QTL analysis of two maize inbred line crosses

Maydica

Volumn 45, Issue 1, 2000, Pages 1-12

  Kraja, A T ^a   Dudley, J W ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

Composite interval mapping; QTL; QTL x environment interaction; RFLP; Yield; Zea mays L.

Indexed keywords

DNA PROBE; GENETIC CROSS; GENETIC DIVERSITY; GENETIC TRAIT; GENOTYPE ENVIRONMENT INTERACTION; GRAIN YIELD; INBRED LINE; PLANT HEIGHT; QUANTITATIVE TRAIT; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

EID: 0034032473     PISSN: 00256153     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (48)

1. AUSTIN D.F., M. LEE, 1998 Detection of quantitative trait loci for grain yield and yield components in maize across generations in stress and nonstress environments. Crop Sci. 38: 1296-1308.
2. BASTEN C.J., B.S. WEIR, Z.B. ZENG, 1997 QTL Cartographer: A reference manual and tutorial for QTL mapping. Department of Statistics, North Carolina State University, Raleigh, NC. In ftp: //statgen.ncsu.edu/pub/qtlcart/
3. BECKMAN J., M. SOLLER, 1988 Detection of linkage between marker loci and loci affecting quantitative traits in crosses between segregating populations. Theoret. Appl. Genet. 76: 228-236.
4. BOHN M., M. KHAIRALLAH, D. GONZALEZ-DE-LEON, D.A. HOISINGTON, H.F. UTZ, J.A. DEUTSCH, D.C. JEWELL, J.A. MIHM, A.E. MELCHINGER, 1996 QTL mapping in tropical maize: I. Genomic regions affecting leaf feeding resistance to sugarcane borer and other traits. Crop Sci. 36: 1352-1361.
5. BYRNE P.F., M.D. MCMULLEN, M.E. SNOOK, T.A. MUSKET, J.M. THFURI, N.W. WIDSTROM, B.R. WISEMAN, E.H. COE, 1996 Quantitative trait loci and metabolic pathways: genetic control of the concentration of maysin, a corn earworm resistance factor, in maize silks. Proc. Natl. Acad. Sci. USA. V. 93(17): 8820-8825.
6. CARMER S.G., D.J. KRATZKE, 1988 A user's guide to PCAGRON; Personal computer FORTRAN programs for the statistical design and analysis of agronomic research experiments. Dep. of Agronomy, Univ. of Illinois, State Lab. Tech. Rep. 29. Univ. of Illinois, Urbana.
7. COCKERHAM C.C., Z.-B. ZENG, 1996 Design III analyses of reciprocal crosses. Genetics 143: 1437-1456.
8. DUDLEY J.W., 1993 Molecular markers in plant improvement: manipulation of genes affecting quantitative traits. Crop Sci. 33: 660-668.
9. DUDLEY J.W., 1997 Quantitative genetics and plant breeding. In Advances in Agronomy Vol. 59, p. 8.
10. FEINBERG A.P., B. VOGELSTEIN, 1984 A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 137: 266-267.
11. FREUND R., W. WILLSON, 1993 Statistical Methods. p. 192. Acad. Press, Boston.
12. GERDES J.T., W.F. TRACY, J.G. COOR, J.L. GEADELMANN, M.K. VINEY, 1993 Compilation of North American maize breeding germplasm. Crop Science Society of America, 202 p. Madison.
13. GROH S., D. GONZALEZ-DE-LEÓN, M.M. KHAIRALLAH, C. JIANG, D. BERGVINSON, M. BOHN, D.A. HOISINGTON, A. E. MELCHINGER, 1998 QTL mapping in tropical maize: III. Genomic regions for resistance to Diatraea spp. and associated traits in two RIL populations. Crop Sci. 38: 1062-1072.
14. HALEY C., S. KNOTT, 1992 A simple regression method for mapping quantitative trait loci in the line crosses using flanking markers. Heredity. 69: 315-324.
15. HALLAUER A.R., J.B. MIRANDA, FO, 1981 Quantitative genetics in maize breeding. Ames.
16. HOESCHELE I., P. UIMARI, F. GRIGNOLA, Q. ZHANG, K GAGE, 1997 Advances in statistical methods to map quantitative trait loci in outbred populations. Genetics. 147: 1445-1457.
17. JANSEN R., P. STAM, 1994 High resolution of quantitative traits into multiple loci via interval mapping. Genetics. 136: 1447-1455.
18. LANDER E., D. BOTSTEIN, 1989 Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics. 121: 185-199.
19. rd edition.
20. LITTELL R.C., G.A. MILLIKEN, W.W. STROUP, R.D. WOLFINGER, 1996 SAS system for mixed models. SAS Institute Inc. NC.
21. LIU B., 1998 Statistical genomics: linkage, mapping, and QTL analysis. CRC Press.
22. LÜBBERSTEDT T., A.E. MELCHINGER, C. SCHÖN, H.F. UTZ, D. KLEIN, 1997 QTL mapping in testcrosses of European Flint lines of maize: I Comparison of different testers for forage yield traits. Crop Sci. 37: 921-931.
23. LYNCH M., B. WALSH, 1998 Genetics and analysis of quantitative traits. Sinauer Associates, Inc., Sunderland, Massachusetts.
24. MAIZE DATABASE, 1999 MaizeDB ANCHORS. In http://ww.agron. missouri.edu/UMCCoreMarkers.html.
25. MANLY K., R. CUDMORE, 1998 Map Manager. A program for genetic mapping. (Software). New York. http://mcbio.med.buffalo.ed/mapmg.html.
26. MELCHINGER A.E., H.F. UTZ, C.C. SCHÖN, 1998 Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects. Genetics, Vol. 149, pp. 383-103.
27. OTT J., 1992 Analysis of human genetic linkage. Pp. 36-38. The Johns Hopkins Univ, Press. Maryland.
28. OTT, J., 1995 How do you compute a lod score? Nature Genetics. 11: 354-355.
29. REBAI A., 1997 Comparison of methods for regression interval mapping in QTL analysis with non-normal traits. Genet. Res., Camb. 69: 69-74. Cambridge.
30. SAGHAI MAROOF M.A., K.M. SOLLMAN, R.A. JORGENSEN, R.W. ALLARD, 1984 Ribosomal DNA specer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. USA. 81: 8014-8018.
31. SAS INSTITUTE, 1990 SAS/STAT User's Guide. Vol. 2., 891-996. NC.
32. SAX K., 1923 The association of size differences with sead-coat pattern and pigmentation in Phaseolus vulgaris. Genetics 8: 552-560.
33. SCHON C.C., A.E. MELCHINGER, J. BOPPENMAIER, E. BRUNKLAUS-JUNG, R.G. HERRMANN, J.F. SETTZER, 1991 RFLP mapping in maize: Quantitative trait loci affecting testcross performance of elite European flint lines. Crop Sci. 34: 378-389.
34. SORRELS M., W. WILSON, 1997 Direct classification and selection of superior alleles for crop improvement. Crop Sci. 37: 691-697.
35. STUBER C.W., 1995 Mapping and manipulating quantitative traits in maize. Trend Genet. 11: 477-481.
36. STUBER C.W., 1997 Marker-assisted selection in maize. Animal Biotechnology. 8: 91-97.
37. STUBER, C.W., S.E. LINCOLN, D.W. WOLFF, T. HELENTJARIS, E.S. LANDER, 1992 Identification of genetic factors contributing to heterosis in a hybrid from two elite inbred lines using molecular markers. Genetics 132: 823-839.
38. TANKSLEY S., 1993 Mapping polygenes. Ann. Rev. Genet. 27: 205-231.
39. TANKSLEY S.D., M. NAGAL, G. MARTIN, 1995 Chromosome landing: a paradigm for map-based gene cloning in plants with large genomes. Trend Genet. 11: 63-68.
40. TINKER N., D. MATHER, 1995 Methods for QTL analysis with progeny replicated in multiple environments. In: J. Quant. Trait Loci. Vol. 1. In http://probe.nalusda.gov:8000/otherdocs/jqtl/jqtl 1995-01/jqtl15.html.
41. UTZ H.F., A.E. MELCHINGER, 1995 PLABQTL, manual, version 1 and 1.1, Stuttgart.
42. UTZ H.F., A.E. MELCHINGER, 1996 PLABQTL: A program for composite interval mapping of QTL. J. Quant. Trait Loci. Vol. 2. In http://probe.nalusda.gov:800/otherdocs/jqtl/jqtl1996-01/utz.html.
43. VEIDBOOM L.R., M. LEE, 1996a Genetic mapping of quantitative trait loci in maize in stress and nonstress environments: I. Grain yield and yield components. Crop Sci. 36: 1310-1319.
44. VELDBOOM L.R., M. LEE, 1996b Genetic mapping of quantitative trait loci in maize in stress and nonstress environments: II. Plant height and flowering. Crop Sci. 36: 1320-1327.
45. WELLER J.L., M. SOLLER, A. KOROL, 1997 Detection of quantitative trait loci and marker-assisted selection. Course notes and Abstracts. Jerusalem.
46. ZENG Z., 1994 Precision mapping of quantitative trait loci. Genetics. 136: 1457-1468.
47. ZENG Z., 1997 Combining information from data in mapping analysis: use of multiple markers and mulliple traits. Animal Biotechnology. 8: 145-150.
48. ZHANG X., J. MOSJIDIS, Z. HU., 1992 Methods for detection and estimation of linkage between a marker locus and quantitative trait loci. Plant Breeding. 109: 35-39.