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Proceedings of the National Academy of Sciences of the United States of America

Volumn 93, Issue 21, 1996, Pages 11609-11614

Intrinsic compressibility and volume compression in solvated proteins by molecular dynamics simulation at high pressure

(2) Paci, Emanuele a Marchi, Massimo a

a DIF (France)

Author keywords

static structure factor; volume fluctuations

Indexed keywords

LYSOZYME; SUPEROXIDE DISMUTASE;

ARTICLE; CALCULATION; COMPRESSION; CONTROLLED STUDY; HYPERBARISM; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; SIMULATION; SOLVATION;

EID: 0029859688 PISSN: 00278424 EISSN: None Source Type: Journal
DOI: 10.1073/pnas.93.21.11609 Document Type: Article

Times cited : (73)

References (45)

1
- 0000580978
- Frauenfelder, H., Alberding, N. A., Ansari, A., Braunstein, D., Cowen, B. R., et al. (1990) J. Phys. Chem. 94, 1024-1037.
- (1990) J. Phys. Chem. , vol.94 , pp. 1024-1037
- Frauenfelder, H.¹ Alberding, N.A.² Ansari, A.³ Braunstein, D.⁴ Cowen, B.R.⁵

2
- 0027762355
- Silva, J. L. & Weber, G. (1993) Annu. Rev. Phys. Chem. 44, 89-113.
- (1993) Annu. Rev. Phys. Chem. , vol.44 , pp. 89-113
- Silva, J.L.¹ Weber, G.²

3
- 0028226052
- Jonas, J. & Jonas, A. (1994) Annu. Rev. Biophys. Biomol. Struct. 23, 287-318.
- (1994) Annu. Rev. Biophys. Biomol. Struct. , vol.23 , pp. 287-318
- Jonas, J.¹ Jonas, A.²

4
- 0000109395
- Weber, G. (1993) J. Phys. Chem. 97, 7108-7115.
- (1993) J. Phys. Chem. , vol.97 , pp. 7108-7115
- Weber, G.¹

5
- 0342885250
- Peng, X. D., Jonas, J. & Silva, J. L. (1994) Biochemistry 33, 8223-8329.
- (1994) Biochemistry , vol.33 , pp. 8223-8329
- Peng, X.D.¹ Jonas, J.² Silva, J.L.³

6
- 0021726687
- Cooper, A. (1984) Prog. Biophys. Mol. Biol. 44, 181-214.
- (1984) Prog. Biophys. Mol. Biol. , vol.44 , pp. 181-214
- Cooper, A.¹

7
- 0023644307
- Kundrot, C. E. & Richards, F. M. (1987) J. Mol. Biol. 193, 157-170.
- (1987) J. Mol. Biol. , vol.193 , pp. 157-170
- Kundrot, C.E.¹ Richards, F.M.²

8
- 0022649889
- Marden, M. C., Hui, G. & Stetzkowsky-Marden, F. (1986) Biophys. J. 49, 619-627.
- (1986) Biophys. J. , vol.49 , pp. 619-627
- Marden, M.C.¹ Hui, G.² Stetzkowsky-Marden, F.³

9
- 0026781884
- Samarasinghe, S. D., Campbell, D. M., Jonas, A. & Jonas, J. (1992) Biochemistry 31, 7773-7778.
- (1992) Biochemistry , vol.31 , pp. 7773-7778
- Samarasinghe, S.D.¹ Campbell, D.M.² Jonas, A.³ Jonas, J.⁴

10
- 0001669980
- Zollfrank, J., Friedrich, J., Fidy, J. & Vanderkooi, J. M. (1991) J. Chem. Phys. 94, 8600-8603.
- (1991) J. Chem. Phys. , vol.94 , pp. 8600-8603
- Zollfrank, J.¹ Friedrich, J.² Fidy, J.³ Vanderkooi, J.M.⁴

11
- 0022999267
- Gekko, K. & Hasegawa, Y. (1986) Biochemistry 25, 6563-6571.
- (1986) Biochemistry , vol.25 , pp. 6563-6571
- Gekko, K.¹ Hasegawa, Y.²

12
- 0027535729
- Kharakoz, D. P. & Sarvazyan, A. P. (1993) Biopolymers 33, 11-25.
- (1993) Biopolymers , vol.33 , pp. 11-25
- Kharakoz, D.P.¹ Sarvazyan, A.P.²

13
- 33947091942
- Millero, F. J., Losurdo, A. & Shin, C. (1978) J. Phys. Chem. 82, 784-792.
- (1978) J. Phys. Chem. , vol.82 , pp. 784-792
- Millero, F.J.¹ Losurdo, A.² Shin, C.³

14
- 0026785575
- Kitchen, D. B., Reed, L. H. & Levy, R. M. (1992) Biochemistry 31, 10083-10093.
- (1992) Biochemistry , vol.31 , pp. 10083-10093
- Kitchen, D.B.¹ Reed, L.H.² Levy, R.M.³

15
- 0027285706
- Brunne, R. M. & vanGunsteren, W. F. (1993) FEBS Lett. 323, 215-217.
- (1993) FEBS Lett. , vol.323 , pp. 215-217
- Brunne, R.M.¹ VanGunsteren, W.F.²

16
- 0000411306
- Paci, E. & Marchi, M. (1996) J. Phys. Chem. 100, 4314-4322.
- (1996) J. Phys. Chem. , vol.100 , pp. 4314-4322
- Paci, E.¹ Marchi, M.²

17
- 22944467757
- Verlet, L. (1967) Phys. Rev. 159, 98-103.
- (1967) Phys. Rev. , vol.159 , pp. 98-103
- Verlet, L.¹

18
- 36749119811
- Ryckaert, J.-P. & Ciccotti, G. (1983) J. Chem. Phys. 78, 7368-7374.
- (1983) J. Chem. Phys. , vol.78 , pp. 7368-7374
- Ryckaert, J.-P.¹ Ciccotti, G.²

19
- 0002775934
- ed. Pullman, B. (Reider, Dordrecht, The Netherlands)
- Berendsen, H. J. C., Postma, J. P. M., vanGunsteren, W. F. & Hermans, J. (1981) in Intermolecular Forces, ed. Pullman, B. (Reider, Dordrecht, The Netherlands), pp. 331-334.
- (1981) Intermolecular Forces , pp. 331-334
- Berendsen, H.J.C.¹ Postma, J.P.M.² Vangunsteren, W.F.³ Hermans, J.⁴

20
- 84986512474
- Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, S. & Karplus, M. (1983) J. Comput. Chem. 4, 187-217.
- (1983) J. Comput. Chem. , vol.4 , pp. 187-217
- Brooks, B.R.¹ Bruccoleri, R.E.² Olafson, B.D.³ States, D.J.⁴ Swaminathan, S.⁵ Karplus, M.⁶

21
- 85043073218
- Polygen Corp., Waltham, MA, Version 20
- Polygen Corp. (1989) Parameter and Topology files for CHARMM (Polygen Corp., Waltham, MA), Version 20.
- (1989) Parameter and Topology Files for CHARMM

22
- 33646940952
- Ryckaert, J.-P., Ciccotti, G. & Berendsen, H. J. C. (1977) J. Comput. Phys. 23, 327-341.
- (1977) J. Comput. Phys. , vol.23 , pp. 327-341
- Ryckaert, J.-P.¹ Ciccotti, G.² Berendsen, H.J.C.³

23
- 84986519281
- Shen, J., Wong, C. F., Subramaniam, S., Albright, T. A. & McCammon, J. A. (1990) J. Comput. Chem. 11, 346-350.
- (1990) J. Comput. Chem. , vol.11 , pp. 346-350
- Shen, J.¹ Wong, C.F.² Subramaniam, S.³ Albright, T.A.⁴ McCammon, J.A.⁵

24
- 36749107785
- Andersen, H. C. (1980) J. Chem. Phys. 72, 2384-2393.
- (1980) J. Chem. Phys. , vol.72 , pp. 2384-2393
- Andersen, H.C.¹

25
- 26144434487
- Parrinello, M. & Rahman, A. (1980) Phys. Rev. Lett. 45, 1196-1199.
- (1980) Phys. Rev. Lett. , vol.45 , pp. 1196-1199
- Parrinello, M.¹ Rahman, A.²

26
- 0014952474
- Brandt, J. F., Oliveira, R. J. & Westort, C. (1970) Biochemistry 9, 1038-1047.
- (1970) Biochemistry , vol.9 , pp. 1038-1047
- Brandt, J.F.¹ Oliveira, R.J.² Westort, C.³

27
- 0015977588
- Richards, F. M. (1974) J. Mol. Biol. 82, 1-14.
- (1974) J. Mol. Biol. , vol.82 , pp. 1-14
- Richards, F.M.¹

28
- 84927514013
- Voronoi, G. F. (1908) Z. Reine Angew. Math. 134, 198-287.
- (1908) Z. Reine Angew. Math. , vol.134 , pp. 198-287
- Voronoi, G.F.¹

29
- 33646058673
- Bernal, J. D. & Finney, J. L. (1967) Discuss. Faraday Soc. 43, 62-69.
- (1967) Discuss. Faraday Soc. , vol.43 , pp. 62-69
- Bernal, J.D.¹ Finney, J.L.²

30
- 0014883682
- Finney, J. L. (1970) Proc. R. Soc. Lond. A 319, 479-493.
- (1970) Proc. R. Soc. Lond. A , vol.319 , pp. 479-493
- Finney, J.L.¹

31
- 0028773889
- Harpaz, Y., Gerstein, M. & Chothia, C. (1994) Structure (London) 2, 641-649.
- (1994) Structure (London) , vol.2 , pp. 641-649
- Harpaz, Y.¹ Gerstein, M.² Chothia, C.³

32
- 22544446558
- Dodd, L. R. & Theodorou, D. N. (1991) Mol. Phys. 72, 1313-1345.
- (1991) Mol. Phys. , vol.72 , pp. 1313-1345
- Dodd, L.R.¹ Theodorou, D.N.²

33
- 0000538815
- Connolly, M. L. (1983) J. Appl. Crystallogr. 16, 548-558.
- (1983) J. Appl. Crystallogr. , vol.16 , pp. 548-558
- Connolly, M.L.¹

34
- 0018796418
- McCammon, J. A., Wolynes, P. G. & Karplus, M. (1979) Biochemistry 18, 927-942.
- (1979) Biochemistry , vol.18 , pp. 927-942
- McCammon, J.A.¹ Wolynes, P.G.² Karplus, M.³

35
- 84990662891
- A general algorithm for computing Voronoi volumes: Application to the hydrated crystal of myoglobin
- Procacci, P. & Scateni, R. (1992) Int. J. Quantum Chem. 42, 1515-1528.
- (1992) International Journal of Quantum Chemistry , vol.42 , Issue.5 , pp. 1515-1528
- Procacci, P.¹ Scateni, R.²

36
- 0020710950
- Gavish, B., Gratton, E. & Hardy, C. J. (1983) Proc. Natl. Acad. Sci. USA 80, 750-754.
- (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 750-754
- Gavish, B.¹ Gratton, E.² Hardy, C.J.³

37
- 0018501880
- Squire, P. G. & Himmel, M. E. (1979) Arch. Biochem. Biophys. 196, 165-177.
- (1979) Arch. Biochem. Biophys. , vol.196 , pp. 165-177
- Squire, P.G.¹ Himmel, M.E.²

38
- 0010312423
- eds. Allen, M. P. & Tildesley, D. J. (Kluwer Academic, Dordrecht, The Netherlands)
- Ferrario, M. (1993) in Computer Simulation in Chemical Physics, eds. Allen, M. P. & Tildesley, D. J. (Kluwer Academic, Dordrecht, The Netherlands), pp. 153-171.
- (1993) Computer Simulation in Chemical Physics , pp. 153-171
- Ferrario, M.¹

39
- 0000725483
- Cooper, A. (1976) Proc. Natl. Acad. Sci. USA 73, 2740-2741.
- (1976) Proc. Natl. Acad. Sci. USA , vol.73 , pp. 2740-2741
- Cooper, A.¹

40
- 0028220701
- Gross, M. & Jaenicke, R. (1994) Eur. J. Biochem. 221, 617-630.
- (1994) Eur. J. Biochem. , vol.221 , pp. 617-630
- Gross, M.¹ Jaenicke, R.²

41
- 0023652260
- Frauenfelder, H., Hartmann, H., Karplus, M., Kuntz, I. D., Kuriyan, J., Parak, F., Petsko, G. A, Ringe, D., Tilton, R. F., Connolly, M. L. & Max, N. (1987) Biochemistry 26, 254-261.
- (1987) Biochemistry , vol.26 , pp. 254-261
- Frauenfelder, H.¹ Hartmann, H.² Karplus, M.³ Kuntz, I.D.⁴ Kuriyan, J.⁵ Parak, F.⁶ Petsko, G.A.⁷ Ringe, D.⁸ Tilton, R.F.⁹ Connolly, M.L.¹⁰ Max, N.¹¹

42
- 0003702492
- Academic, London
- Glatter, O. & Kratky, O. (1982) Small Angle X-Ray Scattering (Academic, London).
- (1982) Small Angle X-Ray Scattering
- Glatter, O.¹ Kratky, O.²

43
- 0029975888
- Henderson, S. J. (1996) Biophys. J. 70, 1618-1627.
- (1996) Biophys. J. , vol.70 , pp. 1618-1627
- Henderson, S.J.¹

44
- 7244239279
- Bellissent-Funel, M. C. & Bosio, L. (1995) J. Chem. Phys. 102, 3727-3735.
- (1995) J. Chem. Phys. , vol.102 , pp. 3727-3735
- Bellissent-Funel, M.C.¹ Bosio, L.²

45
- 0027173885
- Bellissent-Funel, M. C., Lal, J., Bradley, K. F. & Chen, S. H. (1993) Biophys. J. 64, 1542-1549.
- (1993) Biophys. J. , vol.64 , pp. 1542-1549
- Bellissent-Funel, M.C.¹ Lal, J.² Bradley, K.F.³ Chen, S.H.⁴

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