Linkage group alignment of sorghum RFLP maps using a RIL mapping population

Genome

Volumn 43, Issue 2, 2000, Pages 240-249

  Subudhi, Prasanta K ^a   Nguyen, Henry T ^a  

^a TEXAS TECH UNIVERSITY   (United States)

Author keywords

Linkage maps; Molecular markers; Sorghum bicolor

Indexed keywords

COMPLEMENTARY DNA; GENE LOCUS; GENETIC CROSS; GENETIC IMPROVEMENT; GENETIC MARKER; GENETIC SELECTION; INBRED LINE; LINKAGE GROUP; MAIZE; MOLECULAR MAPPING; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE ALIGNMENT; SORGHUM BICOLOR;

EMBRYOPHYTA; HORDEUM VULGARE SUBSP. VULGARE; SACCHARUM HYBRID CULTIVAR; SORGHUM BICOLOR; ZEA MAYS;

EID: 0034076214     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g99-112     Document Type: Article

References (30)

1. Arumuganathan, K., and Earle, E.D. 1991. Nuclear DNA content of some important species. Plant Mol. Biol. Rep. 9: 208-218.
2. Bennetzen, J.L., SanMiguel, P., Chen, M., Tikhonov, A., Francki, M., and Avranova, Z. 1998. Grass genomes. Proc. Natl. Acad. Sci. U.S.A. 95: 1975-1978.
3. Binelli, G., Gianfranceschi, L., Pe, M.E., Taramino, G., Busso, C., Stenhouse, J., and Ottaviano, E. 1992. Similarity of maize and sorghum genomes as revealed by maize RFLP probes. Theor. Appl. Genet. 84: 10-16.
4. Boivin, K., Deu, M., Rami, J-F., Trouche, G., and Hamon, P. 1999. Towards a saturated sorghum map using RFLP and AFLP markers. Theor. Appl. Genet. 98: 320-328.
5. Börner, A., and Korzun, V. 1998. A consensus linkage map of rye (Secale cereale L.) including 374 RFLPs, 24 isozymes and 15 gene loci. Theor. Appl. Genet. 97: 1279-1288.
6. x S. propinquum, suitable for high-density mapping, suggests ancestral duplication of Sorghum chromosomes or chromosomal segments. Theor. Appl. Genet. 87: 925-933.
7. Crasta, O.R., Xu, W., Rosenow, D.T., Mullet, J.E., and Nguyen, H.T. 1999. Mapping of post flowering drought resistance traits in grain sorghum: Association of QTLs influencing premature senescence and maturity. Mol. Gen. Genet. 262: 579-588.
8. Devos, K., and Gale, M.D. 1997. Comparative genetics in the grasses. Plant Mol. Biol. 35: 3-15.
9. Dufour, P., Deu, M., Grivet, L., D'Hont, A., Paulet, F., Bouet, A., Lanaud, C., Glaszmann, J.C., and Hamon, P. 1997. Construction of a composite sorghum genome map and comparison with sugarcane, a related complex polyploid. Theor. Appl. Genet. 94: 409-418.
10. Freyre, R., Skroch, P.W., Geffroy, V., Adam-Blondon, A.F., Shirmohamadali, A., Johnson, W. C., Llaca, V., Nodari, R.O., Pereira, P.A., Tsai, S.M., Tohme, J., Dron, M., Nienhuis, J., Vallejos, C.E., and Gepts, P. 1998. Towards an integrated linkage map of common bean. 4. Development of a core linkage map and alignment of RFLP maps. Theor. Appl. Genet. 97: 847-856.
11. Guimaraes, C.T., Sills, G.R., and Sobral, B.W.S. 1997. Comparative mapping of Andropogoneae: Saccharum L. (sugarcane) and its relation to sorghum and maize. Proc. Natl. Acad. Sci. U.S.A. 94: 14261-14266.
12. Hu, J., Sadowski, J., Osborn, T.C., Landry, B.S., and Quiros, C.F. 1998. Linkage group alignment from four independent Brassica oleracea RFLP maps. Genome, 41: 226-235.
13. Hulbert, S.H., Richter, T.E., Axtell, J.D., and Bennetzen, J.L. 1990. Genetic mapping and characterization of sorghum and related crops by means of maize DNA probes. Proc. Natl. Acad. Sci. U.S.A. 87: 4251-4255.
14. Kilian, A., Kudrna, D.A., Kleinhofs, A., Yano, M., Kurata, N., Steffenson, B., and Sasaki, T. 1995. Rice-barley synteny and its application to saturation mapping of the barley Rpg1 region. Nucleic Acids Res. 23: 2729-2733.
15. Kong, L., Dong, J., and Hart, G. 1997. Linkage mapping of simple sequence repeat loci in Sorghum bicolor L. Moench. In Plant & Animal Genome V. The International Conference on the Status of Plant and Animal Genome Research, 12-16 January 1997, San Diego, Calif, p. 100. (Abstr.)
16. Lander, E.S., Green, P., Abrahamson, A., Barlow, A., Daly, W.J., Lincoln, S. E., and Newburg, L. 1987. MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1: 174-181.
17. Lin, Y.R., Schertz, K.F., and Paterson, A.H. 1995. Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population. Genetics, 140: 391-411.
18. Melake-Berhan, A., Hulbert, S.H., Butler, L.G., and Bennetzen, J.L. 1993. Structural and evolution of the genomes of Sorghum bicolor and Zea mays. Theor. Appl. Genet. 86: 598-604.
19. Ming, R., Liu, S.C. Lin, Y.R., da Silva, J., Wilson, W., Braga, D., van Deynze, A., Wenslaff, T. F., Wu, K.K., Moore, P.H., Burnquist, W., Sorrells, M.E., Irvine, J.E., and Paterson, A.H. 1998. Detailed alignment of Saccharum and Sorghum chromosomes: Comparative organization of closely related diploid and polyploid genomes. Genetics, 150: 1663-1682.
20. Paterson, A.H., Lin, Y.R., Li, Z., Schertz, K.F., Doebly, J.F., Pinson, S.R.M., Liu, S.C., Stansel, J.W., and Irvine, J.E. 1995. Convergent domestication of cereal crops by independent mutations at corresponding genetic loci. Science, 269: 1714-1718.
21. Pereira, M.G., Lee, M., Bramel-Cox, P., Woodman, W., Doebley, J., and Whitkus, R. 1994. Construction of an RFLP map in sorghum and comparative mapping in maize. Genome, 37: 236-243.
22. Qi, X., Stam, P., and Lindhout, P. 1996. Comparison and integration of four barley genetic maps. Genome, 39: 379-394.
23. Ragab, R.A., Dronavalli, S., Saghai Maroof, M.A., and Yu, Y.G. 1994. Construction of sorghum RFLP linkage map using sorghum and maize DNA probes. Genome, 37: 590-594.
24. Sherman, J.D., Fenwick, A.L., Namuth, D.M., and Lapitan, N.L.V. 1995. A barley RFLP map: Alignment of three barley maps and comparison to Gramineae species. Theor. Appl. Genet. 91: 681-690.
25. Tao, Y.Z., Jordan, D.R., Henzell, R.G., and McIntyre, C.L. 1998. Construction of a genetic map in sorghum RIL population using probes from different sources and its comparison with other sorghum maps. Aust. J. Agric. Res. 49: 729-736.
26. Taramino, G., Tarchini, R., Ferrario, S., Lee, M., and Pe', M.E. 1997. Characterization and mapping of simple sequence repeats (SSRs) in Sorghum bicolor. Theor. Appl. Genet. 95: 66-72.
27. Whitkus, R., Doebly, J., and Lee, M. 1992. Comparative genome mapping of sorghum and maize. Genetics, 132: 1119-1130.
28. Wyrich, R., Dressen, U., Brockmann, S., Streubel, M., Chang, C., Qiang, D., Paterson, A.H., and Westhoff, P. 1998. The molecular basis of C4 photosynthesis in sorghum: Isolation, characterization and RFLP mapping of mesophyll and bundle-sheath-specific cDNAs obtained by differential screening. Plant Mol. Biol. 37: 319-335.
29. Xu, G.W., Magill, C.W., Schertz, K.F., and Hart, G.E., 1994. A RFLP linkage map of Sorghum bicolor (L). Moench. Theor. Appl. Genet. 89: 139-145.
30. Xu, W., Crasta, O.R., Rosenow, D.T., Mullet, J.E., and Nguyen, H.T. 1995. Major QTLs for post-flowering drought resistance in grain sorghum. In Plant Genome III, The International Conference on the Status of Plant Genome Research, 15-19 January 1995, San Diego, Calif. P. 22. (Abstr.)