[18] RNA-protein interactions in ribosomes: In vitro selection from randomly fragmented rRNA

Methods in Enzymology

Volumn 318, Issue , 2000, Pages 251-268

  Stelzl, Ulrich ^a   Spahn, Christian M T ^a   Nierhaus, Knud H ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA; PROTEIN; PYROXYLIN; RIBOSOMAL PROTEIN L11; RIBOSOME PROTEIN; RNA; RNA 16S; RNA 23S;

COMPLEX FORMATION; HUMAN; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; REVIEW; RIBOSOME; RNA ANALYSIS; RNA BINDING; RNA STRUCTURE; STRUCTURE ANALYSIS; AGAR GEL ELECTROPHORESIS; ARTICLE; BINDING SITE; CHEMISTRY; CONFORMATION; ESCHERICHIA COLI; GENETIC PROCEDURES; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; STATISTICAL MODEL;

BASE SEQUENCE; BINDING SITES; COLLODION; ELECTROPHORESIS, AGAR GEL; ESCHERICHIA COLI; GENETIC TECHNIQUES; MODELS, STATISTICAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PROTEINS; RIBOSOMAL PROTEINS; RIBOSOMES; RNA; RNA, RIBOSOMAL; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 23S;

EID: 0033643162     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/s0076-6879(00)18057-7     Document Type: Review

References (50)

1. J. Frank, J. Zhu, P. Penczek, Y. H. Li, S. Srivastava, A. Verschoor, M. Radermacher, R. Grassucci, R. K. Lata, and R. K. Agrawal, Nature 376, 441 (1995).
2. H. Stark, F. Mueller, E. V. Orlova, M. Schatz, P. Dube, T. Erdemir, F. Zemlin, R. Brimacombe, and M. van Heel, Structure 3, 815 (1995).
3. A. Malhotra, P. Penczek, R. K. Agrawal, I. S. Gabashvili, R. A. Grassucci, R. Jünemann, N. Burkhardt, K. H. Nierhaus, and J. Frank, J. Mol. Biol. 280, 103 (1998).
4. N. Ban, B. Freeborn, P. Nissen, P. Penczek, R. Grassucci, R. Sweet, J. Frank, P. B. Moore, and T. A. Steitz, Cell 93, 1105 (1998).
5. F. Mueller and R. Brimacombe, J. Mol. Biol. 271, 524 (1997).
6. F. Mueller and R. Brimacombe, J. Mol. Biol. 271, 545 (1997).
7. F. Mueller, H. Stark, M. van Heel, J. Rinke-Appel, and R. Brimacombe, J. Mol. Biol. 271, 566 (1997).
8. S. V. Nikonov, N. A. Nevskaya, R. V. Fedorov, A. R. Khairullina, S. V. Tishchenko, A. D. Nikulin, and M. B. Garber, Biol. Chem. 379, 795 (1998).
9. V. Ramakrishnan and S. W. White, Trends Biochem. Sci. 23, 208 (1998).
10. K. H. Nierhaus, Biochimie 73, 739 (1991).
11. T. Powers and H. F. Noller, RNA 1, 194 (1995).
12. D. E. Draper, in "Ribosomal RNA: Structure, Evolution, Processing and Function in Protein Biosynthesis" (R. A. Zimmermann and A. E. Dahlberg, eds.), p. 171. CRC Press, Boca Raton, FL, 1996.
13. R. Schroeder, Nature 370, 597 (1994).
14. P. Purohit and S. Stern, Nature 370, 659 (1994).
15. D. Fourmy, M. I. Recht, S. C. Blanchard, and J. D. Puglisi, Science 274, 1367 (1996).
16. J. M. Zengel and L. Lindahl, Prog. Nucleic Acid Res. Mol. Biol. 47, 331 (1994).
17. H. Moine, C. Cachia, E. Westhof, B. Ehresmann, and C. Ehresmmann, RNA 3, 255 (1997).
18. K. Kalurachchi, K. Uma, R. A. Zimmermann, and E. P. Nikonowicz, Proc. Natl. Acad. Sci. U.S.A. 94, 2139 (1997).
19. R. T. Batey and J. R. Williamson, J. Mol. Biol. 261, 536 (1996).
20. A. A. Serganov, B. Masquida, E. Westhof, C. Cachia, C. Portier, M. Garber, B. Ehresmann, and C. Ehresmann, RNA 2, 1124 (1996).
21. C. Turek and L. Gold, Science 249, 505 1990.
22. A. D. Ellington and J. W. Szostak, Nature 346, 818 (1990).
23. B.-A. Howard, G. Thom, I. Jeffery, D. Colthurst, D. Knowels, and C. D. Prescott, Biochem. Cell Biol. 73, 1161 (1995).
24. G. Thom and C. D. Prescott, Bioorgan. Med. Chem. 5, 1081 (1997).
25. T. Tenson and A. Mankin, Biochem. Cell Biol. 73, 1061 (1995).
26. T. Tenson, A. DeBlasio, and A. S. Mankin, Proc. Natl. Acad. Sci. U.S.A 93, 5641 (1996).
27. J. Thompson and E. Cundliffe, Biochimie 73, 1131 (1991).
28. D. E. Draper, in "The Many Faces of RNA" (D. S. Eggleston, C. D. Prescott, and N. D. Pearson, eds.), p. 113. Academic Press, London, 1998.
29. F. J. Schmidt, J. Thompson, K. Lee, J. Dijk, and E. Cundliffe, J. Biol. Chem. 256, 12301 (1981).
30. A. A. D. Beauclerk, E. Cundliffe, and J. Dijk, J. Biol. Chem. 259, 6559 (1984).
31. D. Moazed, J. M. Robertson, and H. F. Noller, Nature 334, 362 (1988).
32. U. Saarma, J. Remme, M. Ehrenberg, and N. Bilgin, J. Mol. Biol. 272, 327 (1997).
33. A. Munishkin and I. G. Wool, Proc. Natl. Acad. Sci. U.S.A. 94, 12280 (1997).
34. J. Egebjerg, S. Douthwaite, and R. A. Garrett, EMBO J. 8, 607 (1989).
35. P. C. Ryan and D. E. Draper, Biochemistry 28, 9949 (1989).
36. Y. Xing and D. E. Draper, Biochemistry 35, 1581 (1996).
37. A. A. D. Beauclerk, H. Hummel, D. J. Holmes, A. Böck, and E. Cundliffe, Eur. J. Biochem. 151, 245 (1985).
38. T. T. A. L. El-Baradi, V. H. C. F. D. Regt, S. W. C. Einerhand, J. Teixido, R. J. Planta, J. P. G. Ballesta, and H. A. Raue, J. Mol. Biol. 195, 909 (1987).
39. W. Musters, P. M. Goncalves, K. Boon, H. A. Raue, H. Vanheerikhuizen, and R. J. Planta, Proc. Natl. Acad. Sci. U.S.A. 88, 1469 (1991).
40. J. Thompson, W. Musters, E. Cundliffe, and A. E. Dahlberg, EMBO J. 12, 1499 (1993).
41. D. E. Draper, I. C. Deckman, and J. V. Vartikar, Methods Enzymol. 164, 203 (1988).
42. G. Diedrich, N. Burkhardt, and K. H. Nierhaus, Prot. Express. Purif. 10, 42 (1997).
43. B. T. U. Lewicki, T. Margus, J. Remme, and K. H. Nierhaus, J. Mol. Biol. 231, 581 (1993).
44. E. Melgar and D. A. Goldthwait, J. Biol. Chem. 243, 4409 (1968).
45. D. Irvine, C. Tuerk, and L. Gold, J. Mol. Biol. 222, 739 (1991).
46. L. Gold, B. Polisky, O. Uhlenbeck, and M. Yarus, Annu. Rev. Biochem. 64, 763 (1995).
47. Methods Enzymol. 267 (1996).
48. F. J. Triana-Alonso, M. Dabrowski, J. Wadzack, and K. H. Nierhaus, J. Biol. Chem. 270, 6298 (1995).
49. J. Carey, V. Cameron, P. L. deHaseth, and O. C. Uhlenbeck, Biochemistry 22, 2601 (1983).
50. K. H. Nierhaus, in "Ribosomes and Protein Synthesis: A Practical Approach" (G. Spedding, ed.), p. 161. IRL Press, Oxford, 1990.