Reverse genetics in zebrafish

Physiological Genomics

Volumn 2000, Issue 2, 2000, Pages 37-48

  Lekven, Arne C ^a   Helde, Kathryn Ann ^a   Thorpe, Christopher J ^a   Rooke, Rebecca ^a   Moon, Randall T ^a  

^a UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

Author keywords

Ethylnitrosourea; Functional genomics; Gamma rays; Mutagenesis; Trimethylpsoralen

Indexed keywords

DANIO RERIO; VERTEBRATA;

ANIMAL; BIOLOGICAL MODEL; BLASTOCYST; CHROMOSOME DELETION; GENE DELETION; GENE TARGETING; GENETIC COMPLEMENTATION; GENETIC PROCEDURES; GENETIC SCREENING; GENETICS; HETERODUPLEX ANALYSIS; METHODOLOGY; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRENATAL DEVELOPMENT; RADIATION EXPOSURE; REVIEW; SITE DIRECTED MUTAGENESIS; ZEBRA FISH;

ANIMALS; BLASTOCYST; CHROMOSOME DELETION; DNA MUTATIONAL ANALYSIS; GENE TARGETING; GENETIC COMPLEMENTATION TEST; GENETIC SCREENING; GENETIC TECHNIQUES; HETERODUPLEX ANALYSIS; MODELS, BIOLOGICAL; MUTAGENESIS, SITE-DIRECTED; POLYMERASE CHAIN REACTION; SEQUENCE DELETION; ZEBRAFISH;

EID: 0034642772     PISSN: 15312267     EISSN: None     Source Type: Journal    
DOI: 10.1152/physiolgenomics.2000.2.2.37     Document Type: Review

References (47)

1. Alexander, J., D. Y. Stainier, and D. Yelon. Screening mosaic F1 females for mutations affecting zebrafish heart induction and patterning. Dev. Genet. 22: 288-299, 1998.
2. Amsterdam, A., C. Yoon, M. Allende, T. Becker, K. Kawakami, S. Burgess, N. Gaiano, and N. Hopkins. Retrovirus-mediated insertional mutagenesis in zebrafish and identification of a molecular marker for embryonic germ cells. Cold Spring Harb. Symp. Quant. Biol. 62: 437-450, 1997.
3. Amsterdam, A., and N. Hopkins. Retrovirus-mediated insertional mutagenesis in zebrafish. Methods Cell Biol. 60: 87-98, 1999.
4. Ando, H., and M. Mishina. Efficient mutagenesis of zebrafish by a DNA cross-linking agent. Neurosci. Lett. 244: 81-84, 1998.
5. Appel, B., A. Fritz, M. Westerfield, D. J. Grunwald, J. S. Eisen, and B. B. Riley. Delta-mediated specification of midline cell fates in zebrafish embryos. Curr. Biol. 9: 247-256, 1999.
6. Braun, T., G. Buschhausen-Denker, E. Bober, E. Tannich, and H. H. Arnold. A novel human muscle factor related to but distinct from MyoD1 induces myogenic conversion in 10T1/2 fibroblasts. EMBO J. 8: 701-709, 1989.
7. Braun, T., M. A. Rudnicki, H.-H. Arnold, and R. Jaenisch. Targeted inactivation of the muscle regulatory gene myf-5 results in abnormal rib development and perinatal death. Cell 71: 369-382, 1992.
8. Chakrabarti, S., G. Streisinger, F. Singer, and C. Walker. Frequency of gamma-ray induced specific locus and recessive lethal mutations in mature germ cells of the zebrafish, Brachydanio rerio. Genetics 103: 109-124, 1983.
9. Corley-Smith, G. E., C. J. Lim, and B. P. Brandhorst. Production of androgenetic zebrafish (Danio rerio). Genetics 142:1265-1276, 1996.
10. Davis, R., H. Weintraub, H., and A. Lassar. Expression of a single transfected cDNA converts fibroblasts to myoblasts. Cell 51: 987-1000, 1987.
11. de Graaf, M., D. Zivkovic, and J. Joore. Hormone-inducible expression of secreted factors in zebrafish embryos. Dev. Growth Differ. 40: 577-582, 1998.
12. De Stasio, E., C. Lephoto, L.Azuma, C. Holst, D. Stanislaus, and J. Uttam. Characterization of revertants of unc-93(e1500) in Caenorhabditis elegans induced by N-ethyl-N-nitrosourea. Genetics 147:597-608, 1997.
13. Driever, W., L. Solnica-Krezel, A. F. Schier, S. C. Neuhauss, J. Malicki, D. L. Stemple, D. Y. Stainier, F. Zwartkruis, S. Abdelilah, Z. Rangini, J. Belak, and C. Boggs. A genetic screen for mutations affecting embryogenesis in zebrafish. Development 123: 37-46, 1996.
14. Fritz, A., M. Rozowski, C. Walker, and M. Westerfield. Identification of selected gamma-ray induced deficiencies in zebrafish using multiplex polymerase chain reaction. Genetics 144: 1735-1745, 1996.
15. Gates, M. A., L. Kim, E. S. Egan, T. Cardozo, H. I. Sirotkin, S. T. Dougan, D. Lashkari, R. Abagyan, A. F. Schier, and W. S. Talbot. A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences. Genome Res. 9: 334-347, 1999.
16. Guo, S., S. W. Wilson, S. Cooke, A. B. Chitnis, W. Driever, and A. Rosenthal. Mutations in the zebrafish unmask shared regulatory pathways controlling the development of catecholaminergic neurons. Dev. Biol. 208: 473-487, 1999.
17. Hacia J. G. Resequencing and mutational analysis using oligonucleotide microarrays. Nat. Genet. 21, Suppl. 1: 42-47, 1999.
18. Haffter, P., M. Granato, M. Brand, M. C. Mullins, M. Hammerschmidt, D. A. Kane, J. Odenthal, F. J. van-Eeden, Y. J. Jiang, C. P. Heisenberg, R. N. Kelsh, M. Furutani-Seiki, E. Vogelsang, D. Beuchle, U. Schach, C. Fabian, and C. Nüsslein-Volhard. The identification of genes with unique and essential functions in the development of the zebrafish. Development 123:1-36, 1996.
19. Higashijima, S., H. Okamoto, N. Ueno, Y. Hotta, and G. Eguchi. High-frequency generation of transgenic zebrafish which reliably express GFP in whole muscles or the whole body by using promoters of zebrafish origin. Dev. Biol. 192: 289-299, 1997.
20. Ho, R. K., and C. B. Kimmel. Commitment of cell fate in the early zebrafish embryo. Science 261: 109-111, 1993.
21. Honigsmann, H. Psoralen photochemotherapy: mechanisms, drugs, toxicity. Curr. Probl. Dermatol. 15: 52-66, 1986.
22. Ivies, Z., P. B. Hackett, R. H. Plasterk, and Z. Izsvak. Molecular reconstruction of Sleeping Beauty, a Tc1-like transposon from fish, and its transposition in human cells. Cell 91: 501-510, 1997.
23. Jansen, G., E. Hazendonk, K. L. Thijssen, and R. H. Plasterk. Reverse genetics by chemical mutagenesis in Caenorhabditis elegans. Nat. Genet. 17: 119-121, 1997.
24. Justice, M. J., B. Zheng, R. P. Woychik, and A. Bradley. Using targeted large deletions and high-efficiency N-ethyl-N-nitrosourea mutagenesis for functional analyses of the mammalian genome. Methods 13: 423-436, 1997.
25. Kablar, B., K. Krastel, C. Ying, A. Asakura, S. J. Tapscott, and M. A. Rudnicki. MyoD and Myf-5 differentially regulate the development of limb versus trunk skeletal muscle. Development 124: 4729-4738, 1997.
26. Lam, W. L., T. S. Lee, and W. Gilbert. Active transposition in zebrafish. Proc. Natl. Acad. Sci. USA 93: 10870-10875, 1996.
27. Long, Q., A. Meng, H. Wang, J. R. Jessen, M. J. Farrell, and S. Lin. GATA-1 expression pattern can be recapitulated in living transgenic zebrafish using GFP reporter gene. Development 124: 4105-4111, 1997.
28. Melancon, E., D. W. Liu, M. Westerfield, and J. S. Eisen. Pathfinding by identified zebrafish motoneurons in the absence of muscle pioneers. J. Neurosci. 17: 7796-7804, 1997.
29. Mullins, M. C., M. Hammerschmidt, P. Haffter, and C. Nüsslein-Volhard. Large-scale mutagenesis in the zebrafish: in search of genes controlling development in a vertebrate. Curr. Biol. 4: 189-202, 1994.
30. Nataraj, A. J., I. Olivos-Glander, N. Kusukawa, and W. E. Highsmith, Jr. Single-strand conformation polymorphism and heteroduplex analysis for gel-based mutation detection. Electrophoresis 20: 1177-1185, 1999.
31. Postlethwait, J., S. Johnson, C. N. Midson, W. S. Talbot, M. Gates, E. W. Ballenger, D. Africa, R. Andrews, T. Carl, J. S. Eisen, S. Horne, C. B. Kimmel, M. Hutchinson, M. Johnson, and A. Rodriguez. A genetic linkage map for the zebrafish. Science 264: 699-703, 1994.
32. Rieder, M. J., S. L. Taylor, V. O. Tobe, and D. A. Nickerson. Automating the identification of DNA variations using quality-based fluorescence resequencing: analysis of the human mitochondrial genome. Nucleic Acids Res. 26: 967-973, 1998.
33. Riley, B. B., and D. J. Grunwald. Efficient induction of point mutations allowing recovery of specific locus mutations in zebrafish. Proc. Natl. Acad. Sci. USA 92: 5997-6001, 1995.
34. Rudnicki, M. A., T. Braun, S. Hinuma, and R. Jaenisch. Inactivation of MyoD in mice leads to up-regulation of the myogenic HLH gene Myf-5 and results in apparently normal muscle development. Cell 71: 383-390, 1992.
35. Rudnicki, M. A., P. N. J. Schnegelsberg, R. H. Stead, T. Braun, H. H Arnold, and R. Jaenisch. MyoD or myf-5 is required for the formation of skeletal muscle. Cell 75: 1351-1359, 1993.
36. Scheer, N., and J. A. Campos-Ortega. Use of the Gal4-UAS technique for targeted gene expression in the zebrafish. Mech. Dev. 80: 153-158, 1999.
37. Shimoda, N., E. W. Knapik, J. Ziniti, C. Sim, E. Yamada, S. Kaplan, D. Jackson, F. de Sauvage, H. Jacob, and M. C. Fishman. Zebrafish genetic map with 2000 microsatellite markers. Genomics 58: 219-232, 1999.
38. Shoji, W., C. S. Yee, and J. Y. Kuwada. Zebrafish semaphorin Z1a collapses specific growth cones and alters their pathway in vivo. Development 125: 1275-1283, 1998.
39. Smooker, P. M., and R. G. Cotton. The use of chemical reagents in the detection of DNA mutations. Mutat. Res. 288: 65-77, 1993.
40. Solnica-Krezel, L., A. F. Schier, and W. Driever. Efficient recovery of ENU-induced mutations from the zebrafish germline. Genetics 136: 1401-1420, 1994.
41. Streisinger, G., F. Coale, C. Taggart, C. Walker, and D. J. Grunwald. Clonal origins of cells in the pigmented retina of the zebrafish eye. Dev. Biol. 131: 60-69, 1989.
42. Ungar, A. R., K. A. Heide, and R. T. Moon. Production of androgenetic haploids in zebrafish with ultraviolet light. Mol. Mar. Biol. Biotechnol. 7: 320-326, 1998.
43. Walker, C., and G. Streisinger. Induction of mutations by gamma-rays in pregonial germ cells of zebrafish embryos. Genetics 103: 125-136, 1983.
44. Walker, C. Haploid Screens and gamma-ray mutagenesis. Methods Cell. Biol. 60: 43-70, 1999.
45. Westerfield, M. The Zebrafish Book: A Guide for the Laboratory Use of Zebrafish (Brachydanio rerio). Eugene, OR: Univ. of Oregon Press, 1989.
46. Yandell, M. D., L. G. Edgar, and W. B. Wood. Trimethylpsoralen induces small deletion mutations in Caenorhabditis elegans. Proc. Natl. Acad. Sci. USA 91: 1381-1385, 1994.
47. Yoon, C., K. Kawakami, and N. Hopkins. Zebrafish vasa homologue RNA is localized to the cleavage planes of 2- and 4-cell-stage embryos and is expressed in the primordial germ cells. Development 124: 3157-3165, 1997.