Pressure versus heat-induced unfolding of ribonuclease A: The case of hydrophobic interactions within a chain-folding initiation site

Biochemistry

Volumn 38, Issue 48, 1999, Pages 15952-15961

  Torrent, Joan ^a   Connelly, James Patrick ^b   Coll, Maria Gràcia ^a   Ribó, Marc ^a   Lange, Reinhard ^b   Vilanova, Maria ^a  

^a UNIVERSITY OF GIRONA   (Spain)

^b INSERM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

RIBONUCLEASE A;

AMINO ACID SUBSTITUTION; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONFORMATIONAL TRANSITION; ENZYME ACTIVE SITE; ENZYME CONFORMATION; HYDROPHOBICITY; PRESSURE; PRIORITY JOURNAL; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN PROTEIN INTERACTION; PROTEIN STABILITY; PROTEIN TERTIARY STRUCTURE; TEMPERATURE SENSITIVITY;

ANIMALS; BINDING SITES; CATTLE; CIRCULAR DICHROISM; ENZYME STABILITY; HEAT; MUTAGENESIS, SITE-DIRECTED; MUTATION; PRESSURE; PROTEIN DENATURATION; PROTEIN FOLDING; RIBONUCLEASE, PANCREATIC; SPECTROMETRY, FLUORESCENCE; THERMODYNAMICS;

EID: 0033619681     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991460b     Document Type: Article

References (60)

1. Ptitsyn, O. B. (1994) Protein Eng. 7, 593.
2. Walkenhorst, W. F., Green, S. M., and Roder, H. (1997) Biochemistry 36, 5795.
3. Chan, H. S., and Dill, K. A. (1998) Proteins 30, 2.
4. Royer, C. A., Hinck, A. P., Loh, S. N., Prehoda, K. E., Peng, X., Jonas, J., and Markley, J. L. (1993) Biochemistry 32, 5222.
5. Vidugiris, G. J. A., Truckses, D. M., Markley, J. L., and Royer, C. A. (1996) Biochemistry 35, 3857.
6. Frye, K. J., Perman, C. S., and Royer, C. A. (1996) Biochemistry 35, 10234.
7. Frye, K. J., and Royer, C. A. (1998) Protein Sci. 7, 2217.
8. Panick, G., Vidugiris, G. J. A., Malessa, R., Rapp, G., Winter, R., and Royer, C. A. (1999) Biochemistry 38, 4157.
9. Serrano, L., Matouschek, A., and Fersht, A. R. (1992) J. Mol. Biol. 224, 847.
10. D'Alessio, G., and Riordan, J. F., Eds. (1997) Ribonucleases; Structures and Functions, Academic Press, New York.
11. Raines, R. T. (1998) Chem. Rev. 98, 1045.
12. Pace, C. N., Laurents, D. V., and Thomson, J. A. (1990) Biochemistry 29, 2564.
13. Neira, J. L., and Rico, M. (1997) Folding Des. 2, R1.
14. Brandts, J. F., Oliveira, R. J., and Westort, C. (1970) Biochemistry 9, 1038.
15. Zipp, A., and Kauzmann. W. (1973) Biochemistry 12, 4217.
16. Zhang, J., Peng, X., Jonas, A., and Jonas, J. (1995) Biochemistry 34, 8631.
17. Matheson, R. R., and Scheraga, H. A. (1978) Macromolecules 11, 819.
18. Nemethy, G., and Scheraga, H. A. (1979) Proc. Natl. Acad. Sci. U.S.A. 76, 6050.
19. Beals, J. M., Haas, E., Krausz, S., and Scheraga, H. A. (1991) Biochemistry 30, 7680.
20. Dodge, R. W., and Scheraga, H. A. (1996) Biochemistry 35, 1548.
21. Koradi, R., Billeter, M., and Wüthrich, K. (1996) J. Mol. Graphics 14, 51.
22. Beintema, J. J., Breukelman, H. J., Carsana, A., and Furia, A. (1997) in Ribonucleases; Structures and Functions (D'Alessio, G., and Riordan, J. F., Eds.) pp 245-269, Academic Press, New York.
23. Talluri, S., and Scheraga, H. A. (1990) Biochem. Biophys. Res. Commun. 172, 800.
24. Robertson, A. D., and Baldwin, R. L. (1991) Biochemistry 30, 9907.
25. Nash, D., Lee, B. S., and Jonas, J. (1996) Biochim. Biophys. Acta 1297, 40.
26. Neira, J. L., Sevilla, P., Menéndez, M., Bruix, M., and Rico, M. (1999) J. Mol. Biol. 285, 627.
27. Udgaonkar, J. B., and Baldwin, R. L. (1995) Biochemistry 34, 4088.
28. Houry, W. A., and Scheraga, H. A. (1996) Biochemistry 35, 11734.
29. Alonso, J., Nogués, M. V., and Cuchillo, C. M. (1986) Arch. Biochem. Biophys. 246, 681.
30. delCardayré, S. B., Ribó, M., Yokel, E. M., Quirk, D. J., Rutter, W. J., and Raines, R. T. (1995) Protein Eng. 8, 261.
31. Juncosa-Ginestà, M., Pons, J., Planas, A., and Querol, E. (1994) Biotechniques 16, 820.
32. Kim, J. S., Soucek, J., Matousek, J., and Raines, R. T. (1995) J. Biol. Chem. 270, 10525.
33. Sela, M., and Anfinsen, C. B. (1957) Biochim. Biophys. Acta 24, 229.
34. Gill, S. C., and von Hippel, P. H. (1989) Anal. Biochem. 182, 319.
35. Lange, R., Frank, J., Saldana, J. L., and Balny, C. (1996) Eur. Biophys. J. 24, 277.
36. Silva, J. L., Miles, E. W., and Weber, G. (1986) Biochemistry 25, 5780.
37. Deléage, G., and Geourjon, C. (1993) Comput. Appl. Biosci. 9, 197.
38. Boix, E., Nogués, M. V., Schein, C. H., Benner, S. A., and Cuchillo, C. M. (1994) Biol. Chem. 269, 2529.
39. Leatherbarrow, R. J. (Ed.) (1987) ENZFITTER: A Non-Linear Regression Data Analysis Program for the IBM-PC, Elsevier Biosoft, Cambridge.
40. Roussel, A., and Cambilleau, C. (1989) TURBO - FRODO, pp 77-79, Silicon Graphics, Mountain View, CA.
41. Wlodawer, A., Svensson, L. A., Sjolin, L., and Gilliland, G. L. (1988) Biochemistry 27, 2705.
42. van Gunsteren, W. F., and Berendsen, H. J. C. (1991) Groningen Molecular Simulations (GROMOS), Biomos, Groningen The Netherlands.
43. Xia, T. H. (1992) Ph.D. Dissertation, ETH, Zurich.
44. Kabsch, W., and Sander, C. (1983) Biopolymers 22, 2577.
45. Lange, R., Bec, N., Mozhaev, V. V., and Frank, J. (1996) Eur. Biophys. J. 24, 284.
46. Elwell, M. L., and Schellman, J. A. (1977) Biochim. Biophys. Acta 494, 267.
47. Makhatadze, G. I., and Privalov, P. L. (1995) Adv. Protein Chem. 47, 307.
48. Allen, D. L., and Pielak, G. J. (1998) Protein Sci. 7, 1262.
49. Serrano, L., Kellis, J. T., Jr., Cann, P., Matouschek, A., and Fersht, A. R. (1992) J. Mol. Biol. 224, 783.
50. Shortle, D., Meeker, A. K., and Freire, E. (1988) Biochemistry 27, 4761.
51. Juminaga, D., Wedemeyer, W. J., Garduno-Juarez, R., McDonald, M. A., and Scheraga, H. A. (1997) Biochemistry 36, 10131.
52. Yamaguchi, T., Yamada, H., and Akasaka, K. (1995) J. Mol. Biol. 250, 689.
53. Prehoda, K. E., Mooberry, E. S., and Markley, J. L. (1998) Biochemistry 37, 5785.
54. Harpaz, Y., Gerstein, M., and Chothia, C. (1994) Structure 2, 641.
55. Pace, C. N., Shirley, B. A., McNutt, M., and Gajiwala, K. (1996) J. Mol. Biol. 220, 29.
56. Fauchère, J. L., and Pliska, V. (1983) Eur. J. Med. Chem. 18, 369.
57. Sharp, K. A., Nicholls, A., Friedman, R., and Honig, B. (1991) Biochemistry 30, 9686.
58. Jackson, S. E., Moracci, M., elMasry, N., Johnson, C. M., and Fersht, A. R. (1993) Biochemistry 32, 11259.
59. Nemethy, G., Leach, S. J., and Scheraga, H. A. (1966) J. Phys. Chem. 70, 998.
60. Tanford, C. (1980) The Hydrophobic effect, Wiley & Sons, New York.