메뉴 건너뛰기




Volumn 277, Issue 5, 1998, Pages 1059-1070

Recognition of core binding sites by bacteriophage integrases

Author keywords

DNA protein interaction; Evolution; Lysogeny; Site specific recombination; Specificity determinants

Indexed keywords

DNA; INTEGRASE; NUCLEOTIDE;

EID: 0032540301     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.1642     Document Type: Article
Times cited : (28)

References (36)
  • 1
    • 0022429093 scopus 로고
    • Extent of sequence homology required for bacteriophage lambda site-specific recombination
    • Bauer C.E., Gardner J.F., Gumport R.I. Extent of sequence homology required for bacteriophage lambda site-specific recombination. J. Mol. Biol. 181:1985;187-197
    • (1985) J. Mol. Biol. , vol.181 , pp. 187-197
    • Bauer, C.E.1    Gardner, J.F.2    Gumport, R.I.3
  • 2
    • 0027015958 scopus 로고
    • Lambdoid phages as elements of bacterial genomes
    • Campbell A., Schneider S.J., Song B. Lambdoid phages as elements of bacterial genomes. Genetica. 86:1992;259-267
    • (1992) Genetica , vol.86 , pp. 259-267
    • Campbell, A.1    Schneider, S.J.2    Song, B.3
  • 3
    • 0021646261 scopus 로고
    • Enzymes and sites of genetic recombination: Studies with gene-3 endonuclease of phage T7 and with site-affinity mutants of phage lambda
    • de Massy B., Studier F.W., Dorgai L., Appelbaum E., Weisberg R.A. Enzymes and sites of genetic recombination studies with gene-3 endonuclease of phage T7 and with site-affinity mutants of phage lambda. Cold Spring Harbor Symp. Quant. Biol. 49:1984;715-726
    • (1984) Cold Spring Harbor Symp. Quant. Biol. , vol.49 , pp. 715-726
    • De Massy, B.1    Studier, F.W.2    Dorgai, L.3    Appelbaum, E.4    Weisberg, R.A.5
  • 4
    • 0027461549 scopus 로고
    • Xis and Fis proteins prevent site-specific DNA inversion in lysogens of phage HK022
    • Dorgai L., Oberto J., Weisberg R.A. Xis and Fis proteins prevent site-specific DNA inversion in lysogens of phage HK022. J. Bacteriol. 175:1993;693-700
    • (1993) J. Bacteriol. , vol.175 , pp. 693-700
    • Dorgai, L.1    Oberto, J.2    Weisberg, R.A.3
  • 5
    • 0029147088 scopus 로고
    • Identifying determinants of recombination specificity: Construction and characterization of mutant bacteriophage integrases
    • Dorgai L., Yagil E., Weisberg R.A. Identifying determinants of recombination specificity Construction and characterization of mutant bacteriophage integrases. J. Mol. Biol. 252:1995;178-188
    • (1995) J. Mol. Biol. , vol.252 , pp. 178-188
    • Dorgai, L.1    Yagil, E.2    Weisberg, R.A.3
  • 6
    • 0030886293 scopus 로고    scopus 로고
    • Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse
    • Guo F., Gopaul D.N., Van Duyne G.D. Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse. Nature. 389:1997;40-46
    • (1997) Nature , vol.389 , pp. 40-46
    • Guo, F.1    Gopaul, D.N.2    Van Duyne, G.D.3
  • 7
    • 0030904786 scopus 로고    scopus 로고
    • Molecular organization in site-specific recombination: The catalytic domain of bacteriophage HP1 integrase at 2. 7 a resolution
    • Hickman A.B., Waninger S., Scocca J.J., Dyda F. Molecular organization in site-specific recombination the catalytic domain of bacteriophage HP1 integrase at 2. 7 A resolution. Cell. 89:1997;227-237
    • (1997) Cell , vol.89 , pp. 227-237
    • Hickman, A.B.1    Waninger, S.2    Scocca, J.J.3    Dyda, F.4
  • 8
    • 0025600971 scopus 로고
    • DNA specificity of the Cre recombinase resides in the 25 kDa carboxyl domain of the protein
    • Hoess R.H., Abremski K., Irwin S., Kendall M., Mack A. DNA specificity of the Cre recombinase resides in the 25 kDa carboxyl domain of the protein. J. Mol. Biol. 216:1990;873-882
    • (1990) J. Mol. Biol. , vol.216 , pp. 873-882
    • Hoess, R.H.1    Abremski, K.2    Irwin, S.3    Kendall, M.4    MacK, A.5
  • 9
    • 0026537332 scopus 로고
    • Lambda Int protein bridges between higher order complexes at two distant chromosomal loci attL and attR
    • Kim S., Landy A. Lambda Int protein bridges between higher order complexes at two distant chromosomal loci attL and attR. Science. 256:1992;198-203
    • (1992) Science , vol.256 , pp. 198-203
    • Kim, S.1    Landy, A.2
  • 10
    • 0025223119 scopus 로고
    • Mapping of a higher order protein-DNA complex: Two kinds of long-range interactions in lambda attL
    • Kim S., Moitoso de Vargas L., Nunes-Düby S.E., Landy A. Mapping of a higher order protein-DNA complex two kinds of long-range interactions in lambda attL. Cell. 63:1990;773-781
    • (1990) Cell , vol.63 , pp. 773-781
    • Kim, S.1    Moitoso De Vargas, L.2    Nunes-Düby, S.E.3    Landy, A.4
  • 11
    • 0023179984 scopus 로고
    • Homology-dependent interactions in phage lambda site-specific recombination
    • Kitts P.A., Nash H.A. Homology-dependent interactions in phage lambda site-specific recombination. Nature. 329:1987;346-348
    • (1987) Nature , vol.329 , pp. 346-348
    • Kitts, P.A.1    Nash, H.A.2
  • 12
    • 0027946737 scopus 로고
    • Position and direction of strand exchange in bacteriophage HK022 integration
    • Kolot M., Yagil E. Position and direction of strand exchange in bacteriophage HK022 integration. Mol. Gen. Genet. 245:1994;623-627
    • (1994) Mol. Gen. Genet. , vol.245 , pp. 623-627
    • Kolot, M.1    Yagil, E.2
  • 13
    • 0001656001 scopus 로고    scopus 로고
    • Flexibility in DNA recombination: Structure of the lambda integrase catalytic core (see comments)
    • Kwon H.J., Tirumalai R., Landy A., Ellenberger T. Flexibility in DNA recombination structure of the lambda integrase catalytic core (see comments). Science. 276:1997;126-131
    • (1997) Science , vol.276 , pp. 126-131
    • Kwon, H.J.1    Tirumalai, R.2    Landy, A.3    Ellenberger, T.4
  • 14
    • 0024386798 scopus 로고
    • Dynamic, structural, and regulatory aspects of lambda site-specific recombination
    • Landy A. Dynamic, structural, and regulatory aspects of lambda site-specific recombination. Annu. Rev. Biochem. 58:1989;913-949
    • (1989) Annu. Rev. Biochem. , vol.58 , pp. 913-949
    • Landy, A.1
  • 15
    • 0025213120 scopus 로고
    • Genetic analysis of bacteriophage lambda integrase interactions with arm-type attachment site sequences
    • Lee E.C., Gumport R.I., Gardner J.F. Genetic analysis of bacteriophage lambda integrase interactions with arm-type attachment site sequences. J. Bacteriol. 172:1990;1529-1538
    • (1990) J. Bacteriol. , vol.172 , pp. 1529-1538
    • Lee, E.C.1    Gumport, R.I.2    Gardner, J.F.3
  • 16
    • 0022373046 scopus 로고
    • Generation of single base-pair deletions, insertions, and substitutions by a site-specific recombination system
    • Leong J.M., Nunes-Düby S.E., Landy A. Generation of single base-pair deletions, insertions, and substitutions by a site-specific recombination system. Proc. Natl Acad. Sci. USA. 82:1985;6990-6994
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 6990-6994
    • Leong, J.M.1    Nunes-Düby, S.E.2    Landy, A.3
  • 18
    • 0024295418 scopus 로고
    • Autonomous DNA binding domains of lambda integrase recognize two different sequence families
    • Moitoso de Vargas L., Pargellis C.A., Hasan N.M., Bushman E.W., Landy A. Autonomous DNA binding domains of lambda integrase recognize two different sequence families. Cell. 54:1988;923-929
    • (1988) Cell , vol.54 , pp. 923-929
    • Moitoso De Vargas, L.1    Pargellis, C.A.2    Hasan, N.M.3    Bushman, E.W.4    Landy, A.5
  • 19
    • 0025147545 scopus 로고
    • Specificity determinants in the attachment sites of bacteriophages HK022 and lambda
    • Nagaraja R., Weisberg R.A. Specificity determinants in the attachment sites of bacteriophages HK022 and lambda. J. Bacteriol. 172:1990;6540-6550
    • (1990) J. Bacteriol. , vol.172 , pp. 6540-6550
    • Nagaraja, R.1    Weisberg, R.A.2
  • 20
    • 0003796783 scopus 로고    scopus 로고
    • R.C. III Curtiss, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, W.S. Reznikoff, M. Riley, M. Schaechter, & H.E. Umbarger. Washington, DC: ASM Press
    • Nash H.A. Curtiss R.C. III, Ingraham J.L., Lin E.C.C., Low K.B., Magasanik B., Reznikoff W.S., Riley M., Schaechter M., Umbarger H.E. Escherichia coli and Salmonella: Cellular and Molecular Biology. 1996;2363-2376 ASM Press, Washington, DC
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology , pp. 2363-2376
    • Nash, H.A.1
  • 21
    • 0023667024 scopus 로고
    • Site-specific recombination intermediates trapped with suicide substrates
    • Nunes-Düby S.E., Matsumoto L., Landy A. Site-specific recombination intermediates trapped with suicide substrates. Cell. 50:1987;779-788
    • (1987) Cell , vol.50 , pp. 779-788
    • Nunes-Düby, S.E.1    Matsumoto, L.2    Landy, A.3
  • 23
    • 0024347587 scopus 로고
    • Structure and function of the nun gene and the immunity region of the lambdoid phage HK022
    • Oberto J., Weisberg R.A., Gottesman M.E. Structure and function of the nun gene and the immunity region of the lambdoid phage HK022. J. Mol. Biol. 207:1989;675-693
    • (1989) J. Mol. Biol. , vol.207 , pp. 675-693
    • Oberto, J.1    Weisberg, R.A.2    Gottesman, M.E.3
  • 24
    • 0023022809 scopus 로고
    • The interaction of recombination proteins with supercoiled DNA: Defining the role of supercoiling in lambda integrative recombination
    • Richet E., Abcarian P., Nash H.A. The interaction of recombination proteins with supercoiled DNA defining the role of supercoiling in lambda integrative recombination. Cell. 46:1986;1011-1021
    • (1986) Cell , vol.46 , pp. 1011-1021
    • Richet, E.1    Abcarian, P.2    Nash, H.A.3
  • 25
    • 0023854278 scopus 로고
    • Synapsis of attachment sites during lambda integrative recombination involves capture of a naked DNA by a protein-DNA complex
    • Richet E., Abcarian P., Nash H.A. Synapsis of attachment sites during lambda integrative recombination involves capture of a naked DNA by a protein-DNA complex. Cell. 52:1988;9-17
    • (1988) Cell , vol.52 , pp. 9-17
    • Richet, E.1    Abcarian, P.2    Nash, H.A.3
  • 26
    • 0020361203 scopus 로고
    • Bacteriophage lambda int protein recognizes two classes of sequence in the phage att site: Characterization of arm-type sites
    • Ross W., Landy A. Bacteriophage lambda int protein recognizes two classes of sequence in the phage att site characterization of arm-type sites. Proc. Natl Acad. Sci. USA. 79:1982;7724-7728
    • (1982) Proc. Natl Acad. Sci. USA , vol.79 , pp. 7724-7728
    • Ross, W.1    Landy, A.2
  • 27
    • 0020537076 scopus 로고
    • Patterns of lambda Int recognition in the regions of strand exchange
    • Ross W., Landy A. Patterns of lambda Int recognition in the regions of strand exchange. Cell. 33:1983;261-272
    • (1983) Cell , vol.33 , pp. 261-272
    • Ross, W.1    Landy, A.2
  • 28
    • 0018691250 scopus 로고
    • Interaction of int protein with specific sites on lambda att DNA
    • Ross W., Landy A., Kikuchi Y., Nash H.A. Interaction of int protein with specific sites on lambda att DNA. Cell. 18:1979;297-307
    • (1979) Cell , vol.18 , pp. 297-307
    • Ross, W.1    Landy, A.2    Kikuchi, Y.3    Nash, H.A.4
  • 29
    • 0020482985 scopus 로고
    • Biochemical analysis of att-defective mutants of the phage lambda site-specific recombination system
    • Ross W., Shulman M.J., Landy A. Biochemical analysis of att-defective mutants of the phage lambda site-specific recombination system. J. Mol. Biol. 156:1982;505-522
    • (1982) J. Mol. Biol. , vol.156 , pp. 505-522
    • Ross, W.1    Shulman, M.J.2    Landy, A.3
  • 31
    • 0030832562 scopus 로고    scopus 로고
    • Relating primary structure to function in the Escherichia coli XerD site-specific recombinase
    • Spiers A.J., Sherratt D.J. Relating primary structure to function in the Escherichia coli XerD site-specific recombinase. Mol. Microbiol. 24:1997;1083-1094
    • (1997) Mol. Microbiol. , vol.24 , pp. 1083-1094
    • Spiers, A.J.1    Sherratt, D.J.2
  • 33
    • 0030924382 scopus 로고    scopus 로고
    • The catalytic domain of lambda site-specific recombinase
    • Tirumalai R.S., Healey E., Landy A. The catalytic domain of lambda site-specific recombinase. Proc. Natl Acad. Sci. USA. 94:1997;6104-6109
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 6104-6109
    • Tirumalai, R.S.1    Healey, E.2    Landy, A.3
  • 34
    • 0024332396 scopus 로고
    • Determinants of site-specific recombination in the lambdoid coliphage HK022. An evolutionary change in specificity
    • Yagil E., Dolev S., Oberto J., Kislev N., Ramaiah N., Weisberg R.A. Determinants of site-specific recombination in the lambdoid coliphage HK022. An evolutionary change in specificity. J. Mol. Biol. 207:1989;695-717
    • (1989) J. Mol. Biol. , vol.207 , pp. 695-717
    • Yagil, E.1    Dolev, S.2    Oberto, J.3    Kislev, N.4    Ramaiah, N.5    Weisberg, R.A.6
  • 35
    • 0029082073 scopus 로고
    • Identifying determinants of recombination specificity: Construction and characterization of chimeric bacteriophage integrases
    • Yagil E., Dorgai L., Weisberg R.A. Identifying determinants of recombination specificity Construction and characterization of chimeric bacteriophage integrases. J. Mol. Biol. 252:1995;163-177
    • (1995) J. Mol. Biol. , vol.252 , pp. 163-177
    • Yagil, E.1    Dorgai, L.2    Weisberg, R.A.3
  • 36
    • 0031573477 scopus 로고    scopus 로고
    • Site-specific recombination in plane view
    • Yang W., Mizuuchi K. Site-specific recombination in plane view. Structure. 5:1997;1401-1406
    • (1997) Structure , vol.5 , pp. 1401-1406
    • Yang, W.1    Mizuuchi, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.