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Volumn 36, Issue 2, 2000, Pages 424-436

Specificity determinants for bacteriophage Hong Kong 022 integrase: Analysis of mutants with relaxed core-binding specificities

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EID: 0034016088     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.2000.01860.x     Document Type: Article
Times cited : (27)

References (46)
  • 1
    • 0022669622 scopus 로고
    • The integrase family of site-specific recombinases: Regional similarities and global diversity
    • Argos, P., Landy, A., Abremski, K., Egan, J.B., Haggard-Ljungquist, E., Hoess, R.H., et al. (1986) The integrase family of site-specific recombinases: regional similarities and global diversity. Embo J 5: 433-440.
    • (1986) Embo J , vol.5 , pp. 433-440
    • Argos, P.1    Landy, A.2    Abremski, K.3    Egan, J.B.4    Haggard-Ljungquist, E.5    Hoess, R.H.6
  • 2
    • 0025766646 scopus 로고
    • Efficient excision of phage lambda from the Escherichia coli chromosome requires the Fis protein
    • Ball, C.A., and Johnson, R.C. (1991a) Efficient excision of phage lambda from the Escherichia coli chromosome requires the Fis protein. J Bacteriol 173: 4027-4031.
    • (1991) J Bacteriol , vol.173 , pp. 4027-4031
    • Ball, C.A.1    Johnson, R.C.2
  • 3
    • 0025740394 scopus 로고
    • Multiple effects of Fis on integration and the control of lysogeny in phage lambda
    • Ball, C.A., and Johnson, R.C. (1991b) Multiple effects of Fis on integration and the control of lysogeny in phage lambda. J Bacteriol 173: 4032-4038.
    • (1991) J Bacteriol , vol.173 , pp. 4032-4038
    • Ball, C.A.1    Johnson, R.C.2
  • 4
    • 0023029428 scopus 로고
    • Mutational analysis of integrase arm-type binding sites of bacteriophage lambda. Integration and excision involve distinct interactions of integrase with arm-type sites
    • Bauer, C.E., Hesse, S.D., Gumport, R.I., and Gardner, J.F. (1986) Mutational analysis of integrase arm-type binding sites of bacteriophage lambda. Integration and excision involve distinct interactions of integrase with arm-type sites. J Mol Biol 192: 513-527.
    • (1986) J Mol Biol , vol.192 , pp. 513-527
    • Bauer, C.E.1    Hesse, S.D.2    Gumport, R.I.3    Gardner, J.F.4
  • 5
    • 0020397021 scopus 로고
    • Site-specific DNA condensation and pairing mediated by the Int protein of bacteriophage lambda
    • Better, M., Lu, C., Williams, R.C., and Echols, H. (1982) Site-specific DNA condensation and pairing mediated by the Int protein of bacteriophage lambda. Proc Natl Acad Sci USA 79: 5837-5841.
    • (1982) Proc Natl Acad Sci USA , vol.79 , pp. 5837-5841
    • Better, M.1    Lu, C.2    Williams, R.C.3    Echols, H.4
  • 6
    • 0020651375 scopus 로고
    • Role of the Xis protein of bacteriophage lambda in a specific reactive complex at the attR prophage attachment site
    • Better, M., Wickner, S., Auerbach, J., and Echols, H. (1983) Role of the Xis protein of bacteriophage lambda in a specific reactive complex at the attR prophage attachment site. Cell 32: 161-168.
    • (1983) Cell , vol.32 , pp. 161-168
    • Better, M.1    Wickner, S.2    Auerbach, J.3    Echols, H.4
  • 7
    • 0011124187 scopus 로고    scopus 로고
    • Site-specific recombination of bacteriophage P22 does not require integration host factor
    • Cho, E.H., Nam, C.E., Alcaraz, Jr, R. and Gardner, J.F. (1999) Site-specific recombination of bacteriophage P22 does not require integration host factor. J Bacteriol 181: 4245-4249.
    • (1999) J Bacteriol , vol.181 , pp. 4245-4249
    • Cho, E.H.1    Nam, C.E.2    Alcaraz R., Jr.3    Gardner, J.F.4
  • 8
    • 0021044687 scopus 로고
    • The mechanism of phage lambda site-specific recombination: Site-specific breakage of DNA by Int topoisomerase
    • Craig, N.L., and Nash, H.A. (1983) The mechanism of phage lambda site-specific recombination: site-specific breakage of DNA by Int topoisomerase. Cell 35: 795-803.
    • (1983) Cell , vol.35 , pp. 795-803
    • Craig, N.L.1    Nash, H.A.2
  • 9
    • 0021710080 scopus 로고
    • E. coli integration host factor binds to specific sites in DNA
    • Craig, N.L., and Nash, H.A. (1984) E. coli integration host factor binds to specific sites in DNA. Cell 39: 707-716.
    • (1984) Cell , vol.39 , pp. 707-716
    • Craig, N.L.1    Nash, H.A.2
  • 10
    • 0001040367 scopus 로고
    • An algorithm for protein secondary structure prediction based on class prediction
    • Deleage, G., and Roux, B. (1987) An algorithm for protein secondary structure prediction based on class prediction. Protein Eng 1: 289-294.
    • (1987) Protein Eng , vol.1 , pp. 289-294
    • Deleage, G.1    Roux, B.2
  • 11
    • 0027461549 scopus 로고
    • Xis and Fis proteins prevent site-specific DNA inversion in lysogens of phage HK022
    • Dorgai, L., Oberto, J., and Weisberg, R.A. (1993) Xis and Fis proteins prevent site-specific DNA inversion in lysogens of phage HK022. J Bacteriol 175: 693-700.
    • (1993) J Bacteriol , vol.175 , pp. 693-700
    • Dorgai, L.1    Oberto, J.2    Weisberg, R.A.3
  • 12
    • 0029147088 scopus 로고
    • Identifying determinants of recombination specificity: Construction and characterization of mutant bacteriophage integrases
    • Dorgai, L., Yagil, E., and Weisberg, R.A. (1995) Identifying determinants of recombination specificity: construction and characterization of mutant bacteriophage integrases. J Mol Biol 252: 178-188.
    • (1995) J Mol Biol , vol.252 , pp. 178-188
    • Dorgai, L.1    Yagil, E.2    Weisberg, R.A.3
  • 13
    • 0032540301 scopus 로고    scopus 로고
    • Recognition of core binding sites by bacteriophage integrases
    • Dorgai, L., Sloan, S., and Weisberg, R.A. (1998) Recognition of core binding sites by bacteriophage integrases. J Mol Biol 277: 1059-1070.
    • (1998) J Mol Biol , vol.277 , pp. 1059-1070
    • Dorgai, L.1    Sloan, S.2    Weisberg, R.A.3
  • 14
    • 0029996162 scopus 로고    scopus 로고
    • Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence
    • Frishman, D., and Argos, P. (1996) Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence. Protein Eng 9: 133-142.
    • (1996) Protein Eng , vol.9 , pp. 133-142
    • Frishman, D.1    Argos, P.2
  • 15
    • 0029884694 scopus 로고    scopus 로고
    • GOR method for predicting protein secondary structure from amino acid sequence
    • Garnier, J., Gibrat, J.F., and Robson, B. (1996) GOR method for predicting protein secondary structure from amino acid sequence. Methods Enzymol 266: 540-553.
    • (1996) Methods Enzymol , vol.266 , pp. 540-553
    • Garnier, J.1    Gibrat, J.F.2    Robson, B.3
  • 16
    • 0028009149 scopus 로고
    • SOPM: A self-optimized method for protein secondary structure prediction
    • Geourjon, C., and Deleage, G. (1994) SOPM: a self-optimized method for protein secondary structure prediction. Protein Eng 7: 157-164.
    • (1994) Protein Eng , vol.7 , pp. 157-164
    • Geourjon, C.1    Deleage, G.2
  • 17
    • 0028125987 scopus 로고
    • Mapping the functional domains of bacteriophage lambda integrase protein
    • Han, Y.W., Gumport, R.I., and Gardner, J.F. (1994) Mapping the functional domains of bacteriophage lambda integrase protein. J Mol Biol 235: 908-925.
    • (1994) J Mol Biol , vol.235 , pp. 908-925
    • Han, Y.W.1    Gumport, R.I.2    Gardner, J.F.3
  • 18
    • 0025223119 scopus 로고
    • Mapping of a higher order protein-DNA complex: Two kinds of long-range interactions in lambda attL
    • Kim, S., Moitoso de Vargas, L., Nunes-Duby, S.E., and Landy, A. (1990) Mapping of a higher order protein-DNA complex: two kinds of long-range interactions in lambda attL. Cell 63: 773-781.
    • (1990) Cell , vol.63 , pp. 773-781
    • Kim, S.1    Moitoso De Vargas, L.2    Nunes-Duby, S.E.3    Landy, A.4
  • 19
    • 0029804192 scopus 로고    scopus 로고
    • Identification and application of the concepts important for accurate and reliable protein secondary structure prediction
    • King, R.D., and Sternberg, M.J. (1996) Identification and application of the concepts important for accurate and reliable protein secondary structure prediction. Protein Sci 5: 2298-2310.
    • (1996) Protein Sci , vol.5 , pp. 2298-2310
    • King, R.D.1    Sternberg, M.J.2
  • 20
    • 0027946737 scopus 로고
    • Position and direction of strand exchange in bacteriophage HK022 integration
    • Kolot, M., and Yagil, E. (1994) Position and direction of strand exchange in bacteriophage HK022 integration. Mol Gen Genet 245: 623-627.
    • (1994) Mol Gen Genet , vol.245 , pp. 623-627
    • Kolot, M.1    Yagil, E.2
  • 21
    • 0001656001 scopus 로고    scopus 로고
    • Flexibility in DNA recombination: Structure of the lambda integrase catalytic core
    • Kwon, H.J., Tirumalai, R., Landy, A., and Ellenberger, T. (1997) Flexibility in DNA recombination: structure of the lambda integrase catalytic core. Science 276: 126-131.
    • (1997) Science , vol.276 , pp. 126-131
    • Kwon, H.J.1    Tirumalai, R.2    Landy, A.3    Ellenberger, T.4
  • 22
    • 0024386798 scopus 로고
    • Dynamic, structural, and regulatory aspects of lambda site-specific recombination
    • Landy, A. (1989) Dynamic, structural, and regulatory aspects of lambda site-specific recombination. Annu Rev Biochem 58: 913-949.
    • (1989) Annu Rev Biochem , vol.58 , pp. 913-949
    • Landy, A.1
  • 23
    • 0025213120 scopus 로고
    • Genetic analysis of bacteriophage lambda integrase interactions with arm-type attachment site sequences
    • Lee, E.C., Gumport, R.I., and Gardner, J.F. (1990) Genetic analysis of bacteriophage lambda integrase interactions with arm-type attachment site sequences. J Bacteriol 172: 1529-1538.
    • (1990) J Bacteriol , vol.172 , pp. 1529-1538
    • Lee, E.C.1    Gumport, R.I.2    Gardner, J.F.3
  • 24
    • 0026541608 scopus 로고
    • The isolation and characterization of mutants of the integration host factor (IHF) of Escherichia coli with altered, expanded DNA-binding specificities
    • Lee, E.C., Hales, L.M., Gumport, R.I., and Gardner, J.F. (1992) The isolation and characterization of mutants of the integration host factor (IHF) of Escherichia coli with altered, expanded DNA-binding specificities. Embo J 11: 305-313.
    • (1992) Embo J , vol.11 , pp. 305-313
    • Lee, E.C.1    Hales, L.M.2    Gumport, R.I.3    Gardner, J.F.4
  • 25
    • 0023050277 scopus 로고
    • An algorithm for secondary structure determination in proteins based on sequence similarity
    • Levin, J.M., Robson, B., and Garnier, J. (1986) An algorithm for secondary structure determination in proteins based on sequence similarity. FEBS Microbiol Lett 205: 303-308.
    • (1986) FEBS Microbiol Lett , vol.205 , pp. 303-308
    • Levin, J.M.1    Robson, B.2    Garnier, J.3
  • 26
    • 0029971048 scopus 로고    scopus 로고
    • Genetic analysis of the bacteriophage lambda attl nucleoprotein complex
    • MacWilliams, M.P., Gumport, R.I., and Gardner, J.F. (1996) Genetic analysis of the bacteriophage lambda attL nucleoprotein complex. Genetics 143: 1069-1079.
    • (1996) Genetics , vol.143 , pp. 1069-1079
    • MacWilliams, M.P.1    Gumport, R.I.2    Gardner, J.F.3
  • 27
    • 0031056717 scopus 로고    scopus 로고
    • Mutational analysis of protein binding sites involved in formation of the bacteriophage lambda attL complex
    • MacWilliams, M.P., Gumport, R.I., and Gardner, J.F. (1997) Mutational analysis of protein binding sites involved in formation of the bacteriophage lambda attL complex. J Bacteriol 179: 1059-1067.
    • (1997) J Bacteriol , vol.179 , pp. 1059-1067
    • MacWilliams, M.P.1    Gumport, R.I.2    Gardner, J.F.3
  • 29
  • 30
    • 0024295418 scopus 로고
    • Autonomous DNA binding domains of lambda integrase recognize two different sequence families
    • Moitoso de Vargas, L., Pargellis, C.A., Hasan, N.M., Bushman, E.W., and Landy, A. (1988) Autonomous DNA binding domains of lambda integrase recognize two different sequence families. Cell 54: 923-929.
    • (1988) Cell , vol.54 , pp. 923-929
    • Moitoso De Vargas, L.1    Pargellis, C.A.2    Hasan, N.M.3    Bushman, E.W.4    Landy, A.5
  • 31
    • 0025147545 scopus 로고
    • Specificity determinants in the attachment sites of bacteriophages HK022 and lambda
    • Nagaraja, R., and Weisberg, R.A. (1990) Specificity determinants in the attachment sites of bacteriophages HK022 and lambda. J Bacteriol 172: 6540-6550.
    • (1990) J Bacteriol , vol.172 , pp. 6540-6550
    • Nagaraja, R.1    Weisberg, R.A.2
  • 32
    • 0000078911 scopus 로고    scopus 로고
    • Site-specific recombination: Integration, excision, resolution, and inversion of defined DNA segments
    • Neidhardt, F.C., Curtiss, III, R. Ingraham, J.L., Lin, E.C.C., Low, K.B., Magasanik, B., et al. (eds). Washington: American Society for Microbiology Press
    • Nash, H.A. (1996) Site-specific recombination: integration, excision, resolution, and inversion of defined DNA segments. In Escherichia Coli and Salmonella: Cellular and Molecular Biology. Neidhardt, F.C., Curtiss, III, R. Ingraham, J.L., Lin, E.C.C., Low, K.B., Magasanik, B., et al. (eds). Washington: American Society for Microbiology Press, pp. 2363-2376.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology , pp. 2363-2376
    • Nash, H.A.1
  • 33
    • 0026050314 scopus 로고
    • A genetic analysis of Xis and FIS interactions with their binding sites in bacteriophage lambda
    • Numrych, T.E., Gumport, R.I., and Gardner, J.F. (1991) A genetic analysis of Xis and FIS interactions with their binding sites in bacteriophage lambda. J Bacteriol 173: 5954-5963.
    • (1991) J Bacteriol , vol.173 , pp. 5954-5963
    • Numrych, T.E.1    Gumport, R.I.2    Gardner, J.F.3
  • 34
    • 0038659759 scopus 로고    scopus 로고
    • Similarities and differences among 105 members of the int family of site-specific recombinases
    • Nunes-Düby, S.E., Kwon, H.J., Tirumalai, R.S., Ellenberger, T., and Landy, A. (1998) Similarities and differences among 105 members of the Int family of site-specific recombinases. Nucleic Acids Res 26: 391-406.
    • (1998) Nucleic Acids Res , vol.26 , pp. 391-406
    • Nunes-Düby, S.E.1    Kwon, H.J.2    Tirumalai, R.S.3    Ellenberger, T.4    Landy, A.5
  • 35
    • 0024278670 scopus 로고
    • Suicide recombination substrates yield covalent lambda integrase-DNA complexes and lead to identification of the active site tyrosine
    • Pargellis, C.A., Nunes-Duby, S.E., de Vargas, L.M., and Landy, A. (1988) Suicide recombination substrates yield covalent lambda integrase-DNA complexes and lead to identification of the active site tyrosine. J Biol Chem 263: 7678-7685.
    • (1988) J Biol Chem , vol.263 , pp. 7678-7685
    • Pargellis, C.A.1    Nunes-Duby, S.E.2    De Vargas, L.M.3    Landy, A.4
  • 36
    • 0023854278 scopus 로고
    • Synapsis of attachment sites during lambda integrative recombination involves capture of a naked DNA by a protein-DNA complex
    • Richet, E., Abcarian, P., and Nash, H.A. (1988) Synapsis of attachment sites during lambda integrative recombination involves capture of a naked DNA by a protein-DNA complex. Cell 52: 9-17.
    • (1988) Cell , vol.52 , pp. 9-17
    • Richet, E.1    Abcarian, P.2    Nash, H.A.3
  • 37
    • 0020361203 scopus 로고
    • Bacteriophage lambda int protein recognizes two classes of sequence in the phage att site: Characterization of arm-type sites
    • Ross, W., and Landy, A. (1982) Bacteriophage lambda Int protein recognizes two classes of sequence in the phage att site: characterization of arm-type sites. Proc Natl Acad Sci USA 79: 7724-7728.
    • (1982) Proc Natl Acad Sci USA , vol.79 , pp. 7724-7728
    • Ross, W.1    Landy, A.2
  • 38
    • 0020537076 scopus 로고
    • Patterns of lambda int recognition in the regions of strand exchange
    • Ross, W., and Landy, A. (1983) Patterns of lambda Int recognition in the regions of strand exchange. Cell 33: 261-272.
    • (1983) Cell , vol.33 , pp. 261-272
    • Ross, W.1    Landy, A.2
  • 39
    • 0027291015 scopus 로고
    • Prediction of protein secondary structure at better than 70% accuracy
    • Rost, B., and Sander, C. (1993) Prediction of protein secondary structure at better than 70% accuracy. J Mol Biol 232: 584-599.
    • (1993) J Mol Biol , vol.232 , pp. 584-599
    • Rost, B.1    Sander, C.2
  • 41
    • 0023651267 scopus 로고
    • Cellular factors couple recombination with growth phase: Characterization of a new component in the lambda site-specific recombination pathway
    • Thompson, J.F., Moitoso de Vargas, L., Koch, C., Kahmann, R., and Landy, A. (1987) Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway. Cell 50: 901-908.
    • (1987) Cell , vol.50 , pp. 901-908
    • Thompson, J.F.1    Moitoso De Vargas, L.2    Koch, C.3    Kahmann, R.4    Landy, A.5
  • 43
    • 0033367471 scopus 로고    scopus 로고
    • Family values in the age of genomics: Comparative analyses of temperate bacteriophage HK022
    • Weisberg, R.A., Gottesman, M., Hendrix, R., and Little, J. (1999) Family Values in the Age of Genomics: Comparative Analyses of Temperate Bacteriophage HK022. Annu Rev Genet 33: 565-602.
    • (1999) Annu Rev Genet , vol.33 , pp. 565-602
    • Weisberg, R.A.1    Gottesman, M.2    Hendrix, R.3    Little, J.4
  • 44
    • 0024332396 scopus 로고
    • Determinants of site-specific recombination in the lambdoid coliphage HK022. An evolutionary change in specificity
    • Yagil, E., Dolev, S., Oberto, J., Kislev, N., Ramaiah, N., and Weisberg, R.A. (1989) Determinants of site-specific recombination in the lambdoid coliphage HK022. An evolutionary change in specificity. J Mol Biol 207: 695-717.
    • (1989) J Mol Biol , vol.207 , pp. 695-717
    • Yagil, E.1    Dolev, S.2    Oberto, J.3    Kislev, N.4    Ramaiah, N.5    Weisberg, R.A.6
  • 45
    • 0029082073 scopus 로고
    • Identifying determinants of recombination specificity: Construction and characterization of chimeric bacteriophage integrases
    • Yagil, E., Dorgai, L., and Weisberg, R.A. (1995) Identifying determinants of recombination specificity: construction and characterization of chimeric bacteriophage integrases. J Mol Biol 252: 163-177.
    • (1995) J Mol Biol , vol.252 , pp. 163-177
    • Yagil, E.1    Dorgai, L.2    Weisberg, R.A.3
  • 46
    • 0021942310 scopus 로고
    • Interaction of the lambda site-specific recombination protein Xis with attachment site DNA
    • Yin, S., Bushman, W., and Landy, A. (1985) Interaction of the lambda site-specific recombination protein Xis with attachment site DNA. Proc Natl Acad Sci USA 82: 1040-1044.
    • (1985) Proc Natl Acad Sci USA , vol.82 , pp. 1040-1044
    • Yin, S.1    Bushman, W.2    Landy, A.3


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