Correlations in DNA sequences: The role of protein coding segments

Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics

Volumn 55, Issue 1, 1997, Pages 800-810

  Herzel, Hanspeter ^a   Große, Ivo ^b  

^a TECHNISCHE UNIVERSITÄT BERLIN   (Germany)

^b Boston University ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 5244285298     PISSN: 1063651X     EISSN: None     Source Type: Journal    
DOI: 10.1103/PhysRevE.55.800     Document Type: Article

References (59)

1. L L. Gatlin, Information Theory and the Living System (Columbia University Press, New York, 1972).
2. E N. Trifonov and V. Brendel, Gnomic–A Dictionary of Genetic Codes (Balaban, Rehovot, 1986).
3. G. von Heijne, Sequence Analysis in Molecular Biology– Treasure Trove or Trivial Pursuit (Academic, San Diego, 1987).
4. Computers and DNA, edited by G. Bell and T. Marr (Addison-Wesley, Reading, 1990).
5. J D. Watson, M. Gilman, J. Witkowski, and H. Zoller, Recombinant DNA (Freeman, New York, 1992).
6. H P. Yockey, Information Theory and Molecular Biology (Cambridge University Press, Cambridge, England, 1992).
7. N A. Kolchanov and H A. Lim, Computer Analysis of Genetic Macromolecules: Structure, Function and Evolution (World Scientific, Singapore, 1994).
8. B. Lewin, Genes V (Oxford University Press, London, 1994).
9. J. W. C. Shepherd, J. Mol. Evol.17, 94 (1981).
10. J W. Fickett, Nucl. Acid Res.10, 5303 (1982).
11. W. Ebeling, R. Feistel and H. Herzel, Phys. Scr.35, 761 (1987).
12. H. Herzel, Syst. Anal. Mod. Sim.5, 435 (1988).
13. E N. Trifonov, Bull. Math. Biol.51, 417 (1989).
14. J W. Fickett and C.-S. Tung, Nucl. Acid Res.20, 6441 (1992).
15. I. Große, H. Herzel, S V. Buldyrev, and H E. Stanley (unpublished).
16. W. Li, Int. J. Bif. Chaos2, 137 (1992).
17. C K. Peng, S V. Buldyrev, A L. Goldberger, S. Havlin, F. Sciortina, M. Simons and H E. Stanley, Nature356, 186 (1992).
18. R F. Voss, Phys. Rev. Lett.68, 3805 (1992).
19. B. Borstnik, D. Pumpernik and D. Lukman, Europhys. Lett.23, 389 (1993).
20. H. Herzel, A O. Schmitt and W. Ebeling, Chaos, Solitons Fractals4, 97 (1994).
21. A. Arneodo, E. Bacry, P V. Graves and J F. Muzy, Phys. Rev. Lett.74, 3293 (1995).
22. H. Herzel and I. Große, Physica A216, 518 (1995).
23. H. Herzel, W. Ebeling, A O. Schmitt, and M. A. Jiménez-Montaño, in From Simplicity to Complexity in Chemistry, edited by A. Müller, A. Dress, and F. Vögtle (Vieweg, Braunschweig, 1996).
24. V R. Chechetkin and A. Yu. Turygin, J. Phys. A27, 4875 (1994).
25. C. A. C. Dreismann and D. Larhammer, Nature361, 212 (1993).
26. H E. Stanley, S V. Buldyrev, A L. Goldberger, Z D. Goldberger, S. Havlin, R N. Mantegna, S M. Ossadnik, C.-K. Peng and M. Simons, Physica A205, 214 (1994).
27. R A. Elton, J. Theor. Biol.45, 533 (1974).
28. G. Bernardi, B. Olofsson, J. Filipski, M. Zerial, J. Salinas, G. Cuny, M. Meunier-Rotival and F. Rodier, Science228, 953 (1985).
29. J R. Korenberg and M C. Rykowski, Cell53, 391 (1988).
30. G. Bernardi, Ann. Rev. Genet.23, 637 (1989).
31. T. Ikemura, K.-N. Wada and S.-I. Aota, Genomics8, 207 (1990).
32. J W. Fickett, D C. Torney and D R. Wolf, Genomics13, 1056 (1992).
33. S. Karlin and V. Brendel, Science259, 677 (1993).
34. H. Feldmann, EMBO J.13, 5795 (1994).
35. B. Dujon, Nature369, 371 (1994).
36. H. Herzel, W. Ebeling and A O. Schmitt, Phys. Rev. E50, 5061 (1994).
37. G A. Churchill, Bull. Math. Biol.51, 79 (1989).
38. S V. Buldyrev, A L. Goldberger, S. Havlin, C.-K. Peng, M. Simons and H E. Stanley, Phys. Rev. E47, 4514 (1993).
39. W. Li, T G. Marr and K. Kaneko, Physica D75, 392 (1994).
40. S. Kullback, Information Theory and Statistics (Wiley, New York, 1959).
41. H. Herzel and W. Ebeling, Phys. Lett. A111, 1 (1985).
42. W. Li, J. Stat. Phys.60, 823 (1990).
43. L. Luo and H. Li, Bull. Math. Biol.53, 345 (1991).
44. T. Ikemura, J. Mol. Biol.146, 1 (1981).
45. R. Staden, Nucl. Acid Res.12, 551 (1984).
46. P M. Sharp and W.-H. Li, Nucl. Acid Res.15, 1281 (1987).
47. S V. Buldyrev, A L. Goldberger, S. Havlin, C.-K. Peng, H E. Stanley, M. H. R. Stanley and M. Simons, Biophys. J.65, 2673 (1993).
48. P J. Munson, R C. Taylor and G S. Michaels, Nature360, 636 (1992).
49. A O. Schmitt, W. Ebeling and H. Herzel, BioSystems37, 199 (1996).
50. E M. Trifonov and J L. Sussman, Proc. Natl. Acad. Sci. USA77, 3816 (1980).
51. A K. Konopka and G M. Smythers, CABIOS3, 193 (1987).
52. I. Ioshikhes, A. Bolshoy and E N. Trifonov, J. Biomol. Struct. Dyn.9, 1111 (1992).
53. M I. Kanehisa and T Y. Tsong, Biopolymers19, 1617 (1980).
54. S H. White, Annu. Rev. Biophys. Biomol. Struct.23, 407 (1994).
55. A O. Schmitt, E. Kolker, and E N. Trifonov (unpublished).
56. G P. Basharin, Theory Prob. Appl.4, 333 (1959).
57. B. Harris, Topics Inf. Theory (Keszhtely)16, 323 (1975).
58. I. Große, Statistical Analysis of Biosequences, Diplomthesis, Humboldt University, Berlin, 1995.
59. N L. Johnson and S. Kotz, Distributions in Statistics: Continuous Univariate Distributions (Houghton-Mifflin, Boston, 1970).