Quick detection of Ascochyta lentis from lentil seeds using Polymerase Chain Reaction (PCR) based techniques

Pakistan Journal of Botany

Volumn 32, Issue 1, 2000, Pages 45-56

  Hussain, Shaukat ^a,b   Tsukiboshi, Takao ^a   Uematsu, Tsutomu ^a  

^a NATIONAL INSTITUTE FOR AGRO ENVIRONMENTAL SCIENCES   (Japan)

^b NATIONAL AGRICULTURAL RESEARCH CENTRE   (Pakistan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0034583044     PISSN: 05563321     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (38)

1. Ahmed, S. and S.P.S. Beniwal. 1988. Seedborne nature of Ascochyta lentis in lentil. Lens Newsletter, 15: 30-31.
2. Alam, S.S., R.N. Strange and S.H. Qureshi. 1987. Isolation of Ascochyta rabiei and a convenient method for copious inoculum production. The Mycologist, 21: 20.
3. Altschul, S.F., W. Gish, W. Miller, E.W. Myers and D.J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol., 215: 403-410.
4. Annamalai, P., H. Ishii, D. Lalithakumari and R. Revathi. 1995. Polymerase chain reaction and its applications in fungal disease diagnosis. Journal of Plant Diseases and Protection, 102: 91-104.
5. Audy, P., C.E. Braat, G. Saindon, H.C. Huang and A. Laroche. 1996. A rapid and sensitive PCR-based assay for concurrent detection of bacteria causing common and halo blight in bean seed. Phytopathology, 86: 361-366.
6. Barry, T., G. Colleran, M. Glennon, L.K. Dunican and F. Gannon. 1991. The 16S/23S ribosomal spacer region as a target for DNA probes to identify eubacteria. PCR Methods Appl., 1: 51-56.
7. Brown, A.E., S. Muthumeenkshi, S. Sreenivasaprasad, P.R. Mills and T.R. Swinburne. 1993. A PCR primers specific to Cylindrocarpon heteronema for detection of the pathogen in apple wood. FEMS Microbiol. Letters, 108: 117-120.
8. Burns, T.D., T.J. White and J.W. Taylor. 1991. Fungal molecular systematics. Annu. Rev. Ecol. Syst., 22: 525-564.
9. Chen, W., L.E. Gray and C.R. Grau. 1996. Molecular differentiation of fungi associated with brown stem rot and detection of Phialophora gregata in resistant and susceptible soybean cultivars. Phytopathology, 86: 1140-1148.
10. Demeke, T. and R.P. Adams. 1992. The effects of plant polysaccharides and buffer additives on PCR. BioTechniques, 12: 332-33.
11. Eresk, T., J.E. Schoelz and J.T. English. 1994. PCR amplification of species-specific DNA sequences can distinguish among Phytophthora species. Appl. Environ. Microbiol., 60: 2616-2621.
12. Forster, H., P. Oudemans and M.D. Coffey. 1990. Mitochondrial and nuclear DNA diversity within six species of Phytophthora. Erp. Mycol., 14: 18-31.
13. Goodwin, P.H., B.C. Kirkpatrick and J.M. Duniway. 1989. Cloned DNA probes for identification of Phytophthora parasitica. Phytopathology, 79:716-721.
14. Higgins, D.G., A.J. Bleasby and R. Fuchs. 1992. CLUSTAL V: Improved software for multiple sequence alignment. Comput. Appl. Biosci., 8: 189-191.
15. Hussain, S., M. Bashir and A. Ali. 1999. Pathogenic variability within isolates of Ascochyta lentis from Pakistan. Pak. J. of Biological Sciences, 2: 394-395.
16. Kaiser, W.J. 1997. Inter-and intranational spread of ascochyta pathogens of chickpea, fababean and lentil. Canadian Journal of Plant Pathology, 19: 215-224.
17. Kaiser, W.J. 1992. Fungi associated with the seeds of commercial lentils from the US Pacific Northwest. Plant Disease, 76: 355-360.
18. Kaiser, W.J., P.C. Stanwood and R.M. Hannan. 1989. Survival and pathogenicity of Ascochyta fabae f.sp. lentis in lentil seeds after storage for four years at 20 to -196°C. Plant Disease, 73: 762-764.
19. Kaiser, W.J. and R.M. Hannan. 1986. Incidence of seedborne Ascochyta lentis in lentil germplasm. Phytopathology, 76: 355-360.
20. Kaiser, W.J. 1972. Occurrence of three fungal diseases of chickpea in Iran. FAO Plant Prot. Bull., 20: 73-79.
21. Khan, B.A., I.U. Haq, F.U. Rehman and M. Aslam. 1983. Ascochyta blight of lentil- A new disease in Pakistan. Pak. J. Bot., 15: 121.
22. Lee, S.B., T.J. White and J.W. Taylor. 1993. Detection of Phytophthora species by oligonucleotide hybridization to amplified ribosomal DNA spacers. Phytopathology, 83: 177-181.
23. Lee, S.B. and J.W. Taylor. 1992. Phylogeny of five fungus-like protoctistan Phytophtora species, inferred from the internal transcribed spacers of ribosomal DNA. Mol. Biol. Evol., 94: 636-653.
24. Lee, I.M., R.W. Hammond, R.E. Davis and D.E. Gunderson. 1992a. Phylogenetics relationships among plant pathogenic mycoplasmalike organisms (MLOs) based on 16S rRNA sequence analysis. Phytopathology, 82: 1094 (Abstr.).
25. Leite, R.P., J.B. Jr. Jones, G.C. Somodi, G.V. Minsavage and R.E. Stall. 1995. Detection of Xanthomonas campestris pv. Vesicatoria associated with pepper and tomato seed by DNA amplification. Plant Disease, 79: 917-922.
26. Maes, M., P. Garbeva and O. Kameon. 1996. Recognition and detection in seed of the Xanthomonas pathogens that cause cereal leaf streak using rDNA spacer sequences and polymerase chain reaction. Phytopathology, 86: 63-69.
27. Morrall, R.A.A. and D.L. McKenzie. 1974. A note on the inadvertent introduction to North America of Ascochyta rabiei, a destructive pathogen of chickpea. Plant disease Rep., 58: 342-345.
28. Morrall, R.A.A. and J.W. Sheppard. 1981. Ascochyta blight of lentils in western Canada: 1978 to 1980. Can. Plant Dis. Surv., 61: 7-13.
29. Nasir, M. and T.W. Bretag. 1997. Prevalence of Ascochyta fabae f.sp. lentis on lentil seed from Victoria, Australia. Australasian Plant Pathology, 26: 117-120.
30. Oudemans, P. and M.D. Coffey. 1991. A revised systematics of twelve papillate Phytophthora species based on isozyme analysis. Mycol. Res., 95: 1025-1046.
31. Panabieres, F., A. Marais, F. Trentin, P. Bonnet and P. Ricci. 1989. Repetitive DNA polyniorphsism analysis as a tool for identifying Phytophthora species. Phytopathology, 79: 1105-1109.
32. Qureshi, S.H., M. Bashir and S.S. Alam. 1985. Diseases of rabi pulses and their control. Pakistan Agriculture, 6: 17-19.
33. Schaad, N.W., S.S. Cheong, S. Tamaki, E. Hatziloukas and N.J. Panopoulos. 1995. A combined biological and enzymatic amplification (BIO-PCR) technique to detect Pseudomonas syringae pv. phaseolicola in bean seed extracts. Phytopathology, 85: 243-248.
34. Schilling, A.G., E.M. Moller and H.H. Geiger. 1996. Polymerase chain reaction-based assays for the detection for species-specific detection of Fusarium culmorum, F. graminearum and F. avenaceum. Phytopathology, 86: 515-522.
35. Schoen, C.D., D. Knorr and G. Leone. 1996. Detection of potato leaf roll virus in dormant potato tubers by immunocapture and a fluorogenic 5′ nuclease RT-PCR assay. Phytopathology, 86: 993-999.
36. Simay, E.I. 1990. Occurrence of Epicoccum and Stemphylium leaf spot of Lens culinaris Medik., in Hungary. Lens Newsletter, 17: 17-18.
37. Stackebrandt, E., W. Liesack and D. Witt. 1992. Ribosomal RNA and rDNA sequences analyses. Gene, 115: 255-60.
38. Ward, D.M., M.M. Bateson, R. Weller and A.L. Ruff-Roberts. 1993. Ribosomal RNA analysis of microorganisms as they occur in nature. Adv. Microb. Ecol., 12: 219-86.