Molecular diagnosis of communal respiratory viral infections;Diagnostic moleculaire des infections virales respiratoires communautaires

Virologie

Volumn 4, Issue 4, 2000, Pages 319-328

  Freymuth, F ^a   Vabret, A ^a   Petitjean, J ^a   Gouarin, S ^a   Gueudin, M ^a   Campet, M ^a  

^a CAEN UNIVERSITY HOSPITAL   (France)

Author keywords

Adenovirus; Influenza; Parainfluenza; PCR; Respiratory syncytial virus; Rhinovirus

Indexed keywords

ADENOVIRUS; ANTIGEN DETECTION; CORONAVIRUS; ENZYME IMMUNOASSAY; IMMUNOFLUORESCENCE TEST; INFLUENZA VIRUS; NONHUMAN; PARAINFLUENZA VIRUS; POLYMERASE CHAIN REACTION; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; RESPIRATORY SYSTEM; REVIEW; RHINOVIRUS; VIRUS DIAGNOSIS; VIRUS INFECTION; VIRUS ISOLATION;

ADENOVIRIDAE; CORONAVIRUS; INFLUENZA A VIRUS; INFLUENZA VIRUS; RESPIRATORY SYNCYTIAL VIRUS; RHINOVIRUS; RICE STRIPE VIRUS; SYNCYTIAL VIRUS;

EID: 0033862719     PISSN: 12678694     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (54)

1. Freymuth F, Vabret A, Brouard J, et al. Detection of viral, Chlamydia pneumoniae, Mycoplasma pneumoniae infections in exacerbations of asthma in children. J Clin Virol 1999 ; 13 : 131-9.
2. Gardner PS, McQuillin J. Application of immunofluorescent antibody technique in the rapid diagnosis of respiratory syncytial virus infection. Br Med J 1968 ; 2 : 340-1.
3. Yamada A, Imanishi J, Nakajima E, Nakajima K, Nakajima S. Detection of influenza viruses in throat swab by using polymerase chain reaction. Microbiol Immunol 1991 ; 35 : 259-65.
4. Zhang W, Evans DH. Detection and identification of human influenza by the polymerase chain reaction. J Virol Methods 1991 ; 33 : 165-89.
5. Paton AW, Paton JC, Lawrence AJ, Goldwater PN, Harris RJ. Rapid detection of respiratory syncytial virus in nasopharyngeal aspirates by reverse transcription and polymerase chain amplification. J Clin Microbiol 1992 ; 30 : 901-4.
6. Cubie HA, Ingis JM, Leslie BE, Edmunds AT, Totapally B. Detection of respiratory syncytial virus in acute bronchiolitis in infants. J Med Virol 1992 ; 38 : 283-7.
7. Bressoud A, Whitcmob J, Pourzand C, Haller O, Cerutti P. Rapid detection of influenza virus H1 by the polymerase chain reaction. Biochem Biophys Res Commun 1990 ; 167 : 425-30.
8. Claas ECJ, Sprenger MJW, Kleter GEM, van Beck R, Quint WGV, Masurel N. Type-specific identification of influenza viruses A, B and C by the polymerase chain reaction. J Virol Methods 1992 ; 39 : 1-13.
9. Donofrio JC, Coonrod JD, Davidson JN, Betts RF. Detection of influenza A and B in respiratory secretions with the polymerase chain reaction. PCR Methods Appl 1992 ; 1 : 263-8.
10. Pisavera M, Bechtereva T, Plyusnin A, Dobretsova A, Kisselev O. PCR amplification of influenza A virus specific sequences. Arch Virol 1992 ; 125 : 313-8.
11. Ellis JS, Fleming DM, Zambon MC. Multiplex reverse transcription-PCR for surveillance of influenza A and B viruses in England and Wales in 1995 and 1996. J Clin Microbiol 1997 ; 35 : 2076-82.
12. Pregliasco F, Mensi C, Camorali L, Anselmi G. Comparison of RT-PCR with other diagnostic assays for rapid detection of influenza viruses. J Med Virol 1998 ; 56 : 168-73.
13. Claas ECJ, van Milaan AJ, Sprenger MJW, et al. Prospective application of reverse transcription polymerase chain reaction for diagnosing influenza infections in respiratory samples from a children's hospital. J Clin Microbiol 1993 ; 31 : 2218-21.
14. Atmar RL, Baxter BD, Dominguez EA, Taber LH. Comparison of reverse transcription-PCR with tissu culture and other rapid diagnosis assays for detection of type A influenza virus. J Clin Microbiol 1996 ; 34 : 2604-6.
15. Cherian T, Bobo L, Steinhoff MC, Karron RA, Yolken RH. Use of PCR-enzyme immunoassay for identification of influenza A virus matrix RNA in clinical samples negative for cultivable virus. J Clin Microbiol 1994 ; 32 : 623-8.
16. Wright KE, Wilson GAR, Novosad D, Dimock C, Tan D, Weber JM. Typing and subtyping of influenza viruses in clinical samples by PCR. J Clin Microbiol 1995 ; 33 : 1180-4.
17. Magnard C, Valette M, Aymard M, Lina B. Comparison of two nested PCR, cell culture, and antigen detection for the diagnosis of upper respiratory tract infections due to influenza viruses. J Med Virol 1999 ; 59 : 215-20.
18. Henkel JH, Aberle SW, Kundi M, Popow-Kraupp T. Improved detection of respiratory syncytial virus in nasal aspirates by semi-nested RT-PCR. J Med Virol 1997 ; 53 : 366-71.
19. Van Milaan AJ, Sprenger MJW, Rothbarth PH, Brandenburg AH, Masurel N, Claas ECJ. Detection of respiratory syncytial virus by RNA-polymerase chain reaction and differentiation of subgroups with oligonucleotide probes. J Med Virol 1994 ; 44 : 80-7.
20. Cane PR, Pringle CR. Respiratory syncytial virus heterogeneity during an epidemic : analysis by limited nucleotide sequencing (SH gene) and restriction mapping (N gene). J Gen Virol 1991 ; 72 : 349-57.
21. Freymuth F, Eugene G, Vabret A, et al. Detection of respiratory syncytial virus by reverse transcription-PCR and hybridization with a DNA enzyme immunoassay. J Clin Microbiol 1995 ; 33 : 3352-5. Erratum. J Clin Microbiol 1996 ; 34 : 1601.
22. Freymuth F, Vabret A, Galateau-Salle F, et al. Detection of respiratory syncytial virus, parainfluenzavirus 3, adenovirus and rhinovirus sequences in respiratory tract of infants by polymerase chain reaction and hybridization. Clin Diagn Virol 1997 ; 8 : 31-40.
23. Eugene-Ruellan G, Freymuth F, Bahloul C, Badrane H, Vabret A, Tordo N. Detection of respiratory syncytial virus A and B, and parainfluenzavirus 3 sequences in respiratory tract of infants by a single PCR with primers targeted to the L-polymerase gene. J Clin Microbiol 1998 ; 36 : 796-801.
24. Sullender WM, Wertz GW. Synthetic oligonucleotide probes differentiate respiratory syncytial virus subgroups in a nucleic acid hybridization assay. J Clin Microbiol 1991 ; 29 : 1255-7.
25. Freymuth F, Petitjean J, Pothier P, Norrby E, Brouard J. Prevalence of respiratory syncytial virus subgroups A and B in France, 1982 to 1990. J Clin Microbiol 1991 ; 29 : 653-5.
26. Echevarria JE, Erdmann DD, Swierkosz EM, Holloway BP, Anderson LJ. Simultaneous detection and identification of human parainfluenza viruses 1, 2, and 3 from clinical samples by multiplex PCR. J Clin Microbiol 1998 ; 36 : 1388-91.
27. Fan J, Henrikson KJ. Rapid diagnosis of human parainfluenzavirus type 1 infection by quantitative reverse transcription-PCR-enzyme hybridization assay. J Clin Microbiol 1996 ; 34 : 1914-7.
28. Karron RA, Froehlich JL, Belshe RB, Yolken RH. Rapid detection of parainfluenza virus type 3 in respiratory specimens : use of reverse transcription-PCR-enzyme immunoassay. J Clin Microbiol 1994 ; 32 : 484-8.
29. Gwalney JM. Rhinoviruses P 593. In : Evans AS, ed. Viral Infection of humans : epidemiology and control. 3rd Ed. Plenum Press, New York, 1989.
30. Freymuth F, Quibriac M, Petitjean J, et al. Rhinovirus et infections respiratoires aiguës du nourrisson. Arch Fr Pediatr 1986 ; 43 : 677-9.
31. Johnston SL, Pattemore PK, Sanderson G, et al. Community study of role of viral infection in exacerbations of asthma in 9-11 year old children. Br Med J 1993 ; 310 : 1225-9.
32. Gama RE, Horsnell PR, Hughes PJ, et al. Amplification of rhinovirus specific nucleic acids from clinical samples using the polymerase chain reaction. J Med Virol 1989 ; 28 : 73-7.
33. Olive DM, Al-Mufti S, Al-Mulla W, et al. Detection and differentiation of picornaviruses in clinical samples following genomic amplification. J Gen Virol 1990 ; 71 : 2141-7.
34. Arruda E, Hayden FG. Detection of human rhinovirus RNA in nasal washings. Mol Cell Probes 1993 ; 7 : 373-9.
35. Atmar L, Georghiou PL. Classification of respiratory tract picornavirus isolates as enteroviruses or rhinoviruses by using reverse transcription-polymerase chain reaction. J Clin Microbiol 1993 ; 31 : 2544-6.
36. Johnston SL, Sanderson G, Pattemore PK, et al. Use of polymerase chain reaction for diagnosis of picornavirus infection in subjects with and without respiratory symptoms. J Clin Microbiol 1993 ; 31 : 111-7.
37. e colloque de Pont-à-Mousson. Galteau MM, Delwaide P, Siest G, Henny S, eds. John Libbey Eurotext, Paris 1997 : 103-8.
38. Mammes O. Intérêts et limites de la PCR dans le diagnostic des bronchiolites à rhinovirus chez le nourrisson. Thèse Pharm, Paris, 1994, 5199494PA05P182.
39. Ireland DC, Kent J, Nicholson KG. Improved detection of rhinoviruses in nasal and throat swabs by seminested PCR. J Med Virol 1993 ; 40 : 96-101.
40. Wadell G, Hammarskjold ML, Winberg G, Varsanyi TM, Sundell G. Genetic variability of adenovirus. Ann NY Acad Sci 1980 ; 354 : 16-42.
41. Allard A, Girones R, Juto P, Wadell G. Polymerase chain reaction for detection of adenoviruses in stool specimens. J Clin Microbiol 1990 ; 28 : 2659-67.
42. Hierholzer JC, Halonen PE, Dahlen PO, Bingham PG, McDonough MM. Detection of adenovirus in clinical specimens by polymerase chain reaction and liquid-phase hybridization quantified by time-resolved fluorometry. J Clin Microbiol 1993 ; 31 : 1886-91.
43. Wu TC, Kanayama MD, Hruban RH, Au WC, Askin FB, Hutchins GM. Virus associated RNAs (VA-I and VA-II) : an efficient target for the detection of adenovirus infections by in situ hybridization. Am J Pathol 1992 ; 140 : 991-8.
44. Morris DJ, Cooper RJ, Barr T, Bailey AS. Polymerase chain reaction for rapid diagnosis of respiratory adenovirus infection. J Infect 1996 ; 32 : 113-7.
45. Matsuse T, Matsui H, Shu CY, et al. Adenovirus pulmonary infections identified by PCR and in situ hybridization in bone marrow transplant recipients. J Clin Pathol 1994 ; 47 : 973-7.
46. Kidd AH, Jonsson M, Garwicz D, et al. Rapid subgenus identification of human adenovirus isolates by a general PCR. J Clin Microbiol 1996 ; 34 : 622-7.
47. Pring-Akerblom P, Trijssenaar FEJ, Adrian T, Hoyer H. Multiplex polymerase chain reaction for subgenus-specific detection of human adenoviruses in clinical samples. J Med Virol 1999 ; 58 : 87-92.
48. Vabret A, Brouard J, Petitjean J, Eugene-Ruellan G, Freymuth F. Infections à coronavirus humains : importance et diagnostic. Presse Med 1998 ; 27 : 1813-7.
49. Myint S, Johnston S, Sanderson G, Simpson H. Evaluation of nested polymerase chain methods for the detection of coronaviruses 229E and OC43. Mol Cell Probes 1994 ; 8 : 357-64.
50. Stewart JN, Mounir S, Talbot JP. Detection of coronaviruses by the polymerase chain reaction. In : Diagnosis of human viruses by polymerase chain reaction technology. Becker Y, Darai G eds. Springer-Verlag, New-York, 1995 : 317-27.
51. Gilbert LL, Dakhama A, Bone BM, Thomas EE, Hegele RG. Diagnosis of viral respiratory tract infections in children by using a reverse transcription-PCR panel. J Clin Microbiol 1996 ; 34 : 140-3.
52. Fan J, Henrickson KJ, Savatski LS. Rapid simultaneous diagnosis of infections with respiratory syncytial viruses A and B, influenza viruses A and B, and human parainfluenza virus type 1, 2, and 3 by multiplex quantitative reverse transcription-polymerase chain reaction-enzyme hybridization assay (Hexaplex). Clin Infect Dis 1998 ; 26 : 1397-402.
53. Osiowy C. Direct detection of respiratory syncytial virus, parainfluenza virus, and adenovirus in clinical respiratory specimens by a multiplex reverse transcription-PCR. J Clin Microbiol 1998 ; 36 : 3149-54.
54. Grondahl B, Puppe W, Hoppe A, Kuhne I, Weigl JA, Schmitt HJ. Rapid identification of nine microorganisms causing acute respiratory tract infections by single-tube multiplex reverse transcription PCR : feasibility study. J Clin Microbiol 1999 ; 37 : 1-7.