Identification and characterization of BPTF, a novel bromodomain transcription factor

Genomics

Volumn 63, Issue 1, 2000, Pages 35-39

  Jones, Michael H ^a   Hamana, Naeko ^a   Shimane, Miyuki ^a  

^a CHUGAI PHARMACEUTICAL CO LTD   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; TRANSCRIPTION FACTOR;

AMINO ACID SEQUENCE; ARTICLE; DATA BASE; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; GENE MAPPING; HUMAN; HUMAN TISSUE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; SEQUENCE ANALYSIS; TRANSCRIPTION REGULATION;

EID: 0034000719     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1999.6070     Document Type: Article

References (39)

1. Aasland R., Gibson T. J., Steward A. F. The PHD finger: Implications for chromatin-mediated transcriptional regulation. Trends Biochem. Sci. 20:1995;56-59.
2. Barlev N. A., Poltoratsky V., Owen-Hughes T., Ying C., Liu L., Workman J. L., Berger S. L. Repression of GCN5 histone acetyltransferase activity via bromodomain-mediated binding and phosphorylation by the Ku-DNA-dependent protein kinase complex. Mol. Cell. Biol. 18:1998;1349-1358.
3. Borrow J., Stanton V. P., Andresen M. J., Becher R., Behm F. G., Chaganti R. S. K., Civin C. I., Disteche C., Dube I., Frischauf A. M., Horsman D., Mitelman F., Volinia S., Watmore A. E., Housman D. E. The translocation t(8;16)(p11;p13) of acute myeloid leukaemia fuses a putative acetyltransferase to the CREB-binding protein. Nat. Genet. 14:1996;33-41.
4. Bowser R. Assignment of the human FAC1 gene to chromosome 17q24 by fluorescence in situ hybridization. Genomics. 38:1996;455-457.
5. Bowser R., Giambrone A., Davies P. FAC1, a novel gene identified with the monoclonal antibody Alz50, is developmentally regulated in human brain. Dev. Neurosci. 17:1995;20-37.
6. Collins A., Frezal J., Teague J., Morton N. E. A metric map of humans: 23,500 loci in 850 bands. Proc. Natl. Acad. Sci. USA. 93:1996;14771-14775.
7. Courey A. J., Holtzman D. A., Jackson S. P., Tjian R. Synergistic activation by the glutamine-rich domains of human transcription factor Sp1. Cell. 59:1989;827-836.
8. Denis G. V., Green M. R. A novel, mitogen-activated nuclear kinase is related to a Drosophila developmental regulator. Genes Dev. 10:1996;261-271.
9. Dhalluin C., Carlson J. E., Zeng L., He C., Aggarwal A. K., Zhou M. M. Structure and ligand of a histone acetyltransferase bromodomain. Nature. 399:1999;491-496.
10. Dubois B. L., Naylor S. Characterization of NIGMS/rodent somatic cell hybrid mapping panel 2 by PCR. Genomics. 16:1993;315-319.
11. Dunaief J. L., Strober B. E., Guha S., Khavari P. A., Alin K., Luban J., Begemann M., Crabtree G. R., Goff S. P. The retinoblastoma protein and BRG1 form a complex and cooperate to induce cell cycle arrest. Cell. 79:1994;119-130.
12. Green R. J., Phillips D. L., Chen A. T., Reidy J. A., Ragab A. H. Effects of folate in culture medium on common fragile sites in lymphocyte chromosomes from normal and leukemic children. Hum. Genet. 81:1988;9-12.
13. Gu Y., Nakamura T., Alder H., Prasad R., Canaani O., Cimino G., Croce C. M., Canaani E. The t(4;11) chromosome translocation of human acute leukemias fuses the ALL-1 gene, related to Drosophila trithorax, to the AF-4 gene. Cell. 71:1992;701-708.
14. Haynes S. R., Mozer B. A., Bhatai-Dey N., Dawid I. B. The Drosophila fsh locus, a maternal effect homeotic gene, encodes apparent membrane proteins. Dev. Biol. 134:1989;246-257.
15. Heery D. M., Kalkhoven E., Hoare S., Parker M. G. A signature motif in transcriptional co-activators mediates binding to nuclear receptors. Nature. 387:1997;733-736.
16. Hu Y. F., Hao Z. L., Li R. Chromatin remodeling and activation of chromosomal DNA replication by an acidic transcriptional activation domain from BRCA1. Genes Dev. 13:1999;637-642.
17. Jeanmougin F., Wurtz J. M., Le Douarin B., Chambon P., Losson R. The bromodomain revisited. Trends Biochem. Sci. 22:1997;151-153.
18. Jones M. H., Hamana N., Nezu J., Shimane M. A novel family of bromodomain genes. Genomics. 63:2000.
19. Jones M. H., Khwaja O. S. A., Briggs H., Lambson B., Davey P. M., Chalmers J., Zhou C-Y., Walker E. M., Zhang Y., Todd C., Ferguson-Smith M. A., Affara N. A. A set of ninety-seven overlapping yeast artificial chromosome clones spanning the Y chromosome euchromatin. Genomics. 24:1994;266-275.
20. Jones M. H., Zhang Y., Tirosvoutis K. N., Davey P. M., Webster A. R., Walsh D., Spurr N. K., Affara N. A. Chromosomal assignment of 311 sequences transcribed in human adult testis. Genomics. 40:1997;155-167.
21. Kaneko Y., Frizzera G., Maseki N., Sakurai M., Komada Y., Sakurai M., Hiyoshi Y., Nakadate H., Takeda T. A novel translocation, t(9;17)(q34;q23), in aggressive childhood lymphoblastic lymphoma. Leukemia. 2:1988;745-748.
22. Klugbauer S., Rabes H. M. The transcription coactivator HTIF1 and a related protein are fused to the RET receptor tyrosine kinase in childhood papillary thyroid carcinomas. Oncogene. 18:1999;4388-4393.
23. Koken M. H., Saib A., deThe H. A. A C4HC3 zinc finger motif. C.R. Acad. Sci. III. 318:1995;733-739.
24. Lastowska M., Van Roy N., Bown N., Speleman F., Lunec J., Strachan T., Pearson A. D., Jackson M. S. Molecular cytogenetic delineation of 17q translocation breakpoints in neuroblastoma cell lines. Genes Chromosomes Cancer. 23:1998;116-122.
25. Le Douarin B., Zechel C., Garnier J. M., Lutz Y., Tora L., Pierrat P., Heery D., Gronemeyer H., Chambon P., Losson R. The N-terminal part of TIF1, a putative mediator of the ligand-dependent activation function (AF-2) of nuclear receptors, is fused to B-raf in the oncogenic protein T18. EMBO J. 14:1995;2020-2033.
26. Lill N. L., Grossman S. R., Ginsberg D., DeCaprio J., Livingston D. M. Binding and modulation of p53 by p300/CBP coactivators. Nature. 387:1997;823-827.
27. Miki T., Fleming T. P., Crescenzi M., Molloy C. J., Blam S. B., Reynolds S. H., Anderson S. A. Development of a highly efficient expression cDNA cloning system: Application to oncogene isolation. Proc. Natl. Acad. Sci. USA. 88:1991;5167-5171.
28. Ohno H., Doi S., Fukuhara S., Yamasowa M., Kannagi M., Ishikura H., Nishikori M., Uchino H. Establishment of a new myeloid leukemia cell line (TK-1), and isolation of cells having a translocation involving a band 17q23. Int. J. Cancer. 37:1986;761-767.
29. Robbins J., Dilworth S. M., Laskey R. A., Dingwall C. Two interdependent basic domains in nucleoplasmin nuclear targeting sequence: Identification of a class of bipartite nuclear targeting sequence. Cell. 64:1991;615-623.
30. Saha V., Chaplin T., Gregorini A., Ayton P., Young B. D. The leukemia-associated-protein (LAP) domain, a cysteine-rich motif, is present in a wide range of proteins, including MLL, AF10, and MLLT6 proteins. Proc. Natl. Acad. Sci. USA. 92:1995;9737-9741.
31. Shikama N., Lyon J., La Thangue N. B. The p300/CBP family: Integrating signals with transcription factors and chromatin. Trends Cell Biol. 7:1997;230-236.
32. Tamkun J. W., Deuring R., Scott M. P., Kissinger M., Pattatucci A. M., Kaufman T. C., Kennison J. A. Brahma: A regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2. Cell. 68:1992;561-572.
33. Tkachuk D. C., Kohler S., Cleary M. L. Involvement of a homolog of Drosophila trithorax by 11q23 chromosomal translocations in acute leukemias. Cell. 71:1992;691-700.
34. Torchia J., Rose D. W., Inostroza J., Kamei Y., Westin F., Glass C. K., Rosenfeld M. G. The transcriptional co-activator p/CIP binds CBP and mediates nuclear-receptor function. Nature. 387:1997;677-684.
35. Walter M. A., Spillet D. J., Thomas P., Weissenbach J., Goodfellow P. N. A method for constructing radiation hybrid maps of whole genomes. Nat. Genet. 7:1994;22-28.
36. Wilson R., Ainscough R., Anderson K., Baynes C., Berks M., Bonfield J., Burton J., Connell M., Copsey T., Cooper J., Coulson A., Craxton M., Dear S., Du Z., Durbin R., Favello A., Fulton L., Gardner A., Green P., Hawkins T., Hillier L., Jier M., Johnston L., Jones M., Kershaw J., Kirsten J., Laister N., Latreille P., Lightning J., Lloyd C., McMurray A., Mortimore B., O'Callaghan M., Parsons J., Percy C., Rifken L., Roopra A., Saunders D., Shownkeen R., Smaldon N., Smith A., Sonnhammer E., Staden R., Sulston J., Thierry-Mieg J., Thomas K., Vaudin M., Vaughan K., Waterston R., Watson A., Weinstock L., Wilkinson-Sproat J., Wohldman P. 2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans. Nature. 368:1994;32-38.
37. Yang X-J., Orgyzco V. O., Nishikawa J., Howard B. H., Nakatani Y. A p300/CBP-associated factor that competes with the adenoviral oncoprotein E1A. Nature. 382:1996;319-324.
38. Zhang Y., LeRoy G., Seelig H. P., Lane W. S., Reinberg D. The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities. Cell. 95:1998;279-289.
39. Zhu P., Bowser R. Identification and analysis of the complete cDNA sequence for the human FAC1 gene. Biochim. Biophys. Acta. 1309:1996;5-8.