Phylogeny and biogeography of Juglans (Juglandaceae) based on matK and ITS sequence data

American Journal of Botany

Volumn 87, Issue 6, 2000, Pages 872-882

  Stanford, Alice M ^a,b   Harden, Rachel ^a   Parks, Clifford R ^a  

^a UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF THE VIRGIN ISLANDS   (United States)

Author keywords

ITS; Juglandaceae; Juglans; matK; Phylogeny; Tertiary disjunct; Walnut

Indexed keywords

CHLOROPLAST GENETICS; FOSSIL; GEOGRAPHIC DISTRIBUTION; MATK GENE; MONOPHYLY; MOVEMENT PATTERN; NORTH AMERICA; NUCLEOTIDE SEQUENCE; PARSIMONY ANALYSIS; PHYLOGENY; RIBOSOMAL DNA; SPACER DNA;

BIOGEOGRAPHY; DNA; FOSSIL RECORD; PHYLOGENY;

JUGLANS;

EID: 0034125310     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.2307/2656895     Document Type: Article

References (78)

1. AXELROD, D. I. 1959. Poleward migration of early angiosperm flora. Science 130: 203-307.
2. BALDWIN, B. G. 1992. Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the Compositae. Molecular Phylogenetics and Evolution 1: 3-16.
3. _, M. J. SANDERSON, J. M. PORTER, M. F. WOJCIECHOWSKI, C. S. CAMPBELL, AND M. J. DONOGHUE. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277.
4. BARRON, E. J., C. G. A. HARRISON, J. L. SLOAN, AND W. W. HAY. 1981. Paleogeography, 180 million years ago to the present. Eclogae Geologicae Helvetiae 74: 443-470.
5. BOUFFORD, D. E., AND S. A. SPONGBERG. 1983. Eastern Asian-eastern North American phytogeographical relationships-a history from the time of Linnaeus to the twentieth century. Annals of the Missouri Botanical Garden 70: 423-439.
6. BREMER, K. 1994. Branch support and tree stability. Cladistics 10: 295-304.
7. BRIGGS, J. C. 1987. Biogeography and plate tectonics. Elsevier, Amsterdam, The Netherlands.
8. CHANEY, R. W. 1940. Tertiary forests and continental history. Geological Society of America Bulletin 51: 469-488.
9. _. 1947. Tertiary centers and migration routes. Ecological Monographs 17: 139-148.
10. CHASE, M. W., AND H. G. HILLS. 1991. Silica gel: an ideal material for field preservation of leaf samples for DNA studies. Taxon 40: 215-220.
11. _, et al. 1993. Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Annals of the Missouri Botanical Garden 80: 528-580.
12. CONDE, L. F., AND D. E. STONE. 1970. Seedling morphology in the Juglandaceae, the cotyledonary node. Journal of the Arnold Arboretum 51: 463-477.
13. DARWIN, F. [ed.]. 1887. The life and letters of Charles Darwin. D. Appleton, New York, New York, USA.
14. _ [ed.]. 1903. More letters of Charles Darwin: a record of his work in a series of hitherto unpublished letters. D. Appleton, New York, New York, USA.
15. DAVIS, M. B. 1981. Quaternary history and the stability of forest communities. In D. C. West, H. H. Shugart, and D. B. Botkin [eds.], Forest succession: concepts and applications, 132-153. Springer-Verlag, New York. New York. USA.
16. DELCOURT, P. A., AND H. R. DELCOURT. 1987. Long-term forest dynamics of the Temperate zone. Springer-Verlag, New York, New York, USA.
17. DODE, L. A. 1906. Contribution à l'étude du genre Juglans. Bulletin de la Societé Dendrologique de France 2: 67-97.
18. _. 1909a. Contribution à l'étude du genre Juglans. Bulletin de la Societé Dendrologique de France 11: 140-166.
19. _. 1909b. Contribution à l'étude du genre Juglans. Bulletin de la Societé Dendrologique de France 13: 165-213.
20. DOYLE, J., AND J. DOYLE. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Photochemical Bulletin 19: 11-15.
21. FARRIS, J. S. 1989. The retention index and the rescaled consistency index. Cladistics 5: 417-419.
22. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
23. FJELLSTROM, R. G., AND D. E. PARFITT. 1995. Phylogenetic analysis and evolution of the genus Juglans (Juglandaceae) as determined from nuclear genome RFLPs. Plant Systematics and Evolution 197: 19-32.
24. FRAKES, L. A. 1979. Climates throughout geological time. Elsevier Scientific, Amsterdam, The Netherlands.
25. FUJITA, K. 1978. Pre-Cenozoic tectonic evolution of northeast Siberia. Journal of Geology 86: 159-172.
26. GRAY, A. 1856, 1857. Statistics of the flora of the northern United States. American Journal of Science and Arts II 22: 204-232; 23: 62-84, 369-403.
27. GRAY, A. 1856, 1857. Statistics of the flora of the northern United States. American Journal of Science and Arts II 22: 204-232; 23: 62-84, 369-403.
28. _. 1859. Diagnostic characters of new species of phanerogamous plants collected in Japan by Charles Wright, botanist of the U. S. North Pacific Exploring Expedition. With observations upon the relations of the Japanese flora to that of North America, and of other parts of the Northern Temperate Zone. Memoirs of the American Academy of Arts 67: 377-452.
29. _. 1873. Address of the ex-president of the Association. Proceedings of the American Association for the Advancement of Science 21: 1-31.
30. GRAY, J. L. 1893. The letters of Asa Gray. Houghton, Mifflin, The Riverside Press, Cambridge, Massachusetts, USA.
31. HALENIUS, J. 1750. Plantae rariores Camschatcenses. Thesis, University of Uppsala, Uppsala, Sweden.
32. HALLAM, A. 1981. Relative importance of plate movements, eustasy, and climate in controlling major biogeographical changes since the early Mesozoic. In G. Nelson and D. E. Rosen [eds.], Vicariance biogeography: a critique, 303-330. Columbia University Press, New York, New York. USA.
33. HEIMSCH, C., AND R. H. WETMORE. 1939. The significance of wood anatomy in the taxonomy of the Juglandaceae. American Journal of Botany 26: 651-660.
34. HILLIS, D. M., AND M. T. DIXON. 1992. Ribosomal DNA: molecular evolution and phylogenetic inference. Quarterly Review of Biology 66: 411-453.
35. _, AND J. P. HUELSENBECK. 1992. Signal, noise, and reliability in molecular phylogenetic analysis. Journal of Heredity 83: 189-195.
36. ILJINKSAYA, I. A. 1953. Monografiya roda Pterocarya Kunth. Acta Instituti Botanici Academiae Scientiarum URSS, Ser. I 10: 7-123.
37. JAYNES, R. A. 1969. Handbook of North American nut trees. The Northern Nut Growers Association, Knoxvilie, Tennessee, USA.
38. JOHNSON, L. A., AND D. E. SOLTIS. 1995. Phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences. Annals of the Missouri Botanical Garden 82: 149-175.
39. JORGENSEN, R., AND P. CLUSTER. 1988. Modes and tempos in the evolution of nuclear ribosomal DNA: new characters for evolutionary studies and new markers for genetic and population studies. Annals of the Missouri Botanical Garden 75: 1238-1247.
40. KALM, P. 1770. Travels into North America. Printed by W. Eyers, Warrington, UK.
41. KLUGE, A. G., AND J. S. FARRIS. 1969. Quantitative phyletics and the evolution of Anurans. Systematic Zoology 18: 1-32.
42. KRON, K. A. 1997. Phylogenetic relationships of Rhododendroideae (Ericaceae). American Journal of Botany 84: 973-980.
43. KURTÉN, B. 1973. Early Tertiary land mammals. In A. Hallam [ed.], Atlas of paleogeography. 437-442. Elsevier, Amsterdam, The Netherlands.
44. LEROY, J. F. 1955. Étude sur les Juglandaceae. Mémoires Musee Paris II, Botany 6: 1-246.
45. LES, D. H., et al. 1999. Phylogeny, classification, and floral evolution of water lilies (Nymphaeaceae; Nymphaeales): a synthesis of non-molecular, rbcL, matK, and 18S rDNA data. Systematic Botany 24: 28-46.
46. LIANG, H., AND K. W. HILU. 1996. Application of the matK gene sequences to grass systematics. Canadian Journal of Botany 74: 125-134.
47. MANCHESTER, S. R. 1987. The fossil history of the Juglandaceae. Monographs in Systematic Botany from the Missouri Botanical Garden 21: 1-137.
48. MANNING, W. E. 1952. Juglandaceae. In P. G. Standley and J. A. Steyermark. Flora of Guatemala. Fieldiana: Botany 24, part 3: 352-359.
49. _. 1957. The genus Juglans in Mexico and Central America. Journal of the Arnold Arboretum 38: 121-150.
50. _. 1978. The classification within the Juglandaceae. Annals of the Missouri Botanical Garden 65: 1058-1087.
51. MANOS, P. S., AND K. P. STEELE. 1997. Phylogenetic analysis of "higher" Hamamelidae based on plastid sequence data. American Journal of Botany 84: 1407-1419.
52. MCKENNA, M. C. 1983. Holarctic landmass rearrangement, cosmic events, and Cenozoic terrestrial organisms. Annals of the Missouri Botanical Garden 70: 459-489.
53. MEUSEL, H., E. JAGER, AND E. WEINERT. 1965. Vergleichende Chorologie der Zentraleuropäischen Flora. Fischer Verlag, Jena, Germany.
54. MILLER, R. B. 1976. Wood anatomy and identification of species of Juglans. Botanical Gazette 137: 368-377.
55. MOLLER, M., AND Q. C. B. CRONK. 1997. Origin and relationships of Saintpaulia (Gesneriaecae) based on ribosomal DNA internal transcribed spacer (ITS) sequences. American Journal of Botany 84: 956-965.
56. NUTTALL, T. 1818. The genera of North American plants and a catalogue of the species to the year 1817. Printed for the author by D. Heartt, Philadelphia, Pennsylvania, USA.
57. PURSH, F. 1814. Flora Americae septentrionalis. White, Cochrane, London, UK.
58. RAVEN, P. H., AND D. I. AXELROD. 1974. Angiosperm biogeography and past continental movements. Annals of the Missouri Botanical Garden 61: 539-643.
59. SAVIN, S. M. 1977. The history of the Earth's surface temperature during the past 100 million years. Annual Review of Earth and Planetary Sciences 5: 319-355.
60. SCHNABEL, A., AND J. F. WENDEL. 1998. Cladistic biogeography of Gleditsia (Leguminosae) based on ndhF and rp116 chloroplast gene sequences. American Journal of Botany 85: 1753-1765.
61. SMITH, J. E, AND J. J. DOYLE. 1995. A cladistic analysis of chloroplast DNA restriction site variation and morphology for the genera of the Juglandaceae. American Journal of Botany 82: 1163-1172.
62. STANFORD, A. M., R. HARDEN, AND C. R. PARKS. 1997. Biogeography and phylogeny of Castanea, Fagus, and Juglans based on matK and ITS sequence data. American Journal of Botany 84(6 Supplement): 234 (Abstract).
63. STEELE, K. P., AND R. VILGALYS. 1994. Phylogenetic analysis of Polemoniaceae using nucleotide sequences of the plastid gene matK. Systematic Botany 19: 126-142.
64. SWOFFORD, D. L. 1993. PAUP: Phylogenetic analysis using parsimony, version 3.1. Illinois Natural History Survey, Champaign, Illinois. USA.
65. THIEDE, J. 1980. Palaeo-oceanography, margin stratigraphy and paleophysiography of the Tertiary North Atlantic and Norwegian-Greenland seas. Philosophical Transcripts of the Royal Society, London, Series A 294: 177-185.
66. THUNBERG, C. P. 1784. Flora Japonica. I. G. Mulleriano, Leipzig, Germany.
67. TIFFNEY, B. H. 1985a. Perspectives on the origin of the floristic similarity between eastern Asia and eastern North America. Journal of the Arnold Arboretum 66: 73-94.
68. _. 1985b. The Eocene north Atlantic land bridge: its importance in Tertiary and modern phytogeography of the northern hemisphere. Journal of the Arnold Arboretum 66: 243-273.
69. VAIL, P. R., R. M. MITCHUM, AND S. THOMPSON. 1977. Seismic stratigraphy and global changes of sea level, 4. Global cycles of relative changes of sea level. In C. E. Payton [ed.], Seismic stratigraphy-applications to hydrocarbon exploration. American Association of Petroleum Geologists, Memoir 26: 83-97.
70. VARGAS, P., C. M. MORTON, AND S. L. JURY. 1999. Biogeographic patterns in Mediterranean and Macaronesian species of Saxifraga (Saxifragaceae) inferred from phylogenetic analyses of ITS sequences.
71. WEN, J., AND E. A. ZIMMER. 1995. Phylogeography of Panax L. (the ginseng genus, Araliaceae): Inferences from ITS sequences of nuclear ribosomal DNA. Molecular Phylogenetics and Evolution 6: 167-177.
72. WHITE, T. J., T. BRUNS, S. LEE, AND J. TAYLOR. 1990. Amplifications and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In M. Innis, D. Gelfand, J. Sninsky, and T. White [eds.], PCR protocols: a guide to methods and applications, 315-322. Academic Press, San Diego. California, USA.
73. WHITTEMORE, A. T., AND D. E. STONE. 1997. Juglans. In Flora of North America north of Mexico, vol. 3, Magnoliophyta: Magnoliidae and Hamamelidae, 425-428. Oxford University Press, New York. New York, USA.
74. WILKEN, D. H. 1993. Juglandaceae. In J. C. Hickman [ed.], The Jepson manual: higher plants of California. University of California Press, Berkeley, California, USA.
75. WOLFE, J. A. 1978. A paleobotanical interpretation of Tertiary climates in the northern hemisphere. American Scientist 66: 694-703.
76. WOODRUFF, J. G. 1979. Tree nuts: production, processing, products. AVI Publishing, Westport, Connecticut, USA.
77. YASUI, Y., AND O. OHNISHI. 1998. Interspecific relationships in Fagopyrum (Polygonaceae) revealed by the nucleotide sequences of rbcL and accD genes and their intergenic region. American Journal of Botany 85: 1134-1142.
78. YURTSEV, B. A. 1972. Phytogeography of northeastern Asia and the problem of transberingian floristic interrelations. In A. Graham [ed.], Floristics and paleofloristics and Asia and eastern North America, 19-54. Elsevier, Amsterdam, The Netherlands.