p62, a novel Xenopus laevis component of box C/D snoRNPs

RNA

Volumn 6, Issue 3, 2000, Pages 391-401

  Filippini, Daniela ^a   Bozzoni, Irene ^a   Caffarelli, Elisa ^a,b  

^a SAPIENZA UNIVERSITY OF ROME   (Italy)

^b Ctro Acidi Nucleici Cons Naz D   (Italy)

Author keywords

Guide snoRNAs; Intron encoded snoRNAs; RNA processing; Small nucleolar RNAs; SnoRNA stability; Xenopus oocytes

Indexed keywords

FIBRILLARIN; SMALL NUCLEAR RIBONUCLEOPROTEIN; SMALL NUCLEAR RNA;

ARTICLE; BINDING SITE; INTRON; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN CROSS LINKING; PROTEIN STABILITY; PROTEIN TRANSPORT; RNA PROCESSING; XENOPUS LAEVIS;

ANIMALS; CONSERVED SEQUENCE; INTRONS; MOLECULAR WEIGHT; NUCLEIC ACID CONFORMATION; OOCYTES; RIBONUCLEOPROTEINS, SMALL NUCLEOLAR; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, SMALL NUCLEAR; RNA-BINDING PROTEINS; XENOPUS LAEVIS;

XENOPUS LAEVIS;

EID: 0034019342     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S135583820099174X     Document Type: Article

References (43)

1. Bachellerie JP, Cavaillé J. 1997. Guiding ribose methylation of RNA. Trends Biochem Sci 22:257-261.
2. Bachellerie JP, Michot B, Nicoloso M, Balakin A, Ni J, Fournier MJ. 1995. Antisense snoRNAs: A family of nucleolar RNAs with long complementarities to rRNA. Trends Biochem Sci 20:261-264.
3. Balakin AG, Smith L, Fournier MJ. 1996. The RNA world of the nucleolus: Two major families of small RNAs defined by different box elements with related function. Cell 56:823-834.
4. Baserga SJ, Yang XW, Steitz JA. 1991. An intact box C sequence in the U3 snRNA is required for binding of fibrillarin, the protein common to the major family of nucleolar snRNPs. EMBO J 10:2645-2651.
5. Borovjagin AV, Gerbi SA. 1999. U3 small nucleolar RNA is essential for cleavage at sites 1, 2 and 3 in pre-rRNA and determines which rRNA processing pathway is taken in Xenopus oocytes. J Mol Biol 286:1347-1363.
6. Caffarelli E, Arese M, Santoro B, Fragapane P, Bozzoni I. 1994. In vitro study of processing of the intron-encoded U16 small nucleolar RNA in Xenopus laevis. Mol Cell Biol 74:2966-2974.
7. Caffarelli E, Fatica A, Prislei S, De Gregorio E, Fragapane P, Bozzoni I. 1996. Processing of the intron-encoded U16 and U18 snoRNAs: The conserved C and D boxes control both the processing reaction and the stability of the mature snoRNA. EMBO J 15:1121-1131.
8. Caffarelli E, Losito M, Giorgi C, Fatica A, Bozzoni I. 1998. In vivo identification of nuclear factors interacting with the conserved elements of box C/D small nucleolar RNAs. Mol Cell Biol 18: 1023-1028.
9. Cavaillé J, Nicoloso M, Bachellerie JP. 1996. Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides. Nature 383:732-735.
10. Enright CA, Maxwell ES, Eliceiri GL, Sollner-Webb B. 1996. 5′ ETS rRNA processing facilitated by four small RNAs: U14, E3, U17, and U3. RNA 2:1094-1099.
11. Fragapane P, Prislei S, Michienzi A, Caffarelli E, Bozzoni I. 1993. A novel small nucleolar RNA (U16) is encoded inside a ribosomal protein intron and originates by processing of the pre-mRNA. EMBO J 7: 2921-2928.
12. Ganot P, Bortolin ML, Kiss T. 1997. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89:799-809.
13. Gautier T, Berges T, Tollervey D, Hurt E. 1997. Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1 p and are required for ribosome biogenesis. Mol Cell Biol 17:7088-7098.
14. Hughes JMX, Ares MJ. 1991. Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA. EMBO J 10:4231-4239.
15. Jansen RP, Hurt EC, Kern H, Lehtonen H, Carmo-Fonseca M, Lapeyere B, Tollervey D. 1991. Evolutionary conservation of the human protein fibrillarin and its functional expression in yeast. J Cell Biol 113:715-727.
16. Jarmolowski A, Zagorski J, Li HV, Fournier MJ. 1990. Identification of essential elements in U14 RNA of Saccharomyces cerevisiae. Mol Cell Biol 9:4503-4509.
17. Kiss-László Z, Henry Y, Bachellerie J-P, Caizergues-Ferrer M, Kiss T. 1996. Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs. Cell 85:1077-1088.
18. Kiss-László Z, Henry Y, Kiss T. 1998. Sequence and structural elements of methylation guide snoRNAs essential for site-specific ribose methylation of pre-rRNA. EMBO J 17:797-807.
19. Lafontaine DLJ, Tollervey D. 1999. Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability. RNA 5:455-467.
20. Lange TS, Borovjagin A, Maxwell ES, Gerbi S. 1998. Conserved boxes C and D are essential nucleolar localization elements of U14 and U8 snoRNAs. EMBO J 17:3176-3187.
21. Maden BEH. 1996. Click here for methylation. Nature 383:675-676.
22. Maden BEH, Hughes JMX. 1997. Eukaryotic ribosomal RNA: The recent excitement in the nucleotide modification problem. Chromosoma 105:391-400.
23. Maxwell ES, Fournier MJ. 1995. The small nucleolar RNAs. Annu Rev Biochem 35:897-934.
24. Morissey J, Tollervey D. 1993. Yeast snR30 is a small nucleolar RNA required for 18 rRNA synthesis. Mol Cell Biol 13:2469-2477.
25. Narayanan A, Speckmann W, Terns R, Terns MP. 1999. Role of the box C/D motif in localization of small nucleolar RNAs to coiled bodies and nucleoli. Mol Biol Cell 10:2131-2147.
26. Nicoloso M, Caizergues-Ferrer M, Michot B, Azum MC, Bachellerie JP. 1994. U20, a novel small nucleolar RNA, is encoded in an intron of the nucleolin gene in mammals. Mol Cell Biol 14:5766-5776.
27. Nicoloso M, Qu LH, Michot B, Bachellerie JP. 1996. Intron-encoded, antisense small nucleolar RNAs: The characterization of nine novel species points to their direct role as guides for the 2́-O-ribose methylation of rRNA. J Mol Biol 260:178-195.
28. Peculis BA, Steitz JA. 1994. Sequence and structural elements critical for U8 snRNP function in Xenopus oocytes are evolutionary conserved. Genes & Dev 8:2241-2255.
29. Prislei S, Sperandio S, Fragapane P, Caffarelli E, Presutti C, Bozzoni I. 1992. The mechanisms controlling ribosomal protein L1 premRNA splicing are maintained in evolution and rely on conserved intron sequences. Nucleic Acids Res 20:4473-4479.
30. Salim M, Maden BEH. 1981. Nucleotide sequence of Xenopus laevis 18S ribosomal RNA inferred from gene sequence. Nature 291: 205-208.
31. Samarsky DA, Fournier MJ, Singer RH, Bertrand S. 1998. The snoRNA box C/D motif directs nucleolar targeting and also couples snoRNA synthesis and localization. EMBO J 13:3747-3757.
32. Terns MP, Grimm C, Lund E, Dahlberg JE. 1995. A common maturation pathway for small nucleolar RNAs. EMBO J 14:4860-4871.
33. Tollervey D. 1996. Small nucleolar RNAs guide ribosomal RNA methylation. Science 273:1056-1057.
34. Tollervey D, Kiss T. 1997, Function and synthesis of small nucleolar RNAs. Curr Opin Cell Biol 9:337-342.
35. Tyc K, Steitz JA. 1989. U3, U8, and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus, EMBO J 8:3113-3119.
36. Tycowski KT, Shu MD, Steitz JA. 1993. A small nucleolar RNA is processed from an intron of the human gene encoding ribosomal protein S3. Genes & Dev 7:1176-1190.
37. Tycowski KT, Shu MD, Steitz JA. 1996. A mammalian gene with introns instead of exons generating stable RNA products. Nature 379:464-466.
38. Tycowski KT, Smith CM, Shu MD, Steitz JA. 1996. A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus. Proc Natl Acad Sci USA 93:14480-14485.
39. Ware VC, Tague BW, Clark CG, Gourse RL, Brand RC, Gerbi SA. 1983. Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis. Nucleic Acids Res 11:7795-7817.
40. Watkins NJ, Leverette RD, Xia L, Andrew MT, Maxwell ES. 1996. Elements essential for processing intronic U14 snoRNA are located at the termini of the mature snoRNA sequence and include conserved nucleotide boxes C and D. RNA 2:118-133.
41. Watkins NJ, Newman DR, Kuhn JF, Maxwell ES. 1998. In vitro assembly of the mouse U14 snoRNP core complex and identification of a 65-kDa box C/D binding protein. RNA 4:582-593.
42. Wu P, Brockenbrough JS, Metcalfe AC, Chen S, Aris JP. 1998. Nop5p is a small nucleolar ribonucleoprotein component required for pre-18S rRNA processing in yeast. J Biol Chem 273:16453-16463.
43. Xia L, Watkins NJ, Maxwell ES. 1997. Identification of specific nucleotide sequences and structural elements required for intronic U14 snoRNA processing. RNA 3:17-26.