-
1
-
-
0022669622
-
The integrase family of site-specific recombinases: Regional similarities and global diversity
-
Argos, P., Landy, A., Abremski, K., Egan, J.B., Haggard-Ljungquist, E., Hoess, R.H., et al. (1986) The integrase family of site-specific recombinases: regional similarities and global diversity. Embo J 5: 433-440.
-
(1986)
Embo J
, vol.5
, pp. 433-440
-
-
Argos, P.1
Landy, A.2
Abremski, K.3
Egan, J.B.4
Haggard-Ljungquist, E.5
Hoess, R.H.6
-
2
-
-
0025766646
-
Efficient excision of phage lambda from the Escherichia coli chromosome requires the Fis protein
-
Ball, C.A., and Johnson, R.C. (1991a) Efficient excision of phage lambda from the Escherichia coli chromosome requires the Fis protein. J Bacteriol 173: 4027-4031.
-
(1991)
J Bacteriol
, vol.173
, pp. 4027-4031
-
-
Ball, C.A.1
Johnson, R.C.2
-
3
-
-
0025740394
-
Multiple effects of Fis on integration and the control of lysogeny in phage lambda
-
Ball, C.A., and Johnson, R.C. (1991b) Multiple effects of Fis on integration and the control of lysogeny in phage lambda. J Bacteriol 173: 4032-4038.
-
(1991)
J Bacteriol
, vol.173
, pp. 4032-4038
-
-
Ball, C.A.1
Johnson, R.C.2
-
4
-
-
0023029428
-
Mutational analysis of integrase arm-type binding sites of bacteriophage lambda. Integration and excision involve distinct interactions of integrase with arm-type sites
-
Bauer, C.E., Hesse, S.D., Gumport, R.I., and Gardner, J.F. (1986) Mutational analysis of integrase arm-type binding sites of bacteriophage lambda. Integration and excision involve distinct interactions of integrase with arm-type sites. J Mol Biol 192: 513-527.
-
(1986)
J Mol Biol
, vol.192
, pp. 513-527
-
-
Bauer, C.E.1
Hesse, S.D.2
Gumport, R.I.3
Gardner, J.F.4
-
5
-
-
0020397021
-
Site-specific DNA condensation and pairing mediated by the Int protein of bacteriophage lambda
-
Better, M., Lu, C., Williams, R.C., and Echols, H. (1982) Site-specific DNA condensation and pairing mediated by the Int protein of bacteriophage lambda. Proc Natl Acad Sci USA 79: 5837-5841.
-
(1982)
Proc Natl Acad Sci USA
, vol.79
, pp. 5837-5841
-
-
Better, M.1
Lu, C.2
Williams, R.C.3
Echols, H.4
-
6
-
-
0020651375
-
Role of the Xis protein of bacteriophage lambda in a specific reactive complex at the attR prophage attachment site
-
Better, M., Wickner, S., Auerbach, J., and Echols, H. (1983) Role of the Xis protein of bacteriophage lambda in a specific reactive complex at the attR prophage attachment site. Cell 32: 161-168.
-
(1983)
Cell
, vol.32
, pp. 161-168
-
-
Better, M.1
Wickner, S.2
Auerbach, J.3
Echols, H.4
-
7
-
-
0011124187
-
Site-specific recombination of bacteriophage P22 does not require integration host factor
-
Cho, E.H., Nam, C.E., Alcaraz, Jr, R. and Gardner, J.F. (1999) Site-specific recombination of bacteriophage P22 does not require integration host factor. J Bacteriol 181: 4245-4249.
-
(1999)
J Bacteriol
, vol.181
, pp. 4245-4249
-
-
Cho, E.H.1
Nam, C.E.2
Alcaraz R., Jr.3
Gardner, J.F.4
-
8
-
-
0021044687
-
The mechanism of phage lambda site-specific recombination: Site-specific breakage of DNA by Int topoisomerase
-
Craig, N.L., and Nash, H.A. (1983) The mechanism of phage lambda site-specific recombination: site-specific breakage of DNA by Int topoisomerase. Cell 35: 795-803.
-
(1983)
Cell
, vol.35
, pp. 795-803
-
-
Craig, N.L.1
Nash, H.A.2
-
9
-
-
0021710080
-
E. coli integration host factor binds to specific sites in DNA
-
Craig, N.L., and Nash, H.A. (1984) E. coli integration host factor binds to specific sites in DNA. Cell 39: 707-716.
-
(1984)
Cell
, vol.39
, pp. 707-716
-
-
Craig, N.L.1
Nash, H.A.2
-
10
-
-
0001040367
-
An algorithm for protein secondary structure prediction based on class prediction
-
Deleage, G., and Roux, B. (1987) An algorithm for protein secondary structure prediction based on class prediction. Protein Eng 1: 289-294.
-
(1987)
Protein Eng
, vol.1
, pp. 289-294
-
-
Deleage, G.1
Roux, B.2
-
11
-
-
0027461549
-
Xis and Fis proteins prevent site-specific DNA inversion in lysogens of phage HK022
-
Dorgai, L., Oberto, J., and Weisberg, R.A. (1993) Xis and Fis proteins prevent site-specific DNA inversion in lysogens of phage HK022. J Bacteriol 175: 693-700.
-
(1993)
J Bacteriol
, vol.175
, pp. 693-700
-
-
Dorgai, L.1
Oberto, J.2
Weisberg, R.A.3
-
12
-
-
0029147088
-
Identifying determinants of recombination specificity: Construction and characterization of mutant bacteriophage integrases
-
Dorgai, L., Yagil, E., and Weisberg, R.A. (1995) Identifying determinants of recombination specificity: construction and characterization of mutant bacteriophage integrases. J Mol Biol 252: 178-188.
-
(1995)
J Mol Biol
, vol.252
, pp. 178-188
-
-
Dorgai, L.1
Yagil, E.2
Weisberg, R.A.3
-
13
-
-
0032540301
-
Recognition of core binding sites by bacteriophage integrases
-
Dorgai, L., Sloan, S., and Weisberg, R.A. (1998) Recognition of core binding sites by bacteriophage integrases. J Mol Biol 277: 1059-1070.
-
(1998)
J Mol Biol
, vol.277
, pp. 1059-1070
-
-
Dorgai, L.1
Sloan, S.2
Weisberg, R.A.3
-
14
-
-
0029996162
-
Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence
-
Frishman, D., and Argos, P. (1996) Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence. Protein Eng 9: 133-142.
-
(1996)
Protein Eng
, vol.9
, pp. 133-142
-
-
Frishman, D.1
Argos, P.2
-
15
-
-
0029884694
-
GOR method for predicting protein secondary structure from amino acid sequence
-
Garnier, J., Gibrat, J.F., and Robson, B. (1996) GOR method for predicting protein secondary structure from amino acid sequence. Methods Enzymol 266: 540-553.
-
(1996)
Methods Enzymol
, vol.266
, pp. 540-553
-
-
Garnier, J.1
Gibrat, J.F.2
Robson, B.3
-
16
-
-
0028009149
-
SOPM: A self-optimized method for protein secondary structure prediction
-
Geourjon, C., and Deleage, G. (1994) SOPM: a self-optimized method for protein secondary structure prediction. Protein Eng 7: 157-164.
-
(1994)
Protein Eng
, vol.7
, pp. 157-164
-
-
Geourjon, C.1
Deleage, G.2
-
17
-
-
0028125987
-
Mapping the functional domains of bacteriophage lambda integrase protein
-
Han, Y.W., Gumport, R.I., and Gardner, J.F. (1994) Mapping the functional domains of bacteriophage lambda integrase protein. J Mol Biol 235: 908-925.
-
(1994)
J Mol Biol
, vol.235
, pp. 908-925
-
-
Han, Y.W.1
Gumport, R.I.2
Gardner, J.F.3
-
18
-
-
0025223119
-
Mapping of a higher order protein-DNA complex: Two kinds of long-range interactions in lambda attL
-
Kim, S., Moitoso de Vargas, L., Nunes-Duby, S.E., and Landy, A. (1990) Mapping of a higher order protein-DNA complex: two kinds of long-range interactions in lambda attL. Cell 63: 773-781.
-
(1990)
Cell
, vol.63
, pp. 773-781
-
-
Kim, S.1
Moitoso De Vargas, L.2
Nunes-Duby, S.E.3
Landy, A.4
-
19
-
-
0029804192
-
Identification and application of the concepts important for accurate and reliable protein secondary structure prediction
-
King, R.D., and Sternberg, M.J. (1996) Identification and application of the concepts important for accurate and reliable protein secondary structure prediction. Protein Sci 5: 2298-2310.
-
(1996)
Protein Sci
, vol.5
, pp. 2298-2310
-
-
King, R.D.1
Sternberg, M.J.2
-
20
-
-
0027946737
-
Position and direction of strand exchange in bacteriophage HK022 integration
-
Kolot, M., and Yagil, E. (1994) Position and direction of strand exchange in bacteriophage HK022 integration. Mol Gen Genet 245: 623-627.
-
(1994)
Mol Gen Genet
, vol.245
, pp. 623-627
-
-
Kolot, M.1
Yagil, E.2
-
21
-
-
0001656001
-
Flexibility in DNA recombination: Structure of the lambda integrase catalytic core
-
Kwon, H.J., Tirumalai, R., Landy, A., and Ellenberger, T. (1997) Flexibility in DNA recombination: structure of the lambda integrase catalytic core. Science 276: 126-131.
-
(1997)
Science
, vol.276
, pp. 126-131
-
-
Kwon, H.J.1
Tirumalai, R.2
Landy, A.3
Ellenberger, T.4
-
22
-
-
0024386798
-
Dynamic, structural, and regulatory aspects of lambda site-specific recombination
-
Landy, A. (1989) Dynamic, structural, and regulatory aspects of lambda site-specific recombination. Annu Rev Biochem 58: 913-949.
-
(1989)
Annu Rev Biochem
, vol.58
, pp. 913-949
-
-
Landy, A.1
-
23
-
-
0025213120
-
Genetic analysis of bacteriophage lambda integrase interactions with arm-type attachment site sequences
-
Lee, E.C., Gumport, R.I., and Gardner, J.F. (1990) Genetic analysis of bacteriophage lambda integrase interactions with arm-type attachment site sequences. J Bacteriol 172: 1529-1538.
-
(1990)
J Bacteriol
, vol.172
, pp. 1529-1538
-
-
Lee, E.C.1
Gumport, R.I.2
Gardner, J.F.3
-
24
-
-
0026541608
-
The isolation and characterization of mutants of the integration host factor (IHF) of Escherichia coli with altered, expanded DNA-binding specificities
-
Lee, E.C., Hales, L.M., Gumport, R.I., and Gardner, J.F. (1992) The isolation and characterization of mutants of the integration host factor (IHF) of Escherichia coli with altered, expanded DNA-binding specificities. Embo J 11: 305-313.
-
(1992)
Embo J
, vol.11
, pp. 305-313
-
-
Lee, E.C.1
Hales, L.M.2
Gumport, R.I.3
Gardner, J.F.4
-
25
-
-
0023050277
-
An algorithm for secondary structure determination in proteins based on sequence similarity
-
Levin, J.M., Robson, B., and Garnier, J. (1986) An algorithm for secondary structure determination in proteins based on sequence similarity. FEBS Microbiol Lett 205: 303-308.
-
(1986)
FEBS Microbiol Lett
, vol.205
, pp. 303-308
-
-
Levin, J.M.1
Robson, B.2
Garnier, J.3
-
26
-
-
0029971048
-
Genetic analysis of the bacteriophage lambda attl nucleoprotein complex
-
MacWilliams, M.P., Gumport, R.I., and Gardner, J.F. (1996) Genetic analysis of the bacteriophage lambda attL nucleoprotein complex. Genetics 143: 1069-1079.
-
(1996)
Genetics
, vol.143
, pp. 1069-1079
-
-
MacWilliams, M.P.1
Gumport, R.I.2
Gardner, J.F.3
-
27
-
-
0031056717
-
Mutational analysis of protein binding sites involved in formation of the bacteriophage lambda attL complex
-
MacWilliams, M.P., Gumport, R.I., and Gardner, J.F. (1997) Mutational analysis of protein binding sites involved in formation of the bacteriophage lambda attL complex. J Bacteriol 179: 1059-1067.
-
(1997)
J Bacteriol
, vol.179
, pp. 1059-1067
-
-
MacWilliams, M.P.1
Gumport, R.I.2
Gardner, J.F.3
-
29
-
-
17144472211
-
Structure and function of the phage lambda att site: Size, Int-binding sites, and location of the crossover point
-
Mizuuchi, K., Weisberg, R., Enquist, L., Mizuuchi, M., Buraczynska, M., Foeller, C., et al. (1981) Structure and function of the phage lambda att site: size, Int-binding Sites, and location of the crossover point. Cold Spring Harb Symp Quant Biol 1: 429-437.
-
(1981)
Cold Spring Harb Symp Quant Biol
, vol.1
, pp. 429-437
-
-
Mizuuchi, K.1
Weisberg, R.2
Enquist, L.3
Mizuuchi, M.4
Buraczynska, M.5
Foeller, C.6
-
30
-
-
0024295418
-
Autonomous DNA binding domains of lambda integrase recognize two different sequence families
-
Moitoso de Vargas, L., Pargellis, C.A., Hasan, N.M., Bushman, E.W., and Landy, A. (1988) Autonomous DNA binding domains of lambda integrase recognize two different sequence families. Cell 54: 923-929.
-
(1988)
Cell
, vol.54
, pp. 923-929
-
-
Moitoso De Vargas, L.1
Pargellis, C.A.2
Hasan, N.M.3
Bushman, E.W.4
Landy, A.5
-
31
-
-
0025147545
-
Specificity determinants in the attachment sites of bacteriophages HK022 and lambda
-
Nagaraja, R., and Weisberg, R.A. (1990) Specificity determinants in the attachment sites of bacteriophages HK022 and lambda. J Bacteriol 172: 6540-6550.
-
(1990)
J Bacteriol
, vol.172
, pp. 6540-6550
-
-
Nagaraja, R.1
Weisberg, R.A.2
-
32
-
-
0000078911
-
Site-specific recombination: Integration, excision, resolution, and inversion of defined DNA segments
-
Neidhardt, F.C., Curtiss, III, R. Ingraham, J.L., Lin, E.C.C., Low, K.B., Magasanik, B., et al. (eds). Washington: American Society for Microbiology Press
-
Nash, H.A. (1996) Site-specific recombination: integration, excision, resolution, and inversion of defined DNA segments. In Escherichia Coli and Salmonella: Cellular and Molecular Biology. Neidhardt, F.C., Curtiss, III, R. Ingraham, J.L., Lin, E.C.C., Low, K.B., Magasanik, B., et al. (eds). Washington: American Society for Microbiology Press, pp. 2363-2376.
-
(1996)
Escherichia Coli and Salmonella: Cellular and Molecular Biology
, pp. 2363-2376
-
-
Nash, H.A.1
-
33
-
-
0026050314
-
A genetic analysis of Xis and FIS interactions with their binding sites in bacteriophage lambda
-
Numrych, T.E., Gumport, R.I., and Gardner, J.F. (1991) A genetic analysis of Xis and FIS interactions with their binding sites in bacteriophage lambda. J Bacteriol 173: 5954-5963.
-
(1991)
J Bacteriol
, vol.173
, pp. 5954-5963
-
-
Numrych, T.E.1
Gumport, R.I.2
Gardner, J.F.3
-
34
-
-
0038659759
-
Similarities and differences among 105 members of the int family of site-specific recombinases
-
Nunes-Düby, S.E., Kwon, H.J., Tirumalai, R.S., Ellenberger, T., and Landy, A. (1998) Similarities and differences among 105 members of the Int family of site-specific recombinases. Nucleic Acids Res 26: 391-406.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 391-406
-
-
Nunes-Düby, S.E.1
Kwon, H.J.2
Tirumalai, R.S.3
Ellenberger, T.4
Landy, A.5
-
35
-
-
0024278670
-
Suicide recombination substrates yield covalent lambda integrase-DNA complexes and lead to identification of the active site tyrosine
-
Pargellis, C.A., Nunes-Duby, S.E., de Vargas, L.M., and Landy, A. (1988) Suicide recombination substrates yield covalent lambda integrase-DNA complexes and lead to identification of the active site tyrosine. J Biol Chem 263: 7678-7685.
-
(1988)
J Biol Chem
, vol.263
, pp. 7678-7685
-
-
Pargellis, C.A.1
Nunes-Duby, S.E.2
De Vargas, L.M.3
Landy, A.4
-
36
-
-
0023854278
-
Synapsis of attachment sites during lambda integrative recombination involves capture of a naked DNA by a protein-DNA complex
-
Richet, E., Abcarian, P., and Nash, H.A. (1988) Synapsis of attachment sites during lambda integrative recombination involves capture of a naked DNA by a protein-DNA complex. Cell 52: 9-17.
-
(1988)
Cell
, vol.52
, pp. 9-17
-
-
Richet, E.1
Abcarian, P.2
Nash, H.A.3
-
37
-
-
0020361203
-
Bacteriophage lambda int protein recognizes two classes of sequence in the phage att site: Characterization of arm-type sites
-
Ross, W., and Landy, A. (1982) Bacteriophage lambda Int protein recognizes two classes of sequence in the phage att site: characterization of arm-type sites. Proc Natl Acad Sci USA 79: 7724-7728.
-
(1982)
Proc Natl Acad Sci USA
, vol.79
, pp. 7724-7728
-
-
Ross, W.1
Landy, A.2
-
38
-
-
0020537076
-
Patterns of lambda int recognition in the regions of strand exchange
-
Ross, W., and Landy, A. (1983) Patterns of lambda Int recognition in the regions of strand exchange. Cell 33: 261-272.
-
(1983)
Cell
, vol.33
, pp. 261-272
-
-
Ross, W.1
Landy, A.2
-
39
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
Rost, B., and Sander, C. (1993) Prediction of protein secondary structure at better than 70% accuracy. J Mol Biol 232: 584-599.
-
(1993)
J Mol Biol
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
40
-
-
0004136246
-
-
Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
-
Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
41
-
-
0023651267
-
Cellular factors couple recombination with growth phase: Characterization of a new component in the lambda site-specific recombination pathway
-
Thompson, J.F., Moitoso de Vargas, L., Koch, C., Kahmann, R., and Landy, A. (1987) Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway. Cell 50: 901-908.
-
(1987)
Cell
, vol.50
, pp. 901-908
-
-
Thompson, J.F.1
Moitoso De Vargas, L.2
Koch, C.3
Kahmann, R.4
Landy, A.5
-
42
-
-
0032511135
-
Recognition of core-type DNA sites by lambda integrase
-
Tirumalai, R.S., Kwon, H.J., Cardente, E.H., Ellenberger, T., and Landy, A. (1998) Recognition of core-type DNA sites by lambda integrase. J Mol Biol 279: 513-527.
-
(1998)
J Mol Biol
, vol.279
, pp. 513-527
-
-
Tirumalai, R.S.1
Kwon, H.J.2
Cardente, E.H.3
Ellenberger, T.4
Landy, A.5
-
43
-
-
0033367471
-
Family values in the age of genomics: Comparative analyses of temperate bacteriophage HK022
-
Weisberg, R.A., Gottesman, M., Hendrix, R., and Little, J. (1999) Family Values in the Age of Genomics: Comparative Analyses of Temperate Bacteriophage HK022. Annu Rev Genet 33: 565-602.
-
(1999)
Annu Rev Genet
, vol.33
, pp. 565-602
-
-
Weisberg, R.A.1
Gottesman, M.2
Hendrix, R.3
Little, J.4
-
44
-
-
0024332396
-
Determinants of site-specific recombination in the lambdoid coliphage HK022. An evolutionary change in specificity
-
Yagil, E., Dolev, S., Oberto, J., Kislev, N., Ramaiah, N., and Weisberg, R.A. (1989) Determinants of site-specific recombination in the lambdoid coliphage HK022. An evolutionary change in specificity. J Mol Biol 207: 695-717.
-
(1989)
J Mol Biol
, vol.207
, pp. 695-717
-
-
Yagil, E.1
Dolev, S.2
Oberto, J.3
Kislev, N.4
Ramaiah, N.5
Weisberg, R.A.6
-
45
-
-
0029082073
-
Identifying determinants of recombination specificity: Construction and characterization of chimeric bacteriophage integrases
-
Yagil, E., Dorgai, L., and Weisberg, R.A. (1995) Identifying determinants of recombination specificity: construction and characterization of chimeric bacteriophage integrases. J Mol Biol 252: 163-177.
-
(1995)
J Mol Biol
, vol.252
, pp. 163-177
-
-
Yagil, E.1
Dorgai, L.2
Weisberg, R.A.3
-
46
-
-
0021942310
-
Interaction of the lambda site-specific recombination protein Xis with attachment site DNA
-
Yin, S., Bushman, W., and Landy, A. (1985) Interaction of the lambda site-specific recombination protein Xis with attachment site DNA. Proc Natl Acad Sci USA 82: 1040-1044.
-
(1985)
Proc Natl Acad Sci USA
, vol.82
, pp. 1040-1044
-
-
Yin, S.1
Bushman, W.2
Landy, A.3
|