Characterization of randomly-obtained matrix attachment regions (MARs) from higher plants

Biochemistry

Volumn 38, Issue 39, 1999, Pages 12795-12804

  Michalowski, Susan M ^a,b   Allen, George C ^a   Hall Jr , Gerald E ^a,c   Thompson, William F ^a   Spiker, Steven ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF NORTH CAROLINA   (United States)

^c PFIZER INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT;

ARTICLE; BINDING AFFINITY; BINDING SITE; DNA BINDING; DNA DETERMINATION; HIGHER PLANT; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL;

BASE SEQUENCE; CLONING, MOLECULAR; DNA, PLANT; MOLECULAR SEQUENCE DATA; NUCLEAR MATRIX; PLANTS;

EID: 0033613104     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991142c     Document Type: Article

References (79)

1. Flemming, W. (1882) Zellsubstanz, Kern und Zelltheilung, F. C. W. Vogel, Leipzig, Germany.
2. Macgregor, H. C. (1986) in Chromosome Structure and Function (Risley, M. S., Ed.) pp 152-186, Van Nostrand & Reinhold, New York.
3. Paulson, J. R., and Laemmli, U. K. (1977) Cell 12, 817-828.
4. Bode, J., Schlake, T., Ríos-Ramírez, M., Mielke, C., Stengert, M., Kay, V., and Klehr-Wirth, D. (1995) Int. Rev. Cytol. 162A, 389-454.
5. Bode, J., Stengert-Iber, M., Kay, V., Schlake, T., and Dietz-Pfeilstetter, A. (1996) Crit. Rev. Eukaryotic Gene Expression 6, 115-138.
6. Cockerill, P. N., and Garrard, W. T. (1986) Cell 44, 273-282.
7. Gasser, S. M., and Laemmli, U. K. (1986) EMBO J. 5, 511-518.
8. Mirkovitch, J., Spierer, P., and Laemmli, U. K. ( 1986) J. Mol. Biol. 190, 255-258.
9. Bode, J., and Maass, K. (1988) Biochemistry 27, 4706-4711.
10. Spiker, S., and Thompson, W. F. (1996) Plant Physiol. 110, 15-21.
11. Gasser, S. M., Amati, B. B., Cardenas, M. E., and Hofman, J. F.-X. (1989) Int. Rev. Cytol. 119, 57-96.
12. Allen, G. C., Hall, G. E., Jr., Childs, L. C., Weissinger, A. K., Spiker, S., and Thompson, W. F. (1993) Plant Cell 5, 603-613.
13. Allen, G. C., Hall, G., Jr., Michalowski, S., Newman, W., Weissinger, A. K., Spiker, S., and Thompson, W. F. (1996) Plant Cell 8, 899-913.
14. Phi-Van, L., von Kries, J. P., Ostertag, W., and Strätling, W. H. (1990) Mol. Cell. Biol. 10, 2302-2307.
15. Phi-Van, L., and Strätling, W. H. (1996) Biochemistry 35, 10735-10742.
16. Poljak, L., Seum, C., Mattioni, T., and Laemmli, U. K. (1994) Nucleic Acids Res. 22, 4386-4394.
17. Schöffl, F., Schröder, G., Kliem, M., and Rieping, M. (1993) Transgenic Res. 2, 93-100.
18. Stief, A., Winder, D. M., Strätling, W. H., and Sippel, A. E. (1989) Nature (London) 341, 343-345.
19. Thompson, E. M., Christians, E., Stinnakre, M.-G., and Renard, J.-P. (1994) Mol. Cell. Biol. 14, 4694-4703.
20. Xu, M., Hammer, R. E., Blasquez, V. C., Jones, S. L., and Garrard, W. T. (1989) J. Biol. Chem. 264, 21190-21195.
21. Kalos, M., and Fournier, R. E. K. (1995) Mol. Cell. Biol. 15, 198-207.
22. Klehr, D., Maass, K., and Bode, J. (1991) Biochemistry 30, 1264-1270.
23. McKnight, R. A., Shamay, A., Sankaran, L., Wall, R. J., and Henninghausen, L. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 6943-6947.
24. Mlynárová, L., Loonen, A., Heldens, J., Jansen, R. C., Kelzer, P., Stiekema, W. J., and Nap, J.-P. (1994) Plant Cell 6, 417-426.
25. Mlynárová, L., Jansen, R. C., Conner, A. J., Stiekema, W. J., and Nap, J.-P. (1995) Plant Cell 7, 599-609.
26. Breyne, P., Van Montagu, M., Depicker, N., and Gheysen, G. (1992) Plant Cell 4, 463-471.
27. Liu, J.-W., and Tabe, L. M. (1998) Plant Cell Physiol. 39, 115-123.
28. Amati, B., Pick, L., Laroche, T., and Gasser, S. M. (1990) EMBO J. 9, 4007-4016.
29. Amati, B., and Gasser, S. M. (1990) Mol. Cell. Biol. 10, 5442-5454.
30. Dijkwel, P. A., and Hamlin, J. L. (1995) Int. Rev. Cytol. 162A, 455-484.
31. Carri, M. T., Micheli, G., Graziano, E., Pace, T., and Buongiorno-Nardelli, M. (1986) Exp. Cell Res. 164, 426-436.
32. Hozak, P., and Cook, P. R. (1994) Trends Cell Biol. 4, 48-52.
33. Brun, C., Dang, Q., and Miassod, R. (1990) Mol. Cell. Biol. 10, 5455-5463.
34. Mah, D. C., Dijkwel, P. A., Todd, A., Klein, V., Price, G. B., and Zannis-Hadjopoulos, M. (1993) J. Cell Sci. 105, 807-818.
35. Hall, G. E., Jr., and Spiker, S. (1994) in Plant Molecular Biology Manual (Gelvin, S., Schilperoort, R., and Verma, D. P., Eds.) pp D2: 1-12, Kluwer Academic Publishers, Dordrecht, The Netherlands.
36. Kay, V., and Bode, J. (1995) in Methods in Molecular and Cellular Biology: Methods for studying DNA-protein inter-actions: an overview (Papavassiliou, A. G., and King, S. L., Eds.) pp 186-194, Wiley-Liss, Inc., New York,.
37. Mirkovitch, J., Mirault, M.-E., and Laemmli, U. K. (1984) Cell 39, 223-232.
38. Käs, E., and Chasin, L. A. (1987) J. Mol. Biol. 198, 677-692.
39. Jarman, A. P., and Higgs, D. R. (1988) EMBO J. 7, 3337-3344.
40. Phi-Van, L., and Strätling, W. H. (1988) EMBO J. 7, 655-664.
41. Hall, G., Jr., Allen, G. C., Loer, D. S., Thompson, W. F., and Spiker, S. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 9320-9324.
42. van der Geest, A. H. M., Hall, G. E., Jr., Spiker, S., and Hall, T. C. (1994) Plant J. 6, 413-423.
43. Chinn, A. M., and Comai, L. (1996) Plant Mol. Biol. 32, 959-968.
44. van Drunen, C. M., Oosterling, R. W., Keultjes, G. M., Weisbeek, P. J., van Driel, R., and Smeekens, S. C. M. (1997) Nucleic Acids Res. 25, 3904-3911.
45. Surdej, P., Got, C., Rosset, R., and Miassod, R. (1990) Nucleic Acids Res. 18, 3713-3722.
46. Iarovaia, O., Hancock, R., Lagarkova, M., Miassod, R., and Razin, S. (1996) Mol. Cell. Biol. 16, 302-308.
47. Fernandez, M. A., Baron, B., Prigent, M., Toledo, F., Buttin, G., and Debatisse, M. (1997) J. Cell. Biochem. 67, 541-551.
48. Avramova, Z., SanMigel, P., Georgieva, E., and Bennetzen, J. L. (1995) Plant Cell 7, 1667-1680.
49. Avramova, Z., and Bennetzen, J. L. (1993) Plant Mol. Biol. 22, 1135-1143.
50. Dijkwel, P. A., and Hamlin, J. L. (1988) Mol. Cell. Biol. 8, 5398-5409.
51. Nikolaev, L. G., Tsevegiyn, T., Akopov, S. B., Ashworth, L. K., and Sverdlov, E. D. (1996) Nucleic Acids Res. 24, 1330-1336.
52. Boulikas, T., and Kong, C. F. (1993) Int. J. Oncol. 2, 325-330.
53. Boulikas, T., and Kong, C. F. (1993) J. Cell. Biochem. 53, 1-12.
54. Gasser, S. M., and Laemmli, U. K. (1986) Cell 46, 521-530.
55. Amati, B., and Gasser, S. M. (1988) Cell 54, 967-978.
56. Boulikas, T. (1993) J. Cell. Biochem. 52, 23-36.
57. Boulikas, T. (1993) J. Cell. Biochem. 52, 14-22.
58. Boulikas, T. (1995) Int. Rev. Cytol. 162A, 279-388.
59. Boulikas, T. (1992) J. Cell. Biochem. 50, 111-123.
60. Mielke, C., Kohwi, Y., Kohwi-Shigematsu, T., and Bode, J. (1990) Biochemistry 29, 7475-7485.
61. Avramova, Z., Tikhonov, A., Chen, M., and Bennetzen, J. L. (1998) Nucleic Acids Res. 26, 761-767
62. Homberger, H. P. (1989) Chromosoma 98, 99-104.
63. Bode, J., Kohwi, Y., Dickinson, L., Joh, R. T., Klehr, D., Mielke, C., and Kohwi-Shigematsu, T. (1992) Science 255, 195-197.
64. Benham, C., Kohwi-Shigematsu, T., and Bode, J. (1997) J. Mol Biol. 274, 181-196.
65. Kramer, J. A., Singh, G. B., and Krawetz, S. A. (1996) Genomics 33, 305-308.
66. Singh, G. B., Kramer, J. A., and Krawetz, S. A. (1997) Nucleic Acids Res. 25, 1419-1425.
67. Strausbaugh, L. D., and Williams, S. M. (1996) J. Theor. Biol. 183, 159-167.
68. Walter, W. R., Singh, G. B., and Krawetz, S. A. (1998) Biochem. Biophys. Res. Commun. 242, 419-422.
69. Michalowski, S. M. (1997) Ph.D. Dissertation, Department of Genetics, North Carolina State University, Raleigh, NC.
70. Strissel, P. L., Dann, H. A., Pomykala, H. M., Diaz, M. O., Rowley, J. D., and Olopade, O. I. (1998) Genetics 47, 217-229.
71. Conkling, M. A., Cheng, C.-L., Yamamoto, Y. T., and Goodman, H. M. (1990) Plant Physiol. 93, 1203-1211.
72. Conners, K. A. (1987) Binding Constants, John Wiley & Sons, New York.
73. Sander, M., and Hsieh, T. S. (1985) Nucleic Acids Res. 13, 1057-1072.
74. Käs, E. (1992) EMBO J. 11, 705-716.
75. Gross, D. S., and Garrard, W. T. (1987) Trends Biochem. Sci. 12, 293-297.
76. Jackson, D. A., Dickinson, P., and Cook, P. R. (1990) EMBO J. 9, 567-571.
77. Vogelstein, B., Pardoll, D. M., and Coffey, D. S. (1980) Cell 22, 79-85.
78. Paul, A. L., and Ferl, R. J. (1998) Plant Cell 10, 1349-1359.
79. Bode, J., Bartsch, J., Boulikas, T., Iber, M., Mielke, C., Schübeler, D., Seibler, J., and Benham, C. (1998) Gene Ther. Mol. Biol. 1, 551-580.