DNA pooling in mutation detection with reference to sequence analysis

American Journal of Human Genetics

Volumn 66, Issue 5, 2000, Pages 1689-1692

  Amos, Christopher I ^a,b   Frazier, Marsha L ^a   Wang, Wenfu ^a  

^a UNIVERSITY OF TEXAS MD ANDERSON CANCER CENTER   (United States)

^b Depts of Epidemiol/Biomathematics   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ALLELE; ARTICLE; GENE; GENE MUTATION; HUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

EID: 0033941495     PISSN: 00029297     EISSN: None     Source Type: Journal    
DOI: 10.1086/302894     Document Type: Article

References (15)

1. Barillot E, Lacroix B, Cohen D (1991) Theoretical analysis of library screening using a N-dimensional pooling strategy. Nucleic Acids Res 19:6241-6247
2. Bruno WJ, Knill E, Balding DJ, Bruce DC, Doggett NA, Sawhill WW, Stallings RL, et al (1995) Efficient pooling designs for library screening. Genomics 26:21-30
3. Chen Z-Y, Zarbl H (1997) A non-radioactive, allele specific polymerase chain reaction for reproducible detection of rare mutations in large amounts of genomic DNA: application to human K-ras. Anal Biochem 244: 191-194
4. Churchill GA, Giovanni JJ, Tanksley SD (1993) Pooled-sampling makes high resolution mapping practical with DNA markers. Proc Natl Acad Sci USA 90:16-20
5. Claus EB, Risch N, Thompson WD (1991) Genetic analysis of breast cancer in the cancer and steroid hormone study. Am J Hum Genet 48: 232-242
6. Coolbaugh-Murphy M, Maleki A, Strong L, Lynch P, Frazier M, Monckton D, Brown B, et al (1999) Microsatellite instability (MSI) in vitro vs. in vivo? Am J Hum Genet Suppl 65:A123
7. Daniels J, Holmans P, Williams N, Turic D, McGuffin P, Plomin R, Owne JM (1998) A simple method for analyzing microsatellite allele image patterns generated from DNA pools and its application to allelic association studies. Am J Hum Genet 62:1189-1197
8. Ewing B, Green P (1998) Base-calling and automated sequencer traces using PHRED. I. Error Probabilities. Genome Res 8:186-194
9. Ewing B, Hillier LD, Wendl MC, Green P (1998) Base-calling and automated sequencer traces using PHRED. I. Accuracy assessment. Genome Res 8:175-185
10. Hartge P, Struewing JP, Wacholder S, Brody LC, Tucker MA (1999) The prevalence of common BRCA1 and BRCA2 mutations among Ashkenazi Jews. Am J Hum Genet 64: 963-970
11. Krook A, Stratton IM, O'Rahilly S (1992) Rapid and simultaneous detection of multiple mutations by pooled and multiplex single nucleotide primer extension: application to the study of insulin-responsive glucose transporter and insulin receptor mutations in non-insulin-dependent diabetes. Hum Mol Genet 1:391-395
12. Mohrenweiser HW, Jones IM (1998) Variation in DNA repair is a factor in cancer susceptibility: a paradigm for the promises and perils of individual and population risk estimation? Mutat Res 400:15-24
13. Shaw SH, Carrasquillo MM, Kashuk C, Puffenberger EG, Chakravarti A (1998) Allele frequency distributions in pooled DNA samples: applications to mapping complex disease genes. Genome Res 8:111-123
14. Sheffield VC, Nishimura DA, Stone EM (1995) Novel approaches to linkage mapping. Curr Opin Genet Dev 5: 335-341
15. Taillon-Miller P, Piernot EE, Kwok P-Y (1999) Efficient approach to unique single-nucleotide polymorphism discovery. Genome Res 9:499-505