-
1
-
-
0017411710
-
The protein data bank: A computer based archival file for macromolecular structures
-
Bernstein FC, Koetzle TF, Williams GJB, Meyer EF Jr, Brice MD, Rodgers JR, Kennard O, Shimanouchi T, Tasumi M. 1977. The Protein Data Bank: A computer based archival file for macromolecular structures. J Mol Biol 112:535-542.
-
(1977)
J Mol Biol
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer E.F., Jr.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
3
-
-
0026530977
-
Natural protein proteinase inhibitors and their interactions with proteinases
-
Bode W, Huber R. 1992. Natural protein proteinase inhibitors and their interactions with proteinases. Eur J Biochem 204:433-451.
-
(1992)
Eur J Biochem
, vol.204
, pp. 433-451
-
-
Bode, W.1
Huber, R.2
-
5
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
(Collaborative Computational Project Number 4). 1994. The CCP4 Suite: Programs for protein crystallography. Acta Crystallogr D50:760-763.
-
(1994)
Acta Crystallogr
, vol.D50
, pp. 760-763
-
-
-
6
-
-
0000538815
-
Analytical molecular surface calculation
-
Connolly ML. 1983. Analytical molecular surface calculation. J Appl Crystallogr 15:548-558.
-
(1983)
J Appl Crystallogr
, vol.15
, pp. 548-558
-
-
Connolly, M.L.1
-
7
-
-
0015350850
-
The influence of the geometric properties of the active centre on the specificity of α-chymotrypsin catalysis
-
Dorovska VN, Varfolomeyev SD, Kazanskaya NF, Klyosov AA, Martinek K. 1972. The influence of the geometric properties of the active centre on the specificity of α-chymotrypsin catalysis. FEBS Lett 23:122-124.
-
(1972)
FEBS Lett
, vol.23
, pp. 122-124
-
-
Dorovska, V.N.1
Varfolomeyev, S.D.2
Kazanskaya, N.F.3
Klyosov, A.A.4
Martinek, K.5
-
8
-
-
0026567907
-
Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect
-
Eriksson AE, Baase WA, Zhang X-J, Heinz DW, Blaber M, Baldwin EP, Matthews BW. 1992. Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect. Science 255:178-183.
-
(1992)
Science
, vol.255
, pp. 178-183
-
-
Eriksson, A.E.1
Baase, W.A.2
Zhang, X.-J.3
Heinz, D.W.4
Blaber, M.5
Baldwin, E.P.6
Matthews, B.W.7
-
9
-
-
0018780576
-
Cysteinyl-tRNA synthetase from Escherichia coli does not need an editing mechanism to reject serine and alanine. High binding energy of small groups in specific molecular interactions
-
Fersht AR, Dingwall C. 1979. Cysteinyl-tRNA synthetase from Escherichia coli does not need an editing mechanism to reject serine and alanine. High binding energy of small groups in specific molecular interactions. Biochemistry 18:1245-1249.
-
(1979)
Biochemistry
, vol.18
, pp. 1245-1249
-
-
Fersht, A.R.1
Dingwall, C.2
-
10
-
-
0027462173
-
Principles of protein stability derived from protein engineering experiments
-
Fersht AR, Serrano L. 1993. Principles of protein stability derived from protein engineering experiments. Curr Opin Struct Biol 3:75-83.
-
(1993)
Curr Opin Struct Biol
, vol.3
, pp. 75-83
-
-
Fersht, A.R.1
Serrano, L.2
-
11
-
-
0020172462
-
Refined crystal structure of the molecular complex of Streptomyces griseus protease B, a serine protease, with the third domain of the ovomucoid inhibitor from turkey
-
Fujinaga M, Read RJ, Sielecki AR, Ardelt W, Laskowski M Jr, James MNG. 1982. Refined Crystal structure of the molecular complex of Streptomyces griseus protease B, a serine protease, with the third domain of the ovomucoid inhibitor from turkey. Proc Natl Acad Sci USA 79:4868-4872.
-
(1982)
Proc Natl Acad Sci USA
, vol.79
, pp. 4868-4872
-
-
Fujinaga, M.1
Read, R.J.2
Sielecki, A.R.3
Ardelt, W.4
Laskowski M., Jr.5
James, M.N.G.6
-
14
-
-
0028856716
-
Water molecules participate in proteinase-inhibitor interactions: Crystal structures of Leu18, Ala18, Gly18 variants of turkey ovomucoid inhibitor third domain with Streptomyces griseus proteinase B
-
Huang K, Lu W, Anderson S, Laskowski M Jr, James MNG. 1995. Water molecules participate in proteinase-inhibitor interactions: Crystal structures of Leu18, Ala18, Gly18 variants of turkey ovomucoid inhibitor third domain with Streptomyces griseus proteinase B. Protein Sci 4:1985-1997.
-
(1995)
Protein Sci
, vol.4
, pp. 1985-1997
-
-
Huang, K.1
Lu, W.2
Anderson, S.3
Laskowski M., Jr.4
James, M.N.G.5
-
15
-
-
0025123333
-
The structure of protein-protein recognition sites
-
Janin J, Chothia C. 1990. The structure of protein-protein recognition sites. J Biol Chem 265:16027-16030.
-
(1990)
J Biol Chem
, vol.265
, pp. 16027-16030
-
-
Janin, J.1
Chothia, C.2
-
16
-
-
0022333120
-
Diffraction methods for biological macromolecules. Interactive computer graphics: FRODO
-
Jones TA. 1985. Diffraction methods for biological macromolecules. Interactive computer graphics: FRODO. Methods Enzymol 115:157-171.
-
(1985)
Methods Enzymol
, vol.115
, pp. 157-171
-
-
Jones, T.A.1
-
17
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones TA, Zou JY, Cowan SW, Kjeldgaard D. 1991. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A47:110-119.
-
(1991)
Acta Crystallogr
, vol.A47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, D.4
-
18
-
-
0016350983
-
Amino acid sequence of Streptomyces griseus protease B, a major component of pronase
-
Jurasek L, Carpenter MR, Smillie LB, Gertler A, Levy S, Ericsson LH. 1974. Amino acid sequence of Streptomyces griseus protease B, a major component of pronase. Biochem Biophys Res Commun 61:1095-1100.
-
(1974)
Biochem Biophys Res Commun
, vol.61
, pp. 1095-1100
-
-
Jurasek, L.1
Carpenter, M.R.2
Smillie, L.B.3
Gertler, A.4
Levy, S.5
Ericsson, L.H.6
-
19
-
-
0024375463
-
Energetics of complementary side-chain packing in a protein hydrophobic core
-
Kellis JT, Nyberg K, Fersht AR. 1989. Energetics of complementary side-chain packing in a protein hydrophobic core. Biochemistry 28:4914-4922.
-
(1989)
Biochemistry
, vol.28
, pp. 4914-4922
-
-
Kellis, J.T.1
Nyberg, K.2
Fersht, A.R.3
-
20
-
-
0027995683
-
Detection, delineation, measurement and display of cavities in macromolecular structures
-
Kleywegt GJ, Jones TA. 1994. Detection, delineation, measurement and display of cavities in macromolecular structures. Acta Crystallogr D50:178-185.
-
(1994)
Acta Crystallogr
, vol.D50
, pp. 178-185
-
-
Kleywegt, G.J.1
Jones, T.A.2
-
23
-
-
0031581824
-
1 cavities of serine proteinases
-
1 cavities of serine proteinases. J Mol Biol 226:441-461.
-
(1997)
J Mol Biol
, vol.226
, pp. 441-461
-
-
Lu, W.1
Apostol, I.2
Qasim, M.A.3
Warne, N.4
Wynn, R.5
Zhang, W.L.6
Anderson, S.7
Chiang, Y.W.8
Ogin, E.9
Rothberg, I.10
-
24
-
-
0001099937
-
Traitement statistique des erreurs dans la determination des structures cristallines
-
Luzzati V. 1952. Traitement statistique des erreurs dans la determination des structures cristallines. Acta Crystallogr 5:802-810.
-
(1952)
Acta Crystallogr
, vol.5
, pp. 802-810
-
-
Luzzati, V.1
-
26
-
-
0028304962
-
Satisfying hydrogen bonding potential in proteins
-
McDonald ID, Thornton JM. 1994. Satisfying hydrogen bonding potential in proteins. J Mol Biol 238:777-793.
-
(1994)
J Mol Biol
, vol.238
, pp. 777-793
-
-
McDonald, I.D.1
Thornton, J.M.2
-
27
-
-
0023521842
-
Analysis of the relationship between side-chain conformation and secondary structure in globular proteins
-
McGregor MJ, Islam SA, Sternberg MJE. 1987. Analysis of the relationship between side-chain conformation and secondary structure in globular proteins. J Mol Biol 198:295-310.
-
(1987)
J Mol Biol
, vol.198
, pp. 295-310
-
-
McGregor, M.J.1
Islam, S.A.2
Sternberg, M.J.E.3
-
28
-
-
0002691997
-
Appendix B: Xtalview users' guide. A software system for protein crystallography
-
McRee DE, ed. San Diego, CA: Academic Press
-
McRee DE. 1993. Appendix B: Xtalview users' guide. A software system for protein crystallography. In: McRee DE, ed. Practical protein crystallography. San Diego, CA: Academic Press. pp 303-374.
-
(1993)
Practical Protein Crystallography
, pp. 303-374
-
-
McRee, D.E.1
-
29
-
-
0027932407
-
C-tail valine is a key residue for stabilization of complex between potato inhibitor and carboxypeptidase A
-
Molina MA, Marino C, Oliva B, Aviles FX, Quero E. 1994. C-tail valine is a key residue for stabilization of complex between potato inhibitor and carboxypeptidase A. J Biol Chem 269(34):21467-21472.
-
(1994)
J Biol Chem
, vol.269
, Issue.34
, pp. 21467-21472
-
-
Molina, M.A.1
Marino, C.2
Oliva, B.3
Aviles, F.X.4
Quero, E.5
-
30
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A, Sharp K, Honig B. 1991. Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11:281-296.
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.2
Honig, B.3
-
31
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W. 1996. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307-326.
-
(1996)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
33
-
-
33845280446
-
Comparing the polarities of the amino acids: Side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol and neutral aqueous solution
-
Radzicka A, Wolfenden R. 1988. Comparing the polarities of the amino acids: Side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol and neutral aqueous solution. Biochemistry 27:1664-1670.
-
(1988)
Biochemistry
, vol.27
, pp. 1664-1670
-
-
Radzicka, A.1
Wolfenden, R.2
-
34
-
-
84944812409
-
Improved fourier coefficients for maps using phases from partial structures with errors
-
Read RJ. 1986. Improved Fourier coefficients for maps using phases from partial structures with errors. Acta Crystallogr A42:140-149.
-
(1986)
Acta Crystallogr
, vol.A42
, pp. 140-149
-
-
Read, R.J.1
-
35
-
-
0021102433
-
Structure of the complex of Streptomyces griseus protease B and the third domain of the turkey ovomucoid inhibitor at 1.8 Å resolution
-
Read RJ, Fujinaga M, Sielecki AR, James MNG. 1983. Structure of the complex of Streptomyces griseus protease B and the third domain of the turkey ovomucoid inhibitor at 1.8 Å resolution. Biochemistry 22:4420-4433.
-
(1983)
Biochemistry
, vol.22
, pp. 4420-4433
-
-
Read, R.J.1
Fujinaga, M.2
Sielecki, A.R.3
James, M.N.G.4
-
36
-
-
0003150431
-
Introduction to the protein inhibitors: X-ray crystallography
-
Barrett AJ, Salvesen G, eds. Amsterdam: Elsevier Science Publishers B.V.
-
Read RJ, James MNG. 1986. Introduction to the protein inhibitors: X-ray crystallography. In: Barrett AJ, Salvesen G, eds. Proteinase inhibitors. Amsterdam: Elsevier Science Publishers B.V. pp 301-336.
-
(1986)
Proteinase Inhibitors
, pp. 301-336
-
-
Read, R.J.1
James, M.N.G.2
-
37
-
-
0031718310
-
Homology modeling, model software evaluation: Three related resources
-
Rodriguez R, Chinea G, Lopez N, Pons T, Vriend G. 1998. Homology modeling, model software evaluation: Three related resources. Bioinformatics 14:523-528.
-
(1998)
Bioinformatics
, vol.14
, pp. 523-528
-
-
Rodriguez, R.1
Chinea, G.2
Lopez, N.3
Pons, T.4
Vriend, G.5
-
38
-
-
0014211618
-
On the size of the active site in proteases. I. Papain
-
Schechter I, Berger A. 1967. On the size of the active site in proteases. I. Papain. Biochem Biophys Res Commun 27:157-162.
-
(1967)
Biochem Biophys Res Commun
, vol.27
, pp. 157-162
-
-
Schechter, I.1
Berger, A.2
-
39
-
-
0027208112
-
Rotamers: To be or not to be? An analysis of amino acid side-chain conformations in globular proteins
-
Schrauber H, Eisenhaber F, Argos P. 1993. Rotamers: To be or not to be? An analysis of amino acid side-chain conformations in globular proteins. J Mol Biol 230:592-612.
-
(1993)
J Mol Biol
, vol.230
, pp. 592-612
-
-
Schrauber, H.1
Eisenhaber, F.2
Argos, P.3
-
40
-
-
0031587287
-
Free energies of amino acid side-chain rotamers in α-helices, β-sheets and α-helix N-caps
-
Stapley BJ, Doig AJ. 1997. Free energies of amino acid side-chain rotamers in α-helices, β-sheets and α-helix N-caps. J Mol Biol 272:456-464.
-
(1997)
J Mol Biol
, vol.272
, pp. 456-464
-
-
Stapley, B.J.1
Doig, A.J.2
-
42
-
-
0029147823
-
Intrinsic φ, ψ propensities of amino acids, derived from the coil regions of known structures
-
Swindells MB, MacArthur MW, Thornton JM. 1995. Intrinsic φ, ψ propensities of amino acids, derived from the coil regions of known structures. Nature Struct Biol 2:596-603.
-
(1995)
Nature Struct Biol
, vol.2
, pp. 596-603
-
-
Swindells, M.B.1
MacArthur, M.W.2
Thornton, J.M.3
-
43
-
-
84945074880
-
Conjugate-direction minimization: An improved method for the refinement of macromolecules
-
Tronrud DE. 1992. Conjugate-direction minimization: An improved method for the refinement of macromolecules. Acta Crystallogr A48:912-916.
-
(1992)
Acta Crystallogr
, vol.A48
, pp. 912-916
-
-
Tronrud, D.E.1
|