Alu-DNA repeat-binding protein p68 is a part of alu-RNA containing α- RNP

European Journal of Biochemistry

Volumn 267, Issue 8, 2000, Pages 2362-2371

  Lukyanov, Dmitry V ^a   Urusuva, Maria E ^a   Shcherba, Ksenia M ^b   Podgornaya, Olga I ^a  

^a INSTITUTE OF CYTOLOGY   (Russian Federation)

^b Ctrl Res Institute for Materials   (Russian Federation)

Author keywords

Alu DNA binding proteins; Alu repeat; Alu RNA containing RNP particles; Antibodies; Site specific DNA protein binding

Indexed keywords

DNA BINDING PROTEIN; DNA DIRECTED RNA POLYMERASE III; OLIGONUCLEOTIDE;

ARTICLE; BINDING SITE; COMPLEX FORMATION; DNA PURIFICATION; GEL MOBILITY SHIFT ASSAY; HUMAN; HUMAN CELL; MOLECULAR WEIGHT; PRIORITY JOURNAL; PROTEIN ANALYSIS; SOUTHERN BLOTTING; WESTERN BLOTTING;

ALU ELEMENTS; BASE SEQUENCE; BINDING SITES; DNA-BINDING PROTEINS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FLUORESCENT ANTIBODY TECHNIQUE; HELA CELLS; HUMANS; IMMUNOHISTOCHEMISTRY; MICROSCOPY, IMMUNOELECTRON; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; OLIGONUCLEOTIDES; PROMOTER REGIONS (GENETICS); RIBONUCLEOPROTEINS; RNA POLYMERASE III; RNA-BINDING PROTEINS; SEQUENCE ALIGNMENT; SPERMATOZOA;

EID: 0034009166     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1432-1327.2000.01248.x     Document Type: Article

References (42)

1. 1. Deininger, P.L. (1989) SINEs: short interspersed repeated DNA elements in higher eucaryotes. In Mobile DNA (Berg, D.E. & Howe, M.M., eds), pp. 619-636. American Society for Microbiology, Washington, DC.
2. 2. Rogers, J.H. (1985) The origin and evolution of retroposons. Nature 317, 765-766.
3. 3. Deininger, P.L., Batzer, M.A., Hutchison, C.A. & Edgell, M.H. (1992) Master genes in mammalian repetitive DNA amplification. Trends Genet. 8, 307-311.
4. 4. Allan, M. & Paul, J. (1984) Transcription in vivo of an Alu family member upstream from the human E-globin gene. Nucleic Acids Res. 12, 1193-1200.
5. 5. Lim, D., Coleman, R.T., Assman, G. & Frossard, P.M. (1986) Deletion of an Alu sequence in the 5′ of the apoliprotein AI gene associated with decreased serum MDL-cholesterol levels. Am. J. Hum. Genet. 39, 209.
6. 6. Calos, M.P. & Miller, G.N. (1980) Transposable elements. Cell 20, 579-595.
7. 7. Korenberg, J.R. & Rykowski, M.C. (1988) Human genom organization: alu, LINES and the molecular structure of metaphase chromosome bands. Cell 53, 391-400.
8. 8. Paulson, K.E. & Scmid, C.W. (1986) Transcriptional inactivity of Alu repeats in HeLa cells. Nucleic Acids Res. 14, 6145-6158.
9. 9. Bovia, F. & Strub, K.J. (1996) The signal recognition particle and related small cytoplasmic ribonucleoprotein particles. Cell Sci. 109, 2601-2608.
10. 10. Chesnokov, I.N. & Scmid, C.W. (1996) Flanking sequences of an Alu source stimulate transcription in vivo by interacting with sequencespecific transcription factors. J. Mol. Evol. 42, 30-36.
11. 11. Ullu, E. & Tschudi, C. (1984) Alu sequences are processed 7SL RNA genes. Nature 312, 171-172.
12. 12. Konstantinova, I.M., Petukhova, O.A., Kulitchkova, V.A., Turoverova, L.V., Volkova, I.V., Ilkaeva, O.P., Kozhuharova, I.V. & Ermolaeva, U.B. (1995) A new class of RNP particles containing small RNA homologous to short dispersed DNA repetitive sequences. Molek. Biol. (Russian) 29, 761-771.
13. 13. Konstantinova, I.M., Turoverova, L.V., Petukhova, O.A. & Vorob'ev, V.I. (1984) Cortisoleinduced small RNP tightly bound to chromatin. FEBS Lett. 177, 241-245.
14. 14. Konstantinova, I.M., Kozlov, Yu. V, Kulitchkova, VA. & Petukhova, O.A. (1988) Small cytoplasmic RNA associated with polyadenilated RNA is involved in the hormonal regulation of gene expression. FEBS Lett. 238, 320-324.
15. 15. Perelygina, L.M., Tomilin, N.V & Podgornaya, O.I. (1987) Various characteristics of proteins from HeLa cells specifically binding to the human ALU sequence. Molek. Biol. (Russian) 21, 1610-1619.
16. 16. Chesnokov, I., Bozhkov, V., Popov, B. & Tomilin, N. (1991) Binding specificity of human nuclear protein interacting with the Alu-family DNA repeats. Biochem. Biophys. Res. Commun. 178, 613-619.
17. 17. Chiang, Y. & Vishwanatha, J.K. (1996). Characterization of the HeLa cell 35 kDa Alu-element binding protein. Mol. Cell Biol. 155, 131-138.
18. 18. Chesnokov, I.N. & Schmid, C.W. (1995) Specific Alu binding protein from human sperm chromatin prevents DNA methylation. J. Biol. Chem. 270, 18539-18542.
19. 19. Podgornaya, O.I., Perelygina, L.M. & Tomilin, N.V. (1988). Multi-site binding of human nuclear protein to the Alu-family repeated DNA. FEBS Lett. 232, 99-102.
20. 20. Kropotov, A.V & Tomilin, N.V. (1996) Evidence for a regulatory protein complex on RNA polymerase III promoter of human retroposons of Alu family. Genetics 98, 223-233.
21. 21. Kropotov, A.V. & Tomilin, N.V. (1996) A human B-box-binding protein downregulated in adenovirus 5-transformed human cells. FEBS Lett. 386, 43-46.
22. 22. Tsuchiya, T., Saegusa, Y, Taira, T., Mimori, T., Iguchi-Ariga, S.M. & Ariga, H. (1998) Ku antigen binds to Alu family DNA. J. Biochem. (Tokyo) 123, 120-127.
23. 23. Berezney, R. & Coffey, D.S. (1974) Identification of a nuclear protein matrix. Biochem. Biophys. Res. Commun. 60, 1410-1417.
24. 24. Rubin, C.M., Houck, C.M., Deininger, P.L., Friedmann, T. & Schmid, C.W. (1980) Partial nucleotide sequence of the 300-nucleotide interspersed repeated human DNA sequences. Nature 284, 372-374.
25. 25. Sambrook, J., Fritsch, E.F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
26. 26. Strauss, F. & Varshavsky, A. (1984) A protein binds to a satellite DNA repeat at three specific sites that would be brought into mutual proximity by DNA folding in the nucleosome. Cell 37, 889-901.
27. 27. Laemmli, U.K. (1970) Cleavage of the structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-682.
28. 28. Towbin, H.T., Stahelin, T. & Cordon, J. (1979) Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc. Natl Acad. Sci. USA 76, 4350-4354.
29. 29. Dean, P.D.G., Johnson, W.S. & Middle, F.A. (1985). Affinity Chromatography. IRL Press, Oxford, UK.
30. 30. Dunn, M.J. (1993). Gel Electrophoresis: Proteins. BIOS Scientific Publishers, Oxford UK.
31. 31. Gooderham, K. & Jeppesen, P. (1983) Chinese hamster metaphase chromosomes isolated under physiological conditions. A partial characterization of associated non-histone proteins and protein cores. Exp. Cell Res. 144, 1-14.
32. 32. Miller, O.L. & Hamkalo, B.A. (1972) Visualization of RNA-synthesis on chromosomes. Int. Rev. Cyt. 33, 1-26.
33. 33. Konstantinova, I.M., Vetzcker, R., Petukhova, O.A., Chesnokov, I.N., Volkova, I.V., Turoverova, L.V., Ermolaeva, Yu. B. & Gause, L.N. (1997) A new class of small RNP (α-RNP) containing antisense RNA in K-562 cell line. III. DNA-binding activity of nuclear α-RNP. Ontogenez (Russian) 28, 171-177.
34. 34. Troelstra, C. & Jaspers, N.G.J. (1994) Recombination and repair. Ku starts at the end. Curr. Biol. 4, 1149-1151.
35. 35. Genersch, E., Eckerskorn, C., Lottspeich, F., Herzog, C., Kuhn, K. & Poschl, E. (1995) Purification of the sequence-specific transcription factor CTCBF, involved in the control of human collagen IV: subunits with homology to Ku antigen. EMBO J. 14, 791-800.
36. 36. Li, G.C., Yang, S.-H., Kim, D., Nussenzweig, A., Ouyang, H., Wei, J., Burgman, P. & Li, L. (1995) Suppression of heat-induced hsp70 expression by the 70-kDa subunit of the human Ku autoantigen. Proc. Natl Acad. Sci. USA 92, 4512-4516.
37. 37. Chang, D.-Y. & Maraia, R.J. (1993) A cellular protein bind B1 and Alu small cytoplasmic RNAs in vitro. J. Biol. Chem. 268, 6423-6428.
38. 38. Chang, D.-Y, Nelson, B., Bilyeu, T., Hsu, K., Darligton, G.J. & Maraia, R.J. (1994) A human Alu RNA-binding protein whose expression is associated with accumulation of small cytoplasmic Alu RNA. Mol. Cell. Biol. 14, 3949-3959.
39. 39. Kaplan, E.S., Murray, J., Sylvester, J.E., Gonzalez, I.L., O'Connor, P.J., Doering, J.L., Muenke, M., Emanuel, B.S. & Zasloff, M. (1993) The topographic organization of repetitive DNA in the human nucleolus. Genomics 15, 123-132.
40. 40. Manuelidis, L. (1997) Interphase chromosome position and structure during silencing, transcription and replication. In Nuclear Organization, Chromatin Structure, and Gene Expression (van Driel, R. & Otte, A.P., eds), pp. 145-168. Oxford University Press, Oxford, UK.
41. 41. Chu, W., Ballard, R., Carpick, B.W., Williams, B.R. & Schmid, C.W. (1998) Potential Alu function: regulation of the activity of double-stranded RNA-activated kinase PKR. Mol. Cell Biol. 18, 58-68.
42. 42. Besse, S., Rebouillat, D., Marie, I., Puvion Dutilleul, F. & Hovanessian, A.G. (1998) Ultrastructural localization of interferon-inducible double-stranded RNA-activated enzymes in human cells. Exp. Cell Res. 239, 379-392.