Evolutionary relationships within a subgroup of HERV-K-related human endogenous retroviruses

Journal of General Virology

Volumn 79, Issue 1, 1998, Pages 61-70

  Zsiros J ^a   Jebbink, M F ^a   Lukashov, V V ^a   Voute P A ^a   Berkhout, B ^a  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

RNA DIRECTED DNA POLYMERASE;

ARTICLE; BONE MARROW; CONTROLLED STUDY; EVOLUTION; HUMAN; HUMAN CELL; HUMAN GENETICS; HUMAN TISSUE; LEUKEMIA CELL; MOUSE MAMMARY TUMOR ONCOVIRUS; NONHUMAN; OPEN READING FRAME; PHYLOGENY; PLACENTA; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RETROPOSON; RETROVIRUS; SEQUENCE HOMOLOGY; T LYMPHOCYTE;

HUMAN ENDOGENOUS RETROVIRUSES; MAMMARY TUMOR ONCOVIRUS; MOUSE MAMMARY TUMOR VIRUS; ONCOVIRINAE; RNA VIRUSES; UNIDENTIFIED RETROVIRUS;

EID: 0031984634     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-79-1-61     Document Type: Article

References (31)

1. Best, S., Letissier, P., Towers, G. & Stoye, J. P. (1996). Positional cloning of the mouse retrovirus restriction gene FV1. Nature 382, 826-829.
2. Chirgwin, J. M., Przybyla, A. E., McDonald, R. J. & Rutter, W. J. (1979). Isolation and biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry 18, 5294-5299.
3. Coffin, J. M. (1996). Retrovirus restriction revealed. Nature 382, 762-763.
4. Craig, L. C., Pirtle, I. L., Gracy, R. W. & Pirtle, R. M. (1991). Characterization of the transcription unit and two processed pseudogenes of chimpanzee triosephosphate isomerase (TPI). Gene 99, 217-227.
5. Das, A. T., Klaver, B. & Berkhout, B. (1995). Reduced replication of human immunodeficiency virus type 1 mutants that use reverse transcription primers other than the natural tRNA(3Lys). Journal of Virology 69, 3090-3097.
6. Deen, K. C. & Sweet, R. W. (1986). Murine mammary tumor virus pol-related sequences in human DNA: characterization and sequence comparison with the complete murine mammary tumor virus pol gene. Journal of Virology 57, 422-432.
7. Felsenstein, J. (1989). PHYLIP-phylogeny inference package (version 3.2). Cladistics 5, 164-166.
8. Felsenstein, J. (1990). PHYLIP manual 3.2.
9. Franklin, G. C., Chretien, S., Hanson, I. M., Rochefort, H., May, F. E. B. & Westley, B. R. (1988). Expression of human sequences related to those of mouse mammary tumor virus. Journal of Virology 62, 1203-1210.
10. Goff, S. P. (1996). Operating under a Gag order: a block against incoming virus by the Fv1 gene. Cell 86, 691-693.
11. Greaves, M. F. & Alexander, F. E. (1993). An infectious etiology for common acute lymphoblastic leukemia in childhood? Leukemia 7, 349-360.
12. Kumar, S., Tamura, K. & Nei, M. (1993). Molecular evolutionary genetics analysis (MEGA). Pennsylvania State University, University Park, Penn., USA.
13. Li, M. D., Bronson, D. L., Lemke, T. D. & Faras, A. J. (1995). Restricted expression of new HERV-K members in human teratocarcinoma cells. Virology 208, 733-741.
14. Li, M. D., Lemke, T. D., Bronson, D. L. & Faras, A. J. (1996). Synthesis and analysis of a 640-bp pol region of novel human endogenous retroviral sequences and their evolutionary relationships. Virology 217, 1-10.
15. Lower, R., Lower, J. & Kurth, R. (1996). The viruses in all of us: characteristics and biological significance of human endogenous retrovirus sequences. Proceedings of the National Academy of Sciences, USA 93, 5177-5184.
16. Lukashov, V. V., Kuiken, C. L. & Goudsmit, J. (1995). Intrahost human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period. Journal of Virology 69, 6911-6916.
17. Mariani-Costantini, R., Horn, T. & Callahan, R. (1989). Ancestry of a human endogenous retrovirus family. Journal of Virology 63, 4982-4985.
18. Medstrand, P. & Blomberg, J. (1993). Characterization of novel reverse transcriptase encoding human endogenous retroviral sequences similar to type A and type B retroviruses: differential transcription in normal human tissues. Journal of Virology 67, 6778-6787.
19. Medstrand, P., Linderskog, M. & Blomberg, J. (1992). Expression of human endogenous retroviral sequences in peripheral blood mononuclear cells of healthy individuals. Journal of General Virology 73, 2463-2466.
20. Ono, M., Yasunaga, T., Miyata, T. & Ushikubo, H. (1986). Nucleotide sequence of human endogenous retrovirus genome related to the mouse mammary tumor virus genome. Journal of Virology 60, 589-598.
21. Patience, C., Simpson, G. R., Colletta, A. A., Welch, H. M., Weiss, R. A. & Boyd, M. T. (1996). Human endogenous retrovirus expression and reverse transcriptase activity in the T47D mammary carcinoma cell line. Journal of Virology 70, 2654-2657.
22. Robinson, H. L., Astrin, S. M., Senior, A. M. & Salazar, F. H. (1981). Host susceptibility to endogenous viruses: defective, glycoprotein-expressing proviruses interfere with infections. Journal of Virology 40, 745-751.
23. Rubin, H. (1960). A virus in chick embryos which induces resistance in vitro to infection with Rous sarcoma virus. Proceedings of the National Academy of Sciences, USA 46, 1105-1119.
24. Sambrook, J., Fritsch, E. F., & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
25. Sauter, M., Schommer, S., Kremmer, E., Remberger, K., Dolken, G., Lemm, I., Buck, M., Best, B., Neumann-Haefelin, D. & Mueller-Lantzsch, N. (1995). Human endogenous retrovirus K10: expression of Gag protein and detection of antibodies in patients with seminomas. Journal of Virology 69, 414-421.
26. Simpson, G. R., Patience, C., Lower, R., Tonjes, R. R., Moore, H. D. M., Weiss, R. A. & Boyd, M. T. (1996). Endogenous D-type (HERV-K) related sequences are packaged into retroviral particles in the placenta and possess open reading frames for reverse transcriptase. Virology 222, 451-456.
27. Smith, S. D., Shatsky, M., Cohen, P. S., Warnke, R., Link, M. P. & Glader, B. E. (1984). Monoclonal antibody and enzymatic profiles of human malignant T-lymphoid cells and derived cell lines. Cancer Research 44, 5657-5662.
28. Vogetseder, W., Dumfahrt, A., Mayersbach, P., Schonitzer, D. & Dierich, M. P. (1993). Antibodies in human sera recognizing a recombinant outer membrane protein encoded by the envelope gene of the human endogenous retrovirus K. AIDS Research and Human Retroviruses 9, 687-694.
29. Weiss, R. (1985). The search for human RNA tumor viruses. In RNA Tumor Viruses, 2nd edn, pp. 1205-1281. Edited by R. Weiss, N. Teich, H. Varmus & J. Coffin. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
30. Wilkinson, D. A., Mager, D. L. & Leong, J.-A. (1994). Endogenous human retroviruses. In The Retroviridae, pp. 465-535. Edited by J. A. Levy. New York: Plenum Press.
31. Xiong, Y. & Eickbush, T. H. (1990). Origin and evolution of retro elements based upon their reverse transcriptase sequences. EMBO Journal 9, 3353-3362.