The H2 sensor of Ralstonia eutropha is a member of the subclass of regulatory [NiFe] hydrogenases

Journal of Bacteriology

Volumn 182, Issue 10, 2000, Pages 2716-2724

  Kleihues, Laura ^a,b   Lenz, Oliver ^a   Bernhard, Michael ^a   Buhrke, Thorsten ^a   Friedrich, Bärbel ^a  

^a HUMBOLDT UNIVERSITY   (Germany)

^b MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

HYDROGENASE; IRON; NICKEL; REGULATOR PROTEIN;

ARTICLE; BACTERIAL GROWTH; CONTROLLED STUDY; ELECTRON TRANSPORT; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME BINDING; ENZYME METABOLISM; GENE OVEREXPRESSION; NONHUMAN; PRIORITY JOURNAL; SENSOR; SIGNAL TRANSDUCTION; WAUTERSIA EUTROPHA;

AMINO ACID SEQUENCE; CUPRIAVIDUS NECATOR; CYTOPLASM; DEUTERIUM; HYDROGENASE; MOLECULAR SEQUENCE DATA; NICKEL; OXIDATION-REDUCTION; SEQUENCE HOMOLOGY, AMINO ACID; SOLUBILITY;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; RALSTONIA; WAUTERSIA EUTROPHA;

EID: 0034056389     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.182.10.2716-2724.2000     Document Type: Article

References (54)

1. Adams, M. W. 1994. Biochemical diversity among sulfur-dependent, hyperthermophilic microorganisms. FEMS Microbiol. Rev. 15:261-277.
2. Albracht, S. P. 1994. Nickel hydrogenases: in search of the active site. Biochim. Biophys. Acta 1188:167-204.
3. Bernhard, M., B. Friedrich, and R. A. Siddiqui. 2000. Ralstonia eutropha TF93 is blocked in tat-mediated protein export. J. Bacteriol. 182:581-588.
4. Bernhard, M., B. Benelli, A. Hochkoeppler, D. Zannoni, and B. Friedrich. 1997. Functional and structural role of the cytochrome b subunit of the membrane-bound hydrogenase complex of Alcaligenes eutrophus H16. Eur. J. Biochem. 248:179-186.
5. Bernhard, M., E. Schwartz, J. Rietdorf, and B. Friedrich. 1996. The Alcaligenes eutrophus membrane-bound hydrogenase gene locus encodes functions involved in maturation and electron transport coupling. J. Bacteriol. 178: 4522-4529.
6. Black, L. K., C. Fu, and R. J. Maier. 1994. Sequence and characterization of hupU and hupV genes of Bradyrhizobium japonicum encoding a possible nickel-sensing complex involved in hydrogenase expression. J. Bacteriol. 176:7102-7106.
7. Brim, H., M. Heyndrickx, P. de Vos, A. Wilmotte, D. Springael, H. G. Schlegel, and M. Mergeay. 1999. Amplified rDNA restriction analysis and further genotypic characterisation of metal-resistant soil bacteria and related facultative hydrogenotrophs. Syst. Appl. Microbiol. 22:258-268.
8. Cramm, R., A. Pohlmann, and B. Friedrich. 1999. Purification and characterization of the single-component nitric oxide reductase from Ralstonia eutropha H16. FEBS Lett. 460:6-10.
9. Deckert, G., P. V. Warren, T. Gaasterland, W. G. Young, A. L. Lenox, D. E. Graham, R. Overbeek, M. A. Snead, M. Keller, M. Aujay, R. Huber, R. A. Feldman, J. M. Short, G. J. Olsen, and R. V. Swanson. 1998. The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature 392: 353-358.
10. Degen, O., M. Kobayashi, S. Shimizu, and T. Eitinger. 1999. Selective transport of divalent cations by transition metal permeases: the Alcaligenes eutrophus HoxN and the Rhodococcus rhodochrous NhlF. Arch. Microbiol. 171: 139-145.
11. Dernedde, J., T. Eitinger, N. Patenge, and B. Friedrich. 1996. hyp gene products in Alcaligenes eutrophus are part of a hydrogenase maturation system. Eur. J. Biochem. 235:351-358.
12. Eberz, G., and B. Friedrich. 1991. Three trans-acting regulatory functions control hydrogenase synthesis in Alcaligenes eutrophus. J. Bacteriol. 173: 1845-1854.
13. Eberz, G., C. Hogrefe, C. Kortlüke, A. Kamienski, and B. Friedrich. 1986. Molecular cloning of structural and regulatory hydrogenase genes (hox) of Alcaligenes eutrophus H16. J. Bacteriol. 168:636-641.
14. Eitinger, T., and B. Friedrich. 1991. Cloning, nucleotide sequence, and heterologous expression of a high-affinity nickel transport gene from Alcaligenes eutrophus. J. Biol. Chem. 266:3222-3227.
15. Elsen, S., A. Colbeau, J. Chabert, and P. M. Vignais. 1996. The hupTUV operon is involved in negative control of hydrogenase synthesis in Rhodobacter capsulatus. J. Bacteriol. 178:5174-5181.
16. Elsen, S., P. Richaud, A. Colbeau, and P. M. Vignais. 1993. Sequence analysis and interposon mutagenesis of the hupT gene, which encodes a sensor protein involved in repression of hydrogenase synthesis in Rhodobacter capsulatus. J. Bacteriol. 175:7404-7412.
17. Fox, J. D., Y. He, D. Shelver, G. P. Roberts, and P. W. Ludden. 1996. Characterization of the region encoding the CO-induced hydrogenase of Rhodospirillum rubrum. J. Bacteriol. 178:6200-6208.
18. Friedrich, B., and E. Schwartz. 1993. Molecular biology of hydrogen utilization in aerobic chemolithotrophs. Annu. Rev. Microbiol. 47:351-383.
19. Friedrich, C. G., B. Bowien, and B. Friedrich. 1979. Formate and oxalate metabolism in Alcaligenes eutrophus. J. Gen. Microbiol. 115:185-192.
20. Gomelsky, M., and S. Kaplan. 1995. Isolation of regulatory mutants in photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1 and partial complementation of a PrrB mutant by the HupT histidine-kinase. Microbiology 141:1805-1814.
21. Gross, R., J. Simon, F. Theis, and A. Kröger. 1998. Two membrane anchors of Wolinella succinogenes hydrogenase and their function in fumarate and polysulfide respiration. Arch. Microbiol. 170:50-58.
22. Kim, H., and R. J. Maier. 1990. Transcriptional regulation of hydrogenase synthesis by nickel in Bradyrhizobium japonicum. J. Biol. Chem. 265:18729-18732.
23. Kömen, R., K. Schmidt, and B. Friedrich. 1992. Hydrogenase mutants of Alcaligenes eutrophus H16 show alterations in the electron transport system. FEMS Microbiol. Lett. 75:173-178.
24. Kortlüke, C., K. Horstmann, E. Schwartz, M. Rohde, R. Binsack, and B. Friedrich. 1992. A gene complex coding for the membrane-bound hydrogenase of Alcaligenes eutrophus H16. J. Bacteriol. 174:6277-6289.
25. 2 sensing in Alcaligenes eutrophus. Proc. Natl. Acad. Sci. USA 95:12474-12479.
26. Lenz, O., A. Strack, A. Tran-Beleke, and B. Friedrich. 1997. A hydrogen-sensing system in transcriptional regulation of hydrogenase gene expression in Alcaligenes species. J. Bacteriol. 179:1655-1663.
27. Lenz, O., E. Schwartz, J. Dernedde, M. Eitinger, and B. Friedrich. 1994. The Alcaligenes eutrophus H16 hoxX gene participates in hydrogenase regulation. J. Bacteriol. 176:4385-4393.
28. Lowry, O. H., N. J. Rosebrough, A. L. Farr, and R. J. Randall. 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193:265-275.
29. Maier, T., and A. Böck. 1996. Nickel incorporation into hydrogenases, p. 173-192. In R. P. Hausinger, G. L. Eichhorn, and L. G. Marzilli (ed.), Advances in inorganic biochemistry: mechanisms of metallocenter assembly. VHC Publishers, Inc., New York, N.Y.
30. Massanz, C., S. Schmidt, and B. Friedrich. 1998. Subforms and in vitro reconstitution of the NAD-reducing hydrogenase of Alcaligenes eutrophus. J. Bacteriol. 180:1023-1029.
31. 2-activating subunit, HoxH, directs maturation of the NAD-reducing hydrogenase in Alcaligenes eutrophus. Eur. J. Biochem. 245:441-448.
32. Meuer, J., S. Bartoschek, J. Koch, A. Künkel, and R. Hedderich. 1999. Purification and catalytic properties of Ech hydrogenase from Methanosarcina barkeri. J. Biochem. 265:325-335.
33. Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
34. Nivière, V., S.-L. Wong, and G. Voordouw. 1992. Site-directed mutagenesis of the hydrogenase signal peptide consensus box prevents export of a β-lactamase fusion protein. J. Gen. Microbiol. 138:2173-2183.
35. Pierik, A. J., M. Schmelz, O. Lenz, B. Friedrich and S. P. J. Albracht. 1998. Characterization of the active site of a hydrogen sensor from Alcaligenes eutrophus. FEBS Lett. 438:231-235.
36. Probst, I., and H. G. Schlegel. 1976. Respiratory components and oxidase activities in Alcaligenes eutrophus. Biochim. Biophys. Acta 440:412-428.
37. 2 uptake membrane-bound NiFe-hydrogenase from the carboxidotrophic bacterium Oligotropha carboxidovorans. J. Bacteriol. 179:6053-6060.
38. Schink, B., and H. G. Schlegel. 1979. The membrane-bound hydrogenase of Alcaligenes eutrophus. I. Solubilization, purification and biochemical properties. Biochem. Biophys. Acta 567:315-324.
39. Schneider, K., H. G. Schlegel, R. Cammack, and D. O. Hall. 1979. The iron sulfur centers of soluble hydrogenase from Alcaligenes eutrophus. Biochim. Biophys. Acta 578:445-461.
40. Schneider, K., and H. G. Schlegel. 1976. Purification and properties of the soluble hydrogenase from Alcaligenes eutrophus H16. Biochim. Biophys. Acta 452:66-80.
41. Schwartz, E., T. Buhrke, U. Gerischer, and B. Friedrich. 1999. Positive transcriptional feedback controls hydrogenase expression in Alcaligenes eutrophus H16. J. Bacteriol. 181:5684-5692.
42. Schwartz, E., U. Gerischer, and B. Friedrich. 1998. Transcriptional regulation of Alcaligenes eutrophus hydrogenase genes. J. Bacteriol. 180:3197-3204.
43. Simon, R., U. Priefer, and A. Pühler. 1983. A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in gramnegative bacteria. Bio/Technology 1:717-743.
44. Taylor, B. L., and I. B. Zhulin. 1999. PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol. Mol. Biol. Rev. 63:479-506.
45. Thiemermann, S., J. Dernedde, M. Bernhard, W. Schröder, C. Massanz, and B. Friedrich. 1996. Carboxy-terminal processing of the soluble, NAD-reducing hydrogenase of Alcaligenes eutrophus requires the hoxW gene product. J. Bacteriol. 178:2368-2374.
46. Towbin, H., T. Staehelin, and J. Gordon. 1979. Electrophoretic transfer of protein from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc. Natl. Acad. Sci. USA 76:4350-4357.
47. Tran-Betcke, A., U. Warnecke, C. Böcker, C. Zaborosch, and B. Friedrich. 1990. Cloning and nucleotide sequences of the genes for the subunits of NAD-reducing hydrogenase of Alcaligenes eutrophus H16. J. Bacteriol. 172: 2920-2929.
48. Van Soom, C., I. Lerouge, J. Vanderleyden, T. Ruiz-Argueso, J. M. Palacios. 1999. Identification and characterization of hupT, a gene involved in negative regulation of hydrogen oxidation in Bradyrhizobium japonicum. J. Bacteriol. 181:5085-5089.
49. 2: evidence from the H-D reaction. J. Bacteriol. 179:290-292.
50. Volbeda, A., M.-H. Charon, C. Piras, E. C. Hatchikan, M. Frey, and J. C. Fontecilla-Camps. 1995. Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigas. Nature 373:580-587.
51. Voordouw, G., N. K. Menon, J. Le Gall, E. S. Choi, H. D. Peck, and A. E. Przybyla. 1989. Analysis and comparison of nucleotide sequences encoding the genes for [NiFe] and [NiFeSe] hydrogenases from Desulfovibrio gigas and Desulfovibrio baculatus. J. Bacteriol. 171:2894-2899.
52. Wolf, I., T. Buhrke, J. Dernedde, A. Pohlmann, and B. Friedrich. 1998. Duplication of hyp genes involved in maturation of [NiFe] hydrogenases in Alcaligenes eutrophus H16. Arch. Microbiol. 170:451-459.
53. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
54. Zimmer, D., E. Schwartz, A. Tran-Betcke, P. Gewinner, and B. Friedrich. 1995. Temperature tolerance of hydrogenase expression in Alcaligenes eutrophus is conferred by a single amino acid exchange in the transcriptional activator HoxA. J. Bacteriol. 177:2373-2380.