The crystal structure of a sulfurtransferase from Azotobacter vinelandii highlights the evolutionary relationship between the rhodanese and phosphatase enzyme families

Journal of Molecular Biology

Volumn 298, Issue 4, 2000, Pages 691-704

  Bordo, Domenico ^a   Deriu, Daniela ^a   Colnaghi, Rita ^b   Carpen, Aristodemo ^b   Pagani, Silvia ^b   Bolognesi, Martino ^a  

^a UNIVERSITY OF GENOA   (Italy)

^b UNIVERSITY OF MILAN   (Italy)

Author keywords

Cdc25; Phosphatase; Rhodanese; Sulfurtransferase

Indexed keywords

PHOSPHATASE; THIOSULFATE SULFURTRANSFERASE;

ARTICLE; AZOTOBACTER VINELANDII; CATALYSIS; CONFORMATION; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; ENZYME ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN FAMILY;

AZOTOBACTER VINELANDII; BACTERIA (MICROORGANISMS); BOVINAE; EUKARYOTA; PROKARYOTA;

EID: 0034640125     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.3651     Document Type: Article

References (72)

1. 1 ATPase
2. The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
3. Crystal structure of human protein tyrosine phosphatase 1B
4. Chemical modification of rhodanese with sulfite
5. Ligand binding: Proteinase-protein inhibitor interactions
6. Crystallization and preliminary crystallographic investigations of rhodanese from Azotobacter vinelandii
7. Patterson correlation searches and refinement
8. Crystal structure of a novel human peroxidase enzyme at 2.0 A resolution
9. The CCP4 suite: Programs for protein crystallography
10. Cloning, sequence analysis and overexpression of the rhodanese gene of Azotobacter vinelandii
11. Maximum likelyhood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelengh anomalous diffraction methods
12. Structural superposition of proteins with unknown alignment and detection of topological similarity using a six-dimensional search algorithm
13. Disruption of a rhodanese-like gene results in cysteine auxotrophy in Saccharopolyspora erythraea
14. Genomic organization of the mycobacterial sigma gene cluster
15. An extensively modified version of MOLSCRIPT that includes greatly enhanced coloring capabilities
16. Crystal structure of the catalytic domain of the human cell cycle control phosphatase, Cdc25A
17. PHASES-95: A program package for processing and analyzing diffraction data from macromolecules
18. Energetics of charge-charge interactions in proteins
19. On the calculation of electrostatic interactions in proteins
20. Active site structural features for chemically modified forms of rhodanese
21. Structure of sulfur-substituted rhodanese at 1.36 Å resolution
22. Enhancement of serine-sensitivity by a gene encoding rhodanese-like protein in Escherichia coli
23. A Model of Cdc25 phosphatase catalytic domain and Cdk-interaction surface based on the presence of a rhodanese homology domain
24. The α-helix dipole and the properties of proteins
25. The use of intrinsic protein fluorescence to quantitate enzyme-bound persulfide and to measure equilibria between intermediates in rhodanese catalysis
26. Improved preparation of bovine liver rhodanese
27. Mutation of cysteine 254 facilitates the conformational changes accompanying the interconversion of persulfide-substituted and persulfide-free rhodanese
28. Steady-state kinetics of 3-mercaptopyruvate sulfurtransferase from bovine kidney
29. 3-mercaptopyruvate sulfurtransferase: Rapid equilibrium-ordered mechanism with cyanide as the acceptor substrate
30. Primary structure of avian hepatic rhodanese
31. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
32. PROCHECK: A program to check the strereochemical quality of protein structures
33. Isolation and characterization of a sulfur-regulated gene encoding a periplasmically localized protein with sequence similarity to rhodanese
34. Effect of cysteine 25 on the ionization of histidine-159 in papain as determined by proton nuclear magnetic resonance spectroscopy
35. Differences in the binding of sulfate, selenate and thiosulfate ions to bovine liver rhodanese, and a description of a binding site for ammonium and sodium ions. An X-ray diffraction study
36. The sulfurtransferase activity and structure of rhodanese are affected by site-directed replacement of Arg186 and Lys249
37. Enzymatic desulfuration of beta-mercaptopyruvate
38. Raster3d, a program for photorealistic molecular graphics
39. Recombinant bovine rhodanese: Purification and comparison with bovine liver rhodanese
40. Refinement of macromolecular structures by the maximum-likelyhood method
41. Role of amino acid residues in the active-site of rat liver mercaptopyruvate sulfurtransferase
42. Cytosolic mercaptopyruvate sulfurtransferase is evolutionarily related to mitochondrial rhodanese
43. AMoRe: An automated package for molecular replacement
44. Oscillation data reduction program
45. Processing of X-ray diffraction data collected in oscillation mode
46. Enzymic synthesis of the iron-sulfur cluster of spinach ferredoxin
47. Identification of sulfurtransferase enzymes in Azotobacter vinelandii
48. Cloning and sequence analysis of the human liver rhodanese. Comparison with the bovine and chicken enzymes
49. Reaction of rhodanese with dithiothreitol
50. wARP: Improvement and extension of crystallographic phases by weighted averaging of multiple refined dummy atomic models
51. An integrated map of the genome of the tubercle bacillus, Mycobacterium tuberculosis H37Rv, and comparison with Mycobacterium leprae
52. The covalent and tertiary structure of bovine liver rhodanese
53. The structure of bovine liver rhodanese. II. The active-site in the sulfur-substituted and the sulfur-free enzyme
54. 2/M phase transtition of the cell cycle
55. Exploring structural homology of proteins
56. An expanded mechanism for rhodanese catalysis
57. On the catalytic effect of blood serum on the reaction between colloidal sulfur and cyanide
58. Crystal structure of Yersinia protein tyrosine phosphatase at 2.5 A and the complex with tungstate
59. The crystal structure of a low-molecular weight phosphotyrosine protein phosphatase
60. The detection of kinetic intermediate(s) during refolding of rhodanese
61. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
62. The α-helix as an electric macro-dipole
63. Molecular cloning, sequencing and characterization of cDNA of rat liver rhodanese, a thiosulphate sulphurtransferase
64. Active site cysteinyl and arginyl residues of rhodanese. A novel formation of disulfide bonds in the active-site promoted by phenylglyoxal
65. Rhodanese
66. Thiosulfate:cyanide sulfurtransferase (rhodanese)
67. The sulfurtransferases
68. Crystal structure of the dual-specific protein phosphatase VHR
69. Active site labeling of the Yersinia protein tyrosine phosphatase: The determination of the pK(a) of the active-site and the function of the conserved histidine 402