-
1
-
-
0027195891
-
Local self-similarity of sequence in mammalian nuclear DNA is modulated by a 180bp periodicity
-
Bains, W. 1993. Local self-similarity of sequence in mammalian nuclear DNA is modulated by a 180bp periodicity. J. Theor. Biol. 161, 137-143.
-
(1993)
J. Theor. Biol.
, vol.161
, pp. 137-143
-
-
Bains, W.1
-
2
-
-
4243764255
-
Compositional segmentation and long-range fractal correlation in DNA sequences
-
Bernaola-Galvan, P., Roman-Roldan, R., and Oliver, J.L. 1996. Compositional segmentation and long-range fractal correlation in DNA sequences. Phys. Rev. E. 53(5), 5181-5189.
-
(1996)
Phys. Rev. E.
, vol.53
, Issue.5
, pp. 5181-5189
-
-
Bernaola-Galvan, P.1
Roman-Roldan, R.2
Oliver, J.L.3
-
3
-
-
0024805395
-
The isochore organization of the human genome
-
Bernardi, G. 1989. The isochore organization of the human genome. Ann. Rev. of Gen. 23, 637-661.
-
(1989)
Ann. Rev. of Gen.
, vol.23
, pp. 637-661
-
-
Bernardi, G.1
-
4
-
-
0029587471
-
The human genome: Organization and evolutionary history
-
Bernardi, G. 1995. The human genome: organization and evolutionary history. Ann. Rev. Gen. 29, 445-476.
-
(1995)
Ann. Rev. Gen.
, vol.29
, pp. 445-476
-
-
Bernardi, G.1
-
5
-
-
0021810948
-
The mosaic genome of warm-blooded vertebrate
-
Bernardi, G., Olofson, B., Filipski. J., Zerial. M., Salinas, J. et al. 1985. The mosaic genome of warm-blooded vertebrate. Science, 228, 953-958.
-
(1985)
Science
, vol.228
, pp. 953-958
-
-
Bernardi, G.1
Olofson, B.2
Filipski, J.3
Zerial, M.4
Salinas, J.5
-
6
-
-
0002381152
-
A Bayesian approach to identification of change-points
-
Booth, N.B., and Smith A.F.M. 1992. A Bayesian approach to identification of change-points. J. Econometr. 19, 7-22.
-
(1992)
J. Econometr.
, vol.19
, pp. 7-22
-
-
Booth, N.B.1
Smith, A.F.M.2
-
8
-
-
0000804982
-
Estimating the correct mean of a normal distribution which is subjected to a change in time
-
Chernoff, H., and Zacks, S. 1964. Estimating the correct mean of a normal distribution which is subjected to a change in time. Am. Math. Statist., 35, 999-1018.
-
(1964)
Am. Math. Statist.
, vol.35
, pp. 999-1018
-
-
Chernoff, H.1
Zacks, S.2
-
9
-
-
0025775913
-
Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins
-
D'Onofrio, G., Mouchiroud D., Aissani B., Gautier C., and Bernardi G. 1991. Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins. J. Mol. Evol. 32, 504-510.
-
(1991)
J. Mol. Evol.
, vol.32
, pp. 504-510
-
-
D'Onofrio, G.1
Mouchiroud, D.2
Aissani, B.3
Gautier, C.4
Bernardi, G.5
-
10
-
-
1842326139
-
Bayesian statistical analysis of protein side-chain rotamer preferences
-
Dunbrack, R.L., and Cohen, F.B. 1997. Bayesian statistical analysis of protein side-chain rotamer preferences, Protein Science, 6, 1661-1681.
-
(1997)
Protein Science
, vol.6
, pp. 1661-1681
-
-
Dunbrack, R.L.1
Cohen, F.B.2
-
11
-
-
0020480512
-
Recognition of protein coding regions in DNA sequences
-
Fickett, J.W. 1982. Recognition of protein coding regions in DNA sequences. Nucl. Acid. Res. 10, 5303-5318.
-
(1982)
Nucl. Acid. Res.
, vol.10
, pp. 5303-5318
-
-
Fickett, J.W.1
-
12
-
-
0027297217
-
Computation of biopolymers: A general approach to different problems
-
Finkelstein, A.V., and Roytberg, M.A. 1993. Computation of biopolymers: A general approach to different problems. BioSystems, 30, 1-19.
-
(1993)
BioSystems
, vol.30
, pp. 1-19
-
-
Finkelstein, A.V.1
Roytberg, M.A.2
-
14
-
-
0030889251
-
G and T nucleotide contents show specie-invariant negative correlation for all three codon positions
-
Frank, G.K., and Makeev, V.Ju. 1997. G and T nucleotide contents show specie-invariant negative correlation for all three codon positions. J. Biomol. Str. Dynam. 14, 629-639.
-
(1997)
J. Biomol. Str. Dynam.
, vol.14
, pp. 629-639
-
-
Frank, G.K.1
Makeev, V.Ju.2
-
15
-
-
0026782934
-
Statistical analysis and prediction of the exonic structure of human genes
-
Gelfand, M.S. 1992. Statistical analysis and prediction of the exonic structure of human genes. J. Mol. Evol. 35, 239-253.
-
(1992)
J. Mol. Evol.
, vol.35
, pp. 239-253
-
-
Gelfand, M.S.1
-
16
-
-
0029258948
-
Prediction of function in DNA sequence analysis
-
Gelfand, M.S. 1995. Prediction of function in DNA sequence analysis J. Comp. Biol. 2, 87-117.
-
(1995)
J. Comp. Biol.
, vol.2
, pp. 87-117
-
-
Gelfand, M.S.1
-
17
-
-
0030740993
-
Avoidance of palindromic words in bacterial and archaeal genomes: A close connection with restriction enzymes
-
Gelfand, M.S., and Koonin, E.V. 1997. Avoidance of palindromic words in bacterial and archaeal genomes: a close connection with restriction enzymes. Nucl. Acid. Res. 27, 2430-2439.
-
(1997)
Nucl. Acid. Res.
, vol.27
, pp. 2430-2439
-
-
Gelfand, M.S.1
Koonin, E.V.2
-
18
-
-
0013675465
-
Estimating entropies from finite samples
-
J. Freund ed., Kosster Verlag, Berlin
-
Grosse, I. 1996. Estimating entropies from finite samples. Dynamik - Evolution - Strukturen, J. Freund ed., Kosster Verlag, Berlin, 181-190.
-
(1996)
Dynamik - Evolution - Strukturen
, pp. 181-190
-
-
Grosse, I.1
-
19
-
-
0028850576
-
Distinctive sequence features in protein coding, genic non-coding and intergenic human DNA
-
Guigo, R., and Fickett, J.W. 1995. Distinctive sequence features in protein coding, genic non-coding and intergenic human DNA, J. Mol. Biol. 253, 51-60.
-
(1995)
J. Mol. Biol.
, vol.253
, pp. 51-60
-
-
Guigo, R.1
Fickett, J.W.2
-
20
-
-
5244285298
-
Correaltions in DNA sequences: The role of protein coding segments
-
Herzel, H., and Grosse, I. 1997. Correaltions in DNA sequences: The role of protein coding segments. Phys. Rev. E. 55, 800-810.
-
(1997)
Phys. Rev. E.
, vol.55
, pp. 800-810
-
-
Herzel, H.1
Grosse, I.2
-
21
-
-
0027458843
-
Patchiness and correlations in DNA sequences
-
Karlin, S., and Brendel, V. 1993. Patchiness and correlations in DNA sequences. Science, 259, 677-680.
-
(1993)
Science
, vol.259
, pp. 677-680
-
-
Karlin, S.1
Brendel, V.2
-
22
-
-
0028181441
-
Protein modeling using hidden Markov models
-
Krogh, A., Brown, M., Mian, S., Sjolander, K., and Haussler, D 1994(a). Protein modeling using hidden Markov models. J. Mol. Biol. 235, 1501-1531.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, S.3
Sjolander, K.4
Haussler, D.5
-
23
-
-
0027944605
-
A hidden Markov model that finds genes in E. coli DNA
-
Krogh, A., Mian, I.S., and Haussler, D. 1994(b). A hidden Markov model that finds genes in E. coli DNA. Nucl. Acid. Res. 22, 4768-4778.
-
(1994)
Nucl. Acid. Res.
, vol.22
, pp. 4768-4778
-
-
Krogh, A.1
Mian, I.S.2
Haussler, D.3
-
24
-
-
0023115826
-
Occurrence of nucleotide triplets in genes and secondary structure of the coded proteins
-
Kypr, J., and Mrazek, J. 1986. Occurrence of nucleotide triplets in genes and secondary structure of the coded proteins. Int. J. Biol. Macromol. 9(2), 49-53.
-
(1986)
Int. J. Biol. Macromol.
, vol.9
, Issue.2
, pp. 49-53
-
-
Kypr, J.1
Mrazek, J.2
-
25
-
-
0029014572
-
Middle-range clustering of nucleotides in genomes
-
Kypr, J., and Mrazek, J. 1995. Middle-range clustering of nucleotides in genomes. Comp. Appl. Bio. Sci. 11, 195-199.
-
(1995)
Comp. Appl. Bio. Sci.
, vol.11
, pp. 195-199
-
-
Kypr, J.1
Mrazek, J.2
-
26
-
-
0024801156
-
Nucleotide composition bias and CpG dinucleotide content in the genomes of HIV and HTLV 1/2
-
Kypr, J., Mrazek, J., and Reich, J. 1989. Nucleotide composition bias and CpG dinucleotide content in the genomes of HIV and HTLV 1/2. Biochem. Biophys. Acta. 1009, 280-282.
-
(1989)
Biochem. Biophys. Acta.
, vol.1009
, pp. 280-282
-
-
Kypr, J.1
Mrazek, J.2
Reich, J.3
-
28
-
-
0027122449
-
DNA correlations (scientific correspondence)
-
Li, W., and Kaneko E. 1992. DNA correlations (scientific correspondence) Nature, 360, 635-636.
-
(1992)
Nature
, vol.360
, pp. 635-636
-
-
Li, W.1
Kaneko, E.2
-
29
-
-
43949156767
-
Understanding long-range correlations in DNA sequences
-
Li, W. 1994. Understanding long-range correlations in DNA sequences. Physica D. 75, 392-416.
-
(1994)
Physica D.
, vol.75
, pp. 392-416
-
-
Li, W.1
-
30
-
-
0031298464
-
The study of correlation structure of DNA sequences: A critical review
-
Li, W. 1997. The study of correlation structure of DNA sequences: A critical review. Computer and Chemistry 21(4), 257-295.
-
(1997)
Computer and Chemistry
, vol.21
, Issue.4
, pp. 257-295
-
-
Li, W.1
-
31
-
-
0025952277
-
Divergence measures based on the Shannon entropy
-
Lin, J. 1991. Divergence measures based on the Shannon entropy. IEEE Trans. Inf. Theor. 37, 145-149.
-
(1991)
IEEE Trans. Inf. Theor.
, vol.37
, pp. 145-149
-
-
Lin, J.1
-
33
-
-
0033059370
-
Bayesian inference on biopolymer models
-
Liu, S.L., and Lawrence, C.E. 1999 Bayesian inference on biopolymer models, Bioinformatics 15, 38-52.
-
(1999)
Bioinformatics
, vol.15
, pp. 38-52
-
-
Liu, S.L.1
Lawrence, C.E.2
-
34
-
-
0028081052
-
Biased distribution of adenine and thymine in gene nucleotide sequences
-
Mrazek, J., and Kypr, J. 1994. Biased distribution of adenine and thymine in gene nucleotide sequences. J. Mol. Evol. 39, 439-447.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 439-447
-
-
Mrazek, J.1
Kypr, J.2
-
35
-
-
0028242762
-
Correlation approach to identify coding regions in DNA sequences
-
Ossadnik, S.M., Buldyrev, S.V., Goldberger, A.L., Havlin, S., Mantegna, R.N., Peng, C.-K., Simons, M., and Stanley, H.E. 1994. Correlation approach to identify coding regions in DNA sequences. Biophysical Journal, 67, 64-70.
-
(1994)
Biophysical Journal
, vol.67
, pp. 64-70
-
-
Ossadnik, S.M.1
Buldyrev, S.V.2
Goldberger, A.L.3
Havlin, S.4
Mantegna, R.N.5
Peng, C.-K.6
Simons, M.7
Stanley, H.E.8
-
36
-
-
0026585152
-
Long-range correlations in nucleotide sequences
-
Peng, C.-K., Buldyrev, S.V., Goldberger, A.L., Havlin, S., Sciortino, F., Simons, M., and Stanley, H.E. 1992. Long-range correlations in nucleotide sequences. Nature, 356, 168-170.
-
(1992)
Nature
, vol.356
, pp. 168-170
-
-
Peng, C.-K.1
Buldyrev, S.V.2
Goldberger, A.L.3
Havlin, S.4
Sciortino, F.5
Simons, M.6
Stanley, H.E.7
-
37
-
-
0013693057
-
Bayesian approach to DNA segmentation
-
Moscow. Moscow State University
-
Ramensky, V.E., Makeev, V.Ju., Roitberg, M.A., and Tumanyan, V.G. 1998. Bayesian approach to DNA segmentation. In: Proceedings of the Theoretical Approach in Biophysics conference. Moscow. Moscow State University.
-
(1998)
Proceedings of the Theoretical Approach in Biophysics Conference
-
-
Ramensky, V.E.1
Makeev, V.Ju.2
Roitberg, M.A.3
Tumanyan, V.G.4
-
38
-
-
0030787520
-
Improved splice site detection in Genie
-
3
-
Reese, M.G., Eeckman, F.H., Kulp, D., and Haussler, D. 1997. Improved splice site detection in Genie. J. Comp. Biol. 4:3, 311-323.
-
(1997)
J. Comp. Biol.
, vol.4
, pp. 311-323
-
-
Reese, M.G.1
Eeckman, F.H.2
Kulp, D.3
Haussler, D.4
-
39
-
-
0000387692
-
Sequence compositional complexity of DNA through an entropic segmentation method
-
Roman-Roldan, R., Bernaola-Galvan, P., and Oliver, J.L. 1998. Sequence compositional complexity of DNA through an entropic segmentation method. Phys. Rev. Lett. 80(4), 1344-1347.
-
(1998)
Phys. Rev. Lett.
, vol.80
, Issue.4
, pp. 1344-1347
-
-
Roman-Roldan, R.1
Bernaola-Galvan, P.2
Oliver, J.L.3
-
41
-
-
0003913968
-
The Viterbi algorithm
-
available via e-mail from msr@dcs.warwick.ac.uk
-
Ryan, M.S., and Nudd, G.R. 1993. The Viterbi algorithm. Warwick Research Report RR238 available via e-mail from msr@dcs.warwick.ac.uk.
-
(1993)
Warwick Research Report RR238
-
-
Ryan, M.S.1
Nudd, G.R.2
-
42
-
-
0029906607
-
Dirichlet mixtures: A method for improved detection of weak but significant protein sequence homology
-
Sjolander, K., Karplus, K., Brown, M., Hughey, R., Krogh, A., Mian, I.S., and Haussler, D. 1996. Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. Comput. Appl. Biosci. 12, 327-345.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 327-345
-
-
Sjolander, K.1
Karplus, K.2
Brown, M.3
Hughey, R.4
Krogh, A.5
Mian, I.S.6
Haussler, D.7
-
43
-
-
0013654797
-
A Bayesian approach to inference about a changepoint in a sequence of random variables
-
Smith, A.F.M. 1975. A Bayesian approach to inference about a changepoint in a sequence of random variables. Biometrika. 67, 79-84.
-
(1975)
Biometrika
, vol.67
, pp. 79-84
-
-
Smith, A.F.M.1
-
44
-
-
21344490449
-
Bayesian retrospective multiple-changepoint identification
-
Stephens, D.A. 1994. Bayesian retrospective multiple-changepoint identification. Appl. Stat. 43, 159-178.
-
(1994)
Appl. Stat.
, vol.43
, pp. 159-178
-
-
Stephens, D.A.1
-
45
-
-
0000969637
-
A statistical analysis of deoxyribonucleic acid distribution in density gradient centrifugation
-
Sueoka, N. 1959. A statistical analysis of deoxyribonucleic acid distribution in density gradient centrifugation. Proc. Natl. Acad. Sci. 45, 1480-1490.
-
(1959)
Proc. Natl. Acad. Sci.
, vol.45
, pp. 1480-1490
-
-
Sueoka, N.1
-
46
-
-
0001415964
-
The pitch of chromatin DNA is reflected in its nucleotide sequence
-
Trifonov, E.N., and Sussman, J.L. 1980. The pitch of chromatin DNA is reflected in its nucleotide sequence. Proc. Natl. Acad. Sci. 77(7), 3816-3820.
-
(1980)
Proc. Natl. Acad. Sci.
, vol.77
, Issue.7
, pp. 3816-3820
-
-
Trifonov, E.N.1
Sussman, J.L.2
-
47
-
-
0025833642
-
Periodicity in DNA coding sequences: Implication in evolution
-
Tsonis, A.A., Elsner, J.B., and Panagiotis, A. 1991. Periodicity in DNA coding sequences: implication in evolution. J. Theor. Biol. 151, 323-331.
-
(1991)
J. Theor. Biol.
, vol.151
, pp. 323-331
-
-
Tsonis, A.A.1
Elsner, J.B.2
Panagiotis, A.3
-
48
-
-
0013690643
-
Estimating functions of probability distributions from a finite set of samples. Part I and II
-
(unpublished). Send emails to comp-gas@xyz.lanl.gov with subjects "get 9403001" and "get 9403002" to get an encoded postscript version
-
Wolf, D.R., and Wolpert, D.H. 1993. Estimating functions of probability distributions from a finite set of samples. Part I and II. Los Alamos National Laboratory Report No. LA-UR-93-833 (unpublished). Send emails to comp-gas@xyz.lanl.gov with subjects "get 9403001" and "get 9403002" to get an encoded postscript version.
-
(1993)
Los Alamos National Laboratory Report No. LA-UR-93-833
-
-
Wolf, D.R.1
Wolpert, D.H.2
-
49
-
-
0000328645
-
Estimating functions of probability distributions from a finite set of samples
-
Wolpert, D.H., and Wolf, D.R. 1995. Estimating functions of probability distributions from a finite set of samples. Phys. Rew. E. 52, 6841-6854.
-
(1995)
Phys. Rew. E.
, vol.52
, pp. 6841-6854
-
-
Wolpert, D.H.1
Wolf, D.R.2
-
50
-
-
0031837003
-
Structural and transcription regulation of the human insulin-like growth factor binding protein 4 gene (IGFBP4)
-
Zazzi, H., Nikosjkov, A., Hall, K., and Luthman, H. 1998. Structural and transcription regulation of the human insulin-like growth factor binding protein 4 gene (IGFBP4) Genomics, 49, 401-410
-
(1998)
Genomics
, vol.49
, pp. 401-410
-
-
Zazzi, H.1
Nikosjkov, A.2
Hall, K.3
Luthman, H.4
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