., Okazaki T. Alphoid satellite DNA is tightly associated with centromere antigens in human chromosomes throughout the cell cycle. Exp. Cell Res. 181:1989;181-196.
23. Muro Y., Masumoto H., Yoda K., Nozaki N., Ohashi M., Okazaki T. Centromere protein B assembles human centromeric alpha-satellite DNA at the 17-bp sequence, CENP-B box. J. Cell Biol. 116:1992;585-596.
24. Passamonti M., Mantovani B., Scali V. Struttura genetica e rapporti filetici di alcune specie di Tapes e Paphia (Molluschi, Bivalvi). Atti del Convegno congiunto A.G.I. 26-30 September 1994, Montesilvano (PE). 1994;484.
25. Plohl M., Cornudella L. Characterization of interrelated sequence motifs in four satellite DNAs and their distribution in the genome of the mollusc Donax trunculus. J. Mol. Evol. 44:1997;189-198.
26. Radic M.Z., Lundgren K., Hamkalo B.A. Curvature of mouse satellite DNA and condensation of heterochromatin. Cell. 50:1987;1101-1108.
27. Ragghianti M., Guerrini F., Bucci S., Mancino G., Hotz H., Uzzell T., Guex G.D. Molecular characterization of a centromeric satellite DNA in the hemiclonal hybrid frog Rana esculenta and its parental species. Chromosome Res. 3:1995;497-506.
28. Rombouts A. Guidebook to Pecten Shells. 1991;1-157 Universal Book Service, Dr W. Backhuys, Oegstgeest.
29. Ruiz-Lara S., Prats E., Sainz J., Cornudella L. Cloning and characterization of a highly conserved satellite DNA from the mollusc Mytilus edulis. Gene. 117:1992;237-242.
30. Sugimoto K., Furukawa K., Kusumi K., Himeno M. The distribution of binding sites for centromere protein B (CENP-B) is partly conserved among diverged higher order repeating units of human chromosome 6-specific alphoid DNA. Cromosome Res. 5:1997;395-405.
31. Sullivan K.F., Glass C.A. CENP-B is a highly conserved mammalian centromere protein with homology to the helix-loop-helix family of proteins. Chromosoma. 100:1991;360-370.
32. Tyler-Smith C., Oakey R.J., Larin Z., Fisher R.B., Crocker M., Affara N.A., Ferguson-Smith M.A., Muenke M., Zuffardi O., Jobling M.A. Localization of DNA sequences required for human centromere function through an analysis of rearranged Y chromosomes. Nat. Genet. 5:1993;368-375.
33. Wagner H.P. Review of the European Pectinidae. Vita marina. 41:1994;3-48.
34. Waller T.R. The ctenolium of scallop shells: functional morphology and evolution of a key family-level character in the Pectinacea (Mollusca: Bivalvia). Malacologia. 25:1984;203-219.
35. Weide R., Hontelez J., van Kammen A., Koornneef M., Zabel P. Paracentromeric sequences on tomato chromosome 6 show homology to human satellite III and to the mammalian CENP-B binding box. Mol. Gen. Genet. 259:1998;190-197.