Probing Contacts of Phosphate Groups of Oligonucleotides from the Non-Template Strand of lac UV5 Promoter with E. coli RNA Polymerase Using Regioselective Cross-Linking

Biochemistry (Moscow)

Volumn 65, Issue 6, 2000, Pages 640-650

  Rudakova, E A ^a   Ivanovskaya, M G ^a   Kozlov, M V ^a   Khoretonenko, M V ^a   Oretskaya, T S ^a   Nikiforov, V G ^b  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

^b INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

Author keywords

Activated phosphate group; Cross linking; Lac UV5 promoter; Oligonucleotide; RNA polymerase from E. coli

Indexed keywords

CROSS LINKING REAGENT; DNA DIRECTED RNA POLYMERASE; OLIGONUCLEOTIDE;

ARTICLE; CHEMISTRY; ENZYMOLOGY; ESCHERICHIA COLI; HYDROLYSIS; LACTOSE OPERON; METABOLISM; MOLECULAR PROBE; NUCLEOTIDE SEQUENCE; PROMOTER REGION; PROTEIN BINDING;

BASE SEQUENCE; CROSS-LINKING REAGENTS; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; HYDROLYSIS; LAC OPERON; MOLECULAR PROBES; OLIGONUCLEOTIDES; PROMOTER REGIONS (GENETICS); PROTEIN BINDING;

EID: 0034201208     PISSN: 00062979     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (25)

1. Helmann, J. D., and Chamberlin, M. J. (1988) Annu. Rev. Biochem., 57, 839-872.
2. Hawley, D. K., and McClure, W. R. (1983) Nucleic Acids Res., 11, 2237-2255.
3. DeHaseth, P. L., and Helmann, J. D. (1995) Mol. Microbiol., 16, 817-824.
4. Owens, J. T., Chmura, A. J., Murakami, K., Fujita, N., Ishihama, A., and Meares, C. F. (1998) Biochemistry, 37, 7670-7675.
5. Roberts, C. W., and Roberts, J. W. (1996) Cell, 86, 495- 501.
6. Bown, J. A., Owens, J. T., Meares, C. F., Fujita, N., Ishihama, A., Busby, S. J., and Minchin, S. D. (1999) J. Biol. Chem., 274, 2263-2270.
7. Savinkova, L. K., Baranova, L. V., Knorre, V. L., and Salganik, R. I. (1988) Mol. Biol. (Moscow), 22, 807-812.
8. Marr, M. T., and Roberts, J. W. (1997) Science, 276, 1258- 1260.
9. Tulokhonov, I.I., Savinkova, L. K., Rau, V. A., and Rar, V. A. (1999) Mol. Biol. (Moscow), 33, 169-173.
10. Fedoriw, A. M., Liu, H., Anderson, V. E., and deHaseth, P. L. (1998) Biochemistry, 37, 11971-11979.
11. Heyduk, E., and Heyduk, T. (1999) J. Biol. Chem., 274, 3315-3322.
12. Kulbachinskiy, A., Mustaev, A., Goldfarb, A., and Nikiforov, V. (1999) FEBS Lett., 454, 71-74.
13. Chenchik, A. A., Bibilashvili, R. Sh., and Mirzabekov, A. D. (1981) Doklady RAN, 260, 765-768.
14. Chenchik, A. A., Bibilashvili, R. Sh., Mirzabekov, A. D., and Shik, V. V. (1982) Mol. Biol. (Moscow), 16, 35-46.
15. Taran, E. A., Ivanovskaya, M. G., Gait, M. J., and Shabarova, Z. A. (1998) Mol. Biol. (Moscow), 32, 832- 839.
16. Markovtsov, V., Mustaev, A., and Goldfarb, A. (1996) Proc. Natl. Acad. Sci. USA, 93, 3221-3226.
17. Bergess, R. R., and Jendrisak, J. J. (1975) Biochemistry, 14, 4634-4638.
18. Borukhov, S., and Goldfarb, A. (1993) Protein Express. Purif., 4, 503-511.
19. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, New York.
20. Malhotra, A., Severinova, E., and Darst, S. A. (1996) Cell, 87, 127-136.
21. Siegele, D. A., Hu, J. C., Walter, W. A., and Gross, C. A. (1989) J. Mol. Biol., 206, 591-603.
22. Waldburger, C., Gardella, T., Wong, R., and Susskind, M. M. (1990) J. Mol. Biol., 215, 267-276.
23. Mustaev, A., Kashlev, M., Lee, J., Polyakov, A., Lebedev, A., Zalenskaya, K., Grachev, M., Goldfarb, A., and Nikiforov, V. (1991) J. Biol. Chem., 266, 23927-23931.
24. Grachev, M. A., Lukhtanov, E. A., and Mustaev, A. A. (1990) Bioorg. Khim., 16, 1379-1385.
25. Nudler, E., Avetissova, E., Markovtsov, V., and Goldfarb, A. (1996) Science, 273, 211-217.